Wall clock time and date at job start Sat Apr 11 2020 06:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47124 * 2 1 4 4 H 1.08995 * 109.99662 * 304.79659 * 3 2 1 5 5 C 1.54326 * 109.99189 * 183.75869 * 3 2 1 6 6 H 1.09004 * 110.51677 * 336.97806 * 5 3 2 7 7 N 1.46494 * 110.85311 * 100.19819 * 5 3 2 8 8 C 1.34776 * 120.00369 * 200.14372 * 7 5 3 9 9 O 1.21645 * 119.99780 * 5.27963 * 8 7 5 10 10 C 1.47035 * 120.00124 * 185.27442 * 8 7 5 11 11 C 1.38534 * 126.90796 * 265.05979 * 10 8 7 12 12 Cl 1.73608 * 127.33567 * 0.02562 * 11 10 8 13 13 C 1.39811 * 105.32710 * 179.91812 * 11 10 8 14 14 N 1.30836 * 107.87276 * 0.35230 * 13 11 10 15 15 N 1.28436 * 110.98562 * 359.77785 * 14 13 11 16 16 C 1.46494 * 125.18803 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.47071 * 275.12659 * 16 15 14 18 18 C 1.55158 * 103.02095 * 218.67045 * 5 3 2 19 19 C 1.54906 * 101.58154 * 35.30421 * 18 5 3 20 20 N 1.47021 * 109.87880 * 65.88892 * 3 2 1 21 21 C 1.36939 * 125.65179 * 298.39534 * 20 3 2 22 22 H 1.07991 * 120.00044 * 336.05262 * 21 20 3 23 23 C 1.38813 * 119.99877 * 156.04735 * 21 20 3 24 24 N 1.31616 * 120.00347 * 332.19873 * 23 21 20 25 25 Si 1.86806 * 119.99728 * 152.19285 * 23 21 20 26 26 H 1.48502 * 109.47049 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47036 * 240.00470 * 25 23 21 28 28 H 1.48498 * 109.46811 * 119.99910 * 25 23 21 29 29 H 1.09005 * 109.47453 * 292.09626 * 1 2 3 30 30 H 1.09003 * 109.47649 * 52.09627 * 1 2 3 31 31 H 1.08998 * 109.47371 * 172.10063 * 1 2 3 32 32 H 1.09004 * 109.47176 * 240.00574 * 2 1 3 33 33 H 1.08997 * 109.47557 * 120.00460 * 2 1 3 34 34 H 0.97006 * 119.99628 * 20.14932 * 7 5 3 35 35 H 1.07998 * 126.06197 * 180.10753 * 13 11 10 36 36 H 1.08998 * 109.47248 * 35.12340 * 16 15 14 37 37 H 1.09003 * 109.46819 * 155.12904 * 16 15 14 38 38 H 1.08997 * 109.47458 * 59.99807 * 17 16 15 39 39 H 1.09006 * 109.47482 * 180.02562 * 17 16 15 40 40 H 1.09005 * 109.47400 * 300.00194 * 17 16 15 41 41 H 1.09006 * 111.00193 * 277.23303 * 18 5 3 42 42 H 1.08997 * 111.00871 * 153.38155 * 18 5 3 43 43 H 1.09004 * 110.36996 * 204.15502 * 19 18 5 44 44 H 1.08997 * 110.46099 * 81.88417 * 19 18 5 45 45 H 0.97007 * 119.99985 * 354.40023 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6131 1.9888 -0.8411 5 6 3.5802 1.4576 -0.0951 6 1 3.9941 0.5133 0.2587 7 7 4.0154 1.7345 -1.4662 8 6 5.2608 1.4005 -1.8585 9 8 5.9906 0.7836 -1.1057 10 6 5.7373 1.7816 -3.1962 11 6 5.7074 1.0045 -4.3427 12 17 5.1023 -0.6149 -4.5015 13 6 6.2661 1.8031 -5.3451 14 7 6.5977 2.9489 -4.8075 15 7 6.3046 2.9724 -3.5573 16 6 6.5413 4.1026 -2.6558 17 6 7.9749 4.0399 -2.1249 18 6 3.9776 2.6203 0.8524 19 6 2.9089 2.4928 1.9664 20 7 1.6741 2.1021 1.2620 21 6 0.3979 2.3134 1.7115 22 1 -0.4218 2.3549 1.0097 23 6 0.1580 2.4741 3.0692 24 7 0.9593 1.9133 3.9500 25 14 -1.3021 3.4863 3.6463 26 1 -2.0417 4.0049 2.4675 27 1 -0.8208 4.6248 4.4693 28 1 -2.2048 2.6335 4.4605 29 1 -0.3634 0.3866 0.9522 30 1 -0.3634 0.6313 -0.8109 31 1 -0.3634 -1.0179 -0.1412 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.4071 2.1583 -2.0918 35 1 6.4034 1.5224 -6.3789 36 1 6.3953 5.0367 -3.1981 37 1 5.8422 4.0539 -1.8209 38 1 8.6740 4.0884 -2.9597 39 1 8.1509 4.8806 -1.4537 40 1 8.1211 3.1057 -1.5825 41 1 3.9000 3.5818 0.3448 42 1 4.9801 2.4720 1.2538 43 1 2.7712 3.4489 2.4714 44 1 3.1960 1.7238 2.6836 45 1 1.6686 1.3219 3.6531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087585150.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:23 Heat of formation + Delta-G solvation = 35.987460 kcal Electronic energy + Delta-G solvation = -28294.746560 eV Core-core repulsion = 24374.680561 eV Total energy + Delta-G solvation = -3920.065999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.76524 -41.11150 -39.46887 -37.71365 -35.91153 -35.59806 -34.34714 -33.76433 -32.06149 -30.86679 -30.37301 -28.56144 -26.47008 -25.28960 -24.41082 -23.47486 -22.77782 -21.88118 -21.74778 -20.89153 -19.44580 -19.18177 -17.93542 -17.36476 -17.01674 -16.54203 -16.15892 -16.07911 -15.77469 -15.50626 -15.36457 -15.14037 -14.94209 -14.65007 -14.41512 -14.06408 -13.93904 -13.80168 -13.39837 -13.15981 -12.92245 -12.86133 -12.80851 -12.69672 -12.57131 -12.37951 -12.21091 -11.90315 -11.85782 -11.76691 -11.63502 -11.61011 -11.46371 -11.38328 -10.45329 -10.41530 -10.29273 -9.91042 -8.92770 -8.19896 -5.28420 0.27167 0.61846 1.06940 1.36639 1.57418 1.62151 1.68297 1.83506 1.94864 2.67844 3.21742 3.26933 3.39714 3.51253 3.66891 3.71090 3.84769 3.87075 4.06220 4.10340 4.17316 4.24909 4.26832 4.36280 4.41800 4.54656 4.61641 4.65286 4.71353 4.80964 4.90184 4.96756 5.05999 5.07382 5.09529 5.11090 5.19559 5.27559 5.46770 5.50316 5.62864 5.84791 6.18357 6.39878 6.76481 6.81476 6.96574 7.76017 8.35971 9.08443 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015822 B = 0.003218 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.283069 B = 8697.818310 C = 9682.786340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.121 4.121 3 C 0.157 3.843 4 H 0.053 0.947 5 C 0.150 3.850 6 H 0.081 0.919 7 N -0.686 5.686 8 C 0.600 3.400 9 O -0.548 6.548 10 C -0.025 4.025 11 C -0.125 4.125 12 Cl -0.021 7.021 13 C 0.027 3.973 14 N -0.274 5.274 15 N -0.256 5.256 16 C 0.105 3.895 17 C -0.166 4.166 18 C -0.126 4.126 19 C 0.148 3.852 20 N -0.605 5.605 21 C -0.315 4.315 22 H 0.065 0.935 23 C -0.078 4.078 24 N -0.946 5.946 25 Si 1.111 2.889 26 H -0.270 1.270 27 H -0.293 1.293 28 H -0.297 1.297 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.031 0.969 34 H 0.415 0.585 35 H 0.225 0.775 36 H 0.133 0.867 37 H 0.104 0.896 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.044 0.956 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.029 0.971 44 H 0.002 0.998 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.734 3.626 -19.258 22.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 C 0.050 3.950 4 H 0.070 0.930 5 C 0.044 3.956 6 H 0.099 0.901 7 N -0.337 5.337 8 C 0.383 3.617 9 O -0.424 6.424 10 C -0.156 4.156 11 C -0.163 4.163 12 Cl 0.007 6.993 13 C -0.150 4.150 14 N -0.105 5.105 15 N -0.045 5.045 16 C -0.013 4.013 17 C -0.223 4.223 18 C -0.166 4.166 19 C 0.022 3.978 20 N -0.331 5.331 21 C -0.444 4.444 22 H 0.083 0.917 23 C -0.274 4.274 24 N -0.589 5.589 25 Si 0.937 3.063 26 H -0.195 1.195 27 H -0.219 1.219 28 H -0.225 1.225 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.252 0.748 35 H 0.241 0.759 36 H 0.151 0.849 37 H 0.122 0.878 38 H 0.088 0.912 39 H 0.126 0.874 40 H 0.063 0.937 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.047 0.953 44 H 0.020 0.980 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.834 4.888 -17.510 21.162 hybrid contribution 0.060 -1.898 -0.850 2.080 sum 10.893 2.990 -18.360 21.557 Atomic orbital electron populations 1.21772 0.95587 1.00233 1.02375 1.21845 0.97071 0.97271 0.99840 1.21283 0.90827 0.92446 0.90442 0.92965 1.21815 0.94427 0.98625 0.80696 0.90056 1.45802 1.13552 1.60947 1.13375 1.16943 0.82074 0.78885 0.83799 1.90864 1.56877 1.40380 1.54299 1.21079 1.08940 0.90551 0.95004 1.21463 1.10465 0.90493 0.93892 1.98366 1.86162 1.17061 1.97677 1.24014 1.01077 0.88474 1.01434 1.73243 1.21056 1.23487 0.92709 1.46038 1.40881 1.11012 1.06587 1.22467 1.00131 0.86619 0.92104 1.22149 0.94058 1.03751 1.02387 1.23062 0.98361 0.98713 0.96428 1.21382 0.86271 0.96589 0.93570 1.44747 1.01590 1.66231 1.20515 1.19832 0.84674 1.47161 0.92699 0.91684 1.26938 1.05742 1.01945 0.92792 1.70834 1.21424 1.30145 1.36493 0.82898 0.72865 0.75082 0.75408 1.19484 1.21938 1.22476 0.92731 0.93034 0.93246 0.91487 0.94988 0.74785 0.75859 0.84853 0.87820 0.91197 0.87358 0.93702 0.89502 0.90437 0.95294 0.97994 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 8.96 71.98 0.65 -4.64 16 2 C -0.12 -4.43 5.46 30.59 0.17 -4.27 16 3 C 0.16 5.75 3.00 45.34 0.14 5.88 16 4 H 0.05 1.81 7.69 -2.39 -0.02 1.80 16 5 C 0.15 4.82 2.80 46.18 0.13 4.95 16 6 H 0.08 2.96 7.33 -2.38 -0.02 2.94 16 7 N -0.69 -17.61 5.20 -440.55 -2.29 -19.90 16 8 C 0.60 16.68 6.91 86.55 0.60 17.28 16 9 O -0.55 -19.41 16.81 -4.17 -0.07 -19.48 16 10 C -0.02 -0.59 6.72 40.76 0.27 -0.32 16 11 C -0.12 -2.77 6.89 22.72 0.16 -2.62 16 12 Cl -0.02 -0.47 29.24 -2.72 -0.08 -0.55 16 13 C 0.03 0.49 12.04 85.22 1.03 1.52 16 14 N -0.27 -5.46 11.89 -57.06 -0.68 -6.14 16 15 N -0.26 -5.15 3.35 -334.60 -1.12 -6.27 16 16 C 0.11 1.52 6.91 86.38 0.60 2.11 16 17 C -0.17 -2.32 10.24 71.98 0.74 -1.58 16 18 C -0.13 -4.18 6.77 31.99 0.22 -3.96 16 19 C 0.15 6.54 5.53 86.85 0.48 7.02 16 20 N -0.60 -27.83 2.94 -668.26 -1.97 -29.79 16 21 C -0.31 -16.22 7.30 84.03 0.61 -15.61 16 22 H 0.07 3.33 7.11 -2.92 -0.02 3.31 16 23 C -0.08 -4.23 5.13 84.86 0.44 -3.79 16 24 N -0.95 -56.38 13.04 21.65 0.28 -56.10 16 25 Si 1.11 49.55 30.00 68.60 2.06 51.61 16 26 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 28 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 29 H 0.05 2.45 5.46 -2.38 -0.01 2.44 16 30 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.41 8.86 8.31 -92.70 -0.77 8.09 16 35 H 0.23 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.10 1.48 7.65 -2.39 -0.02 1.46 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 42 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 44 H 0.00 0.11 6.79 -2.39 -0.02 0.10 16 45 H 0.25 15.51 6.31 -92.70 -0.58 14.93 16 Total: -1.00 -68.05 382.73 2.77 -65.28 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.42 Total: 19.35 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 6.21 Total: 1.98 kcal Atomic # 7 Polarization: -112.42 SS G_CDS: -5.78 Total: -118.20 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.07 Total: -19.48 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 2.06 Total: 51.61 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.08 Total: -0.55 kcal Total: -68.05 2.77 -65.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087585150.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.272 kcal (2) G-P(sol) polarization free energy of solvation -68.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds