Wall clock time and date at job start Sat Apr 11 2020 06:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47358 * 2 1 4 4 H 1.09005 * 109.87387 * 53.86699 * 3 2 1 5 5 C 1.54325 * 109.88381 * 292.84962 * 3 2 1 6 6 H 1.09006 * 110.71706 * 336.75050 * 5 3 2 7 7 N 1.46501 * 110.72200 * 100.02408 * 5 3 2 8 8 C 1.34772 * 119.99995 * 205.00375 * 7 5 3 9 9 O 1.21486 * 120.00018 * 359.97438 * 8 7 5 10 10 C 1.48455 * 120.00090 * 179.97438 * 8 7 5 11 11 C 1.39535 * 120.55332 * 179.72276 * 10 8 7 12 12 C 1.38762 * 118.26644 * 179.74113 * 11 10 8 13 13 C 1.50693 * 120.42781 * 180.26112 * 12 11 10 14 14 F 1.39899 * 109.47244 * 210.27235 * 13 12 11 15 15 F 1.39897 * 109.47102 * 330.27708 * 13 12 11 16 16 N 1.32208 * 119.14449 * 0.52866 * 12 11 10 17 17 C 1.31887 * 121.03565 * 359.73162 * 16 12 11 18 18 N 1.31579 * 121.91853 * 359.97438 * 17 16 12 19 19 C 1.55403 * 102.83075 * 218.48248 * 5 3 2 20 20 C 1.54913 * 101.66650 * 35.33174 * 19 5 3 21 21 N 1.47020 * 109.88610 * 174.88059 * 3 2 1 22 22 C 1.36938 * 125.64850 * 298.39484 * 21 3 2 23 23 H 1.08000 * 119.99891 * 345.36467 * 22 21 3 24 24 C 1.38808 * 120.00181 * 165.36389 * 22 21 3 25 25 N 1.31620 * 120.00105 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00057 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47163 * 90.00275 * 26 24 22 28 28 H 1.48502 * 109.47178 * 209.99979 * 26 24 22 29 29 H 1.48498 * 109.47247 * 329.99923 * 26 24 22 30 30 H 1.09003 * 109.46925 * 65.52325 * 1 2 3 31 31 H 1.09001 * 109.47217 * 185.52412 * 1 2 3 32 32 H 1.08998 * 109.46791 * 305.52553 * 1 2 3 33 33 H 1.08994 * 109.47151 * 239.99723 * 2 1 3 34 34 H 1.09005 * 109.46948 * 119.99839 * 2 1 3 35 35 H 0.96998 * 119.99668 * 25.00240 * 7 5 3 36 36 H 1.08007 * 120.86539 * 359.97438 * 11 10 8 37 37 H 1.09010 * 109.47219 * 90.27580 * 13 12 11 38 38 H 1.08001 * 119.03775 * 179.97438 * 17 16 12 39 39 H 1.09004 * 110.88947 * 277.26572 * 19 5 3 40 40 H 1.08993 * 111.04100 * 153.46860 * 19 5 3 41 41 H 1.09001 * 110.36983 * 204.23777 * 20 19 5 42 42 H 1.09004 * 110.36222 * 81.91171 * 20 19 5 43 43 H 0.96999 * 120.00150 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5937 1.9933 0.8279 5 6 1.6837 2.1252 -1.3374 6 1 1.5340 1.3828 -2.1214 7 7 0.4962 2.9700 -1.1879 8 6 -0.2742 3.2452 -2.2589 9 8 0.0164 2.7931 -3.3484 10 6 -1.4778 4.1008 -2.1073 11 6 -2.2803 4.3978 -3.2095 12 6 -3.3971 5.1975 -3.0128 13 6 -4.3008 5.5439 -4.1679 14 9 -4.8766 6.8000 -3.9491 15 9 -3.5550 5.5725 -5.3512 16 7 -3.6551 5.6561 -1.7999 17 6 -2.8724 5.3605 -0.7805 18 7 -1.8066 4.6014 -0.9189 19 6 2.9428 2.9875 -1.6308 20 6 4.0756 2.0852 -1.0810 21 7 3.5050 1.4548 0.1234 22 6 4.2210 0.9618 1.1814 23 1 3.7224 0.7354 2.1122 24 6 5.5877 0.7530 1.0575 25 7 6.1954 1.0284 -0.0771 26 14 6.5646 0.0810 2.5010 27 1 6.5836 -1.4024 2.4382 28 1 7.9558 0.5969 2.4403 29 1 5.9310 0.5146 3.7722 30 1 -0.3633 0.4258 -0.9353 31 1 -0.3634 -1.0229 0.0989 32 1 -0.3633 0.5971 0.8364 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.2644 3.3312 -0.3180 36 1 -2.0406 4.0121 -4.1895 37 1 -5.0870 4.7935 -4.2519 38 1 -3.1133 5.7529 0.1965 39 1 2.9002 3.9337 -1.0912 40 1 3.0615 3.1551 -2.7012 41 1 4.9459 2.6866 -0.8183 42 1 4.3456 1.3258 -1.8148 43 1 7.1505 0.8828 -0.1636 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087622966.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:33 Heat of formation + Delta-G solvation = -59.731805 kcal Electronic energy + Delta-G solvation = -29448.109997 eV Core-core repulsion = 24972.096620 eV Total energy + Delta-G solvation = -4476.013378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.53733 -47.54018 -41.72600 -39.71252 -37.79836 -34.89665 -34.05756 -32.97476 -32.79117 -31.71995 -29.10777 -28.20834 -26.89982 -25.46326 -24.40159 -23.92945 -22.27216 -21.00019 -20.30133 -19.91581 -18.69565 -18.51055 -18.10250 -17.34462 -16.91607 -16.28791 -16.04176 -15.97173 -15.65071 -15.37359 -14.80337 -14.51026 -14.33678 -14.14377 -14.03396 -13.84938 -13.80931 -13.43071 -13.24182 -12.74676 -12.18268 -12.10273 -11.99830 -11.72816 -11.57006 -11.30700 -11.19689 -10.94215 -10.88540 -10.68771 -10.65435 -10.50277 -10.31307 -10.23309 -10.10408 -9.86913 -9.73109 -9.69387 -8.78998 -8.62158 -6.84855 -5.79007 -3.15570 -0.04178 0.17565 2.44451 2.59655 2.81874 3.31086 3.36758 3.41643 3.42392 3.43870 3.49138 3.69990 4.08226 4.30153 4.39350 4.43358 4.49465 4.87578 5.01049 5.20110 5.31055 5.41862 5.50470 5.58775 5.69743 5.73353 5.79043 6.00337 6.12994 6.17189 6.20197 6.36112 6.39610 6.47602 6.59595 6.64954 6.88738 7.05664 7.28216 7.46027 7.51741 7.58178 7.75010 8.05746 8.22790 9.14285 9.75167 10.42493 11.33034 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.025618 B = 0.002327 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.728204 B =12027.456108 C =12266.347411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.037 0.963 5 C 0.133 3.867 6 H 0.099 0.901 7 N -0.683 5.683 8 C 0.565 3.435 9 O -0.522 6.522 10 C 0.147 3.853 11 C -0.141 4.141 12 C 0.097 3.903 13 C 0.330 3.670 14 F -0.181 7.181 15 F -0.186 7.186 16 N -0.481 5.481 17 C 0.302 3.698 18 N -0.481 5.481 19 C -0.157 4.157 20 C 0.175 3.825 21 N -0.593 5.593 22 C -0.228 4.228 23 H 0.076 0.924 24 C -0.003 4.003 25 N -0.916 5.916 26 Si 0.910 3.090 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.410 0.590 36 H 0.171 0.829 37 H 0.139 0.861 38 H 0.212 0.788 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.029 0.971 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.438 7.699 -5.278 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.055 0.945 5 C 0.029 3.971 6 H 0.117 0.883 7 N -0.333 5.333 8 C 0.347 3.653 9 O -0.397 6.397 10 C -0.002 4.002 11 C -0.164 4.164 12 C -0.052 4.052 13 C 0.276 3.724 14 F -0.162 7.162 15 F -0.167 7.167 16 N -0.195 5.195 17 C 0.014 3.986 18 N -0.197 5.197 19 C -0.196 4.196 20 C 0.049 3.951 21 N -0.318 5.318 22 C -0.357 4.357 23 H 0.093 0.907 24 C -0.200 4.200 25 N -0.563 5.563 26 Si 0.741 3.259 27 H -0.215 1.215 28 H -0.217 1.217 29 H -0.206 1.206 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.246 0.754 36 H 0.188 0.812 37 H 0.156 0.844 38 H 0.229 0.771 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.047 0.953 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.126 7.685 -5.120 23.056 hybrid contribution 0.640 -0.401 0.370 0.841 sum -20.486 7.284 -4.750 22.255 Atomic orbital electron populations 1.21769 0.97317 1.00547 1.00806 1.22023 0.93511 0.99100 1.02546 1.21074 0.87392 0.93447 0.92779 0.94528 1.22330 0.82904 0.92466 0.99412 0.88337 1.45943 1.26284 1.49916 1.11127 1.17639 0.81811 0.80703 0.85179 1.90826 1.71295 1.51957 1.25660 1.21888 0.95169 0.94149 0.88966 1.22698 0.93763 0.97343 1.02607 1.22204 0.94344 0.94449 0.94210 1.20052 0.89034 0.84752 0.78588 1.93064 1.84773 1.43756 1.94652 1.93070 1.78735 1.96856 1.48087 1.68028 1.31348 1.20874 0.99283 1.25120 0.85287 0.90181 0.97988 1.68422 1.17425 1.08841 1.24994 1.23496 0.96394 0.99199 1.00543 1.21440 0.92912 0.93089 0.87627 1.44436 0.98399 1.69222 1.19740 1.18932 0.90082 1.36427 0.90231 0.90666 1.24911 0.97106 1.00874 0.97102 1.69920 1.09407 1.52929 1.23997 0.86151 0.79443 0.78816 0.81523 1.21500 1.21676 1.20623 0.93606 0.93621 0.93342 0.92351 0.91484 0.75372 0.81159 0.84354 0.77130 0.91882 0.91728 0.90674 0.95280 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.65 37.16 0.36 -1.75 16 2 C -0.13 -2.38 5.43 -26.73 -0.15 -2.52 16 3 C 0.16 3.09 2.91 -66.96 -0.19 2.90 16 4 H 0.04 0.69 7.71 -51.93 -0.40 0.29 16 5 C 0.13 2.29 2.10 -65.96 -0.14 2.15 16 6 H 0.10 1.81 7.18 -51.93 -0.37 1.44 16 7 N -0.68 -9.76 4.96 -52.65 -0.26 -10.02 16 8 C 0.56 8.03 7.83 -12.05 -0.09 7.93 16 9 O -0.52 -8.80 16.07 5.38 0.09 -8.71 16 10 C 0.15 1.72 6.79 -82.63 -0.56 1.16 16 11 C -0.14 -1.41 9.07 -38.90 -0.35 -1.77 16 12 C 0.10 0.87 6.61 -82.24 -0.54 0.32 16 13 C 0.33 2.27 5.74 36.00 0.21 2.47 16 14 F -0.18 -1.62 17.09 2.25 0.04 -1.58 16 15 F -0.19 -1.53 16.55 2.25 0.04 -1.50 16 16 N -0.48 -4.49 10.08 -10.81 -0.11 -4.60 16 17 C 0.30 2.57 12.27 -92.26 -1.13 1.44 16 18 N -0.48 -5.02 9.70 -11.14 -0.11 -5.13 16 19 C -0.16 -2.95 6.78 -24.45 -0.17 -3.11 16 20 C 0.17 4.09 5.41 -2.53 -0.01 4.08 16 21 N -0.59 -14.25 3.13 -162.57 -0.51 -14.76 16 22 C -0.23 -6.05 9.71 -15.06 -0.15 -6.19 16 23 H 0.08 1.94 7.83 -52.49 -0.41 1.52 16 24 C 0.00 -0.08 5.47 -17.43 -0.10 -0.17 16 25 N -0.92 -26.13 10.57 55.49 0.59 -25.54 16 26 Si 0.91 21.49 29.55 -169.99 -5.02 16.46 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 30 H 0.04 0.65 7.48 -51.93 -0.39 0.26 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.11 8.02 -51.93 -0.42 0.70 16 34 H 0.07 1.30 7.84 -51.93 -0.41 0.89 16 35 H 0.41 5.31 7.75 -40.82 -0.32 5.00 16 36 H 0.17 1.59 7.37 -52.48 -0.39 1.20 16 37 H 0.14 0.41 8.14 -51.92 -0.42 -0.02 16 38 H 0.21 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.08 1.96 6.93 -51.93 -0.36 1.60 16 42 H 0.03 0.74 8.06 -51.93 -0.42 0.32 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 368.06 15.07 5.55 5.55 Total: -1.00 -31.18 368.06 -8.28 -39.46 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -5.55 Total: 3.42 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: -3.02 Total: 6.94 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -0.40 Total: -60.04 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.08 Total: -3.07 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.18 -8.28 -39.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087622966.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.272 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds