Wall clock time and date at job start Sat Apr 11 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47358 * 2 1 4 4 H 1.09005 * 109.87387 * 53.86699 * 3 2 1 5 5 C 1.54325 * 109.88381 * 292.84962 * 3 2 1 6 6 H 1.09006 * 110.71706 * 336.75050 * 5 3 2 7 7 N 1.46501 * 110.72200 * 100.02408 * 5 3 2 8 8 C 1.34772 * 119.99995 * 205.00375 * 7 5 3 9 9 O 1.21486 * 120.00018 * 359.97438 * 8 7 5 10 10 C 1.48455 * 120.00090 * 179.97438 * 8 7 5 11 11 C 1.39535 * 120.55332 * 179.72276 * 10 8 7 12 12 C 1.38762 * 118.26644 * 179.74113 * 11 10 8 13 13 C 1.50693 * 120.42781 * 180.26112 * 12 11 10 14 14 F 1.39899 * 109.47244 * 210.27235 * 13 12 11 15 15 F 1.39897 * 109.47102 * 330.27708 * 13 12 11 16 16 N 1.32208 * 119.14449 * 0.52866 * 12 11 10 17 17 C 1.31887 * 121.03565 * 359.73162 * 16 12 11 18 18 N 1.31579 * 121.91853 * 359.97438 * 17 16 12 19 19 C 1.55403 * 102.83075 * 218.48248 * 5 3 2 20 20 C 1.54913 * 101.66650 * 35.33174 * 19 5 3 21 21 N 1.47020 * 109.88610 * 174.88059 * 3 2 1 22 22 C 1.36938 * 125.64850 * 298.39484 * 21 3 2 23 23 H 1.08000 * 119.99891 * 345.36467 * 22 21 3 24 24 C 1.38808 * 120.00181 * 165.36389 * 22 21 3 25 25 N 1.31620 * 120.00105 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00057 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47163 * 90.00275 * 26 24 22 28 28 H 1.48502 * 109.47178 * 209.99979 * 26 24 22 29 29 H 1.48498 * 109.47247 * 329.99923 * 26 24 22 30 30 H 1.09003 * 109.46925 * 65.52325 * 1 2 3 31 31 H 1.09001 * 109.47217 * 185.52412 * 1 2 3 32 32 H 1.08998 * 109.46791 * 305.52553 * 1 2 3 33 33 H 1.08994 * 109.47151 * 239.99723 * 2 1 3 34 34 H 1.09005 * 109.46948 * 119.99839 * 2 1 3 35 35 H 0.96998 * 119.99668 * 25.00240 * 7 5 3 36 36 H 1.08007 * 120.86539 * 359.97438 * 11 10 8 37 37 H 1.09010 * 109.47219 * 90.27580 * 13 12 11 38 38 H 1.08001 * 119.03775 * 179.97438 * 17 16 12 39 39 H 1.09004 * 110.88947 * 277.26572 * 19 5 3 40 40 H 1.08993 * 111.04100 * 153.46860 * 19 5 3 41 41 H 1.09001 * 110.36983 * 204.23777 * 20 19 5 42 42 H 1.09004 * 110.36222 * 81.91171 * 20 19 5 43 43 H 0.96999 * 120.00150 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5937 1.9933 0.8279 5 6 1.6837 2.1252 -1.3374 6 1 1.5340 1.3828 -2.1214 7 7 0.4962 2.9700 -1.1879 8 6 -0.2742 3.2452 -2.2589 9 8 0.0164 2.7931 -3.3484 10 6 -1.4778 4.1008 -2.1073 11 6 -2.2803 4.3978 -3.2095 12 6 -3.3971 5.1975 -3.0128 13 6 -4.3008 5.5439 -4.1679 14 9 -4.8766 6.8000 -3.9491 15 9 -3.5550 5.5725 -5.3512 16 7 -3.6551 5.6561 -1.7999 17 6 -2.8724 5.3605 -0.7805 18 7 -1.8066 4.6014 -0.9189 19 6 2.9428 2.9875 -1.6308 20 6 4.0756 2.0852 -1.0810 21 7 3.5050 1.4548 0.1234 22 6 4.2210 0.9618 1.1814 23 1 3.7224 0.7354 2.1122 24 6 5.5877 0.7530 1.0575 25 7 6.1954 1.0284 -0.0771 26 14 6.5646 0.0810 2.5010 27 1 6.5836 -1.4024 2.4382 28 1 7.9558 0.5969 2.4403 29 1 5.9310 0.5146 3.7722 30 1 -0.3633 0.4258 -0.9353 31 1 -0.3634 -1.0229 0.0989 32 1 -0.3633 0.5971 0.8364 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.2644 3.3312 -0.3180 36 1 -2.0406 4.0121 -4.1895 37 1 -5.0870 4.7935 -4.2519 38 1 -3.1133 5.7529 0.1965 39 1 2.9002 3.9337 -1.0912 40 1 3.0615 3.1551 -2.7012 41 1 4.9459 2.6866 -0.8183 42 1 4.3456 1.3258 -1.8148 43 1 7.1505 0.8828 -0.1636 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087622966.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:32 Heat of formation + Delta-G solvation = -78.971128 kcal Electronic energy + Delta-G solvation = -29448.944277 eV Core-core repulsion = 24972.096620 eV Total energy + Delta-G solvation = -4476.847657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.11812 -48.13529 -42.51286 -40.95394 -39.31075 -35.90033 -35.39557 -34.28084 -33.73875 -33.43560 -30.87625 -28.92658 -28.28138 -26.78799 -25.77125 -24.81419 -23.62313 -22.35354 -21.77746 -21.37709 -19.64531 -19.30844 -18.75255 -18.63903 -18.03847 -17.50081 -16.97930 -16.74778 -16.73268 -16.56846 -16.16448 -15.77716 -15.59577 -15.43570 -15.23165 -14.93443 -14.68735 -14.45128 -14.34546 -14.02934 -13.81059 -13.57363 -13.26787 -12.88115 -12.74895 -12.73440 -12.64570 -12.29675 -12.24626 -12.07800 -12.03039 -12.00829 -11.95543 -11.60941 -11.55501 -11.39167 -11.05745 -10.69026 -10.63874 -10.12182 -8.82761 -7.85356 -5.23149 -0.86609 -0.51659 1.47153 1.48060 1.49118 1.57390 1.67017 2.06443 2.48422 2.50782 2.68523 2.87284 3.05531 3.34228 3.37428 3.55939 3.64222 3.79764 3.80393 3.85743 3.86204 4.12947 4.16820 4.34611 4.36124 4.39796 4.58561 4.62169 4.72765 4.81099 4.92808 4.99563 5.09119 5.18468 5.24658 5.40892 5.44572 5.48905 5.56694 5.62645 5.72148 6.23608 6.29628 6.63671 6.92948 7.09575 7.76843 8.43615 9.25984 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.025618 B = 0.002327 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.728204 B =12027.456108 C =12266.347411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.126 4.126 3 C 0.159 3.841 4 H 0.051 0.949 5 C 0.152 3.848 6 H 0.089 0.911 7 N -0.676 5.676 8 C 0.569 3.431 9 O -0.551 6.551 10 C 0.134 3.866 11 C -0.143 4.143 12 C 0.102 3.898 13 C 0.329 3.671 14 F -0.193 7.193 15 F -0.195 7.195 16 N -0.486 5.486 17 C 0.305 3.695 18 N -0.488 5.488 19 C -0.142 4.142 20 C 0.182 3.818 21 N -0.612 5.612 22 C -0.231 4.231 23 H 0.082 0.918 24 C -0.062 4.062 25 N -0.949 5.949 26 Si 0.974 3.026 27 H -0.288 1.288 28 H -0.297 1.297 29 H -0.267 1.267 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.039 0.961 34 H 0.050 0.950 35 H 0.419 0.581 36 H 0.173 0.827 37 H 0.185 0.815 38 H 0.247 0.753 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.041 0.959 42 H -0.003 1.003 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.422 8.375 -4.341 26.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.166 4.166 3 C 0.052 3.948 4 H 0.068 0.932 5 C 0.047 3.953 6 H 0.107 0.893 7 N -0.326 5.326 8 C 0.353 3.647 9 O -0.428 6.428 10 C -0.014 4.014 11 C -0.166 4.166 12 C -0.048 4.048 13 C 0.275 3.725 14 F -0.174 7.174 15 F -0.176 7.176 16 N -0.201 5.201 17 C 0.018 3.982 18 N -0.205 5.205 19 C -0.182 4.182 20 C 0.056 3.944 21 N -0.337 5.337 22 C -0.360 4.360 23 H 0.100 0.900 24 C -0.255 4.255 25 N -0.597 5.597 26 Si 0.802 3.198 27 H -0.215 1.215 28 H -0.224 1.224 29 H -0.192 1.192 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.257 0.743 36 H 0.191 0.809 37 H 0.202 0.798 38 H 0.263 0.737 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.060 0.940 42 H 0.015 0.985 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -24.165 8.375 -4.156 25.911 hybrid contribution 1.474 -0.557 0.074 1.578 sum -22.691 7.818 -4.082 24.345 Atomic orbital electron populations 1.21646 0.93996 1.01947 1.01547 1.21903 0.96308 0.97533 1.00827 1.21241 0.84739 0.94668 0.94159 0.93184 1.21870 0.83450 0.92075 0.97891 0.89339 1.45699 1.25370 1.49674 1.11883 1.17941 0.82166 0.80243 0.84358 1.90813 1.72207 1.53086 1.26693 1.21449 0.94734 0.94999 0.90220 1.22728 0.93922 0.97646 1.02274 1.22536 0.93975 0.93488 0.94824 1.20522 0.89484 0.85124 0.77342 1.93040 1.84850 1.44866 1.94675 1.93054 1.79171 1.96887 1.48533 1.68137 1.31544 1.20808 0.99587 1.25847 0.84200 0.89046 0.99118 1.68412 1.18301 1.09391 1.24377 1.23304 0.95359 0.98723 1.00803 1.21141 0.93590 0.92501 0.87129 1.44666 1.00578 1.69261 1.19203 1.19285 0.90483 1.35100 0.91156 0.90018 1.25694 0.98305 1.02000 0.99535 1.70127 1.09048 1.54612 1.25932 0.85148 0.77577 0.77816 0.79210 1.21511 1.22382 1.19154 0.93381 0.92112 0.91817 0.94192 0.93124 0.74272 0.80909 0.79812 0.73709 0.90943 0.90961 0.94029 0.98451 0.94371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 9.65 71.98 0.69 -2.85 16 2 C -0.13 -4.47 5.43 30.59 0.17 -4.30 16 3 C 0.16 6.02 2.91 45.34 0.13 6.15 16 4 H 0.05 1.80 7.71 -2.38 -0.02 1.78 16 5 C 0.15 5.19 2.10 46.27 0.10 5.28 16 6 H 0.09 3.25 7.18 -2.38 -0.02 3.24 16 7 N -0.68 -18.29 4.96 -438.78 -2.18 -20.47 16 8 C 0.57 15.43 7.83 86.97 0.68 16.11 16 9 O -0.55 -18.18 16.07 -3.67 -0.06 -18.24 16 10 C 0.13 2.88 6.79 41.99 0.29 3.17 16 11 C -0.14 -2.59 9.07 22.71 0.21 -2.39 16 12 C 0.10 1.56 6.61 42.63 0.28 1.84 16 13 C 0.33 3.63 5.74 71.23 0.41 4.03 16 14 F -0.19 -3.00 17.09 44.97 0.77 -2.23 16 15 F -0.20 -2.83 16.55 44.97 0.74 -2.09 16 16 N -0.49 -7.66 10.08 -188.12 -1.90 -9.56 16 17 C 0.30 4.24 12.27 180.92 2.22 6.47 16 18 N -0.49 -8.96 9.70 -189.15 -1.84 -10.79 16 19 C -0.14 -5.39 6.78 32.07 0.22 -5.17 16 20 C 0.18 8.89 5.41 86.86 0.47 9.36 16 21 N -0.61 -29.97 3.13 -668.26 -2.09 -32.06 16 22 C -0.23 -12.40 9.71 84.03 0.82 -11.58 16 23 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 24 C -0.06 -3.44 5.47 84.86 0.46 -2.98 16 25 N -0.95 -56.31 10.57 21.65 0.23 -56.08 16 26 Si 0.97 44.88 29.55 68.60 2.03 46.91 16 27 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 28 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 29 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 30 H 0.05 1.26 7.48 -2.39 -0.02 1.24 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.04 1.54 8.02 -2.39 -0.02 1.52 16 34 H 0.05 1.95 7.84 -2.38 -0.02 1.93 16 35 H 0.42 9.95 7.75 -92.71 -0.72 9.23 16 36 H 0.17 3.00 7.37 -2.91 -0.02 2.97 16 37 H 0.19 0.37 8.14 -2.38 -0.02 0.35 16 38 H 0.25 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.04 2.28 6.93 -2.39 -0.02 2.27 16 42 H 0.00 -0.14 8.06 -2.38 -0.02 -0.16 16 43 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -69.53 368.06 3.19 -66.34 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.34 Total: 15.12 kcal Atomic # 6 Polarization: 16.00 SS G_CDS: 7.14 Total: 23.14 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -7.77 Total: -128.95 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.06 Total: -18.24 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 1.51 Total: -4.32 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -69.53 3.19 -66.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087622966.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.632 kcal (2) G-P(sol) polarization free energy of solvation -69.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds