Wall clock time and date at job start Sat Apr 11 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34237 * 126.28124 * 2 1 4 4 H 0.96999 * 125.73333 * 0.03602 * 3 2 1 5 5 N 1.39928 * 108.52536 * 180.02562 * 3 2 1 6 6 C 1.30532 * 108.89288 * 359.74783 * 5 3 2 7 7 Cl 1.73606 * 126.00412 * 180.26595 * 6 5 3 8 8 C 1.38071 * 126.28172 * 179.97438 * 2 1 3 9 9 C 1.47381 * 126.42267 * 359.96890 * 8 2 1 10 10 O 1.21606 * 120.00308 * 95.29813 * 9 8 2 11 11 N 1.34778 * 119.99606 * 275.29202 * 9 8 2 12 12 C 1.46964 * 120.35782 * 174.79071 * 11 9 8 13 13 C 1.52348 * 109.06582 * 68.33503 * 12 11 9 14 14 C 1.53784 * 109.15891 * 72.68107 * 13 12 11 15 15 C 1.52451 * 109.44106 * 282.15467 * 14 13 12 16 16 C 1.53961 * 110.71971 * 113.72977 * 15 14 13 17 17 C 1.52937 * 109.75087 * 315.64177 * 16 15 14 18 18 H 1.08996 * 109.46077 * 47.10314 * 17 16 15 19 19 N 1.46503 * 109.53936 * 167.18151 * 17 16 15 20 20 C 1.36939 * 119.99789 * 204.90116 * 19 17 16 21 21 H 1.07997 * 119.99642 * 359.97438 * 20 19 17 22 22 C 1.38809 * 119.99812 * 179.97438 * 20 19 17 23 23 N 1.31620 * 120.00386 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99681 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46872 * 60.00234 * 24 22 20 26 26 H 1.48504 * 109.46750 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47338 * 300.00256 * 24 22 20 28 28 C 1.45324 * 120.36537 * 354.77557 * 11 9 8 29 29 H 1.09000 * 109.47020 * 274.98012 * 1 2 3 30 30 H 1.08996 * 109.47025 * 34.98611 * 1 2 3 31 31 H 1.09003 * 109.47158 * 154.98381 * 1 2 3 32 32 H 1.08998 * 109.53427 * 188.20827 * 12 11 9 33 33 H 1.08993 * 109.53849 * 308.45572 * 12 11 9 34 34 H 1.09003 * 109.52079 * 192.58756 * 13 12 11 35 35 H 1.09001 * 109.51915 * 312.71041 * 13 12 11 36 36 H 1.08994 * 109.48449 * 42.14748 * 14 13 12 37 37 H 1.09006 * 109.47845 * 162.16986 * 14 13 12 38 38 H 1.08992 * 109.23391 * 234.05415 * 15 14 13 39 39 H 1.09003 * 109.22299 * 353.45519 * 15 14 13 40 40 H 1.09003 * 109.42627 * 75.71601 * 16 15 14 41 41 H 1.09002 * 109.43260 * 195.56387 * 16 15 14 42 42 H 0.96999 * 120.00073 * 24.89626 * 19 17 16 43 43 H 0.96997 * 120.00118 * 180.02562 * 23 22 20 44 44 H 1.09006 * 109.67007 * 343.09367 * 28 11 9 45 45 H 1.08993 * 109.67717 * 103.59312 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0018 2.0047 0.0005 5 7 3.6339 0.6554 -0.0006 6 6 3.6598 -0.6497 0.0045 7 17 5.0842 -1.6421 0.0125 8 6 2.3240 -1.1130 0.0005 9 6 1.8858 -2.5202 0.0018 10 8 1.7974 -3.1305 -1.0463 11 7 1.5832 -3.1306 1.1647 12 6 1.0371 -4.4950 1.1672 13 6 2.1159 -5.4637 0.6993 14 6 3.1691 -5.6205 1.8089 15 6 4.0909 -4.4062 1.8088 16 6 3.9140 -3.5881 3.1010 17 6 2.4253 -3.4370 3.4174 18 1 1.9344 -4.4058 3.3253 19 7 2.2633 -2.9344 4.7839 20 6 1.1076 -3.1867 5.4737 21 1 0.3154 -3.7558 5.0102 22 6 0.9543 -2.7109 6.7687 23 7 1.9196 -2.0169 7.3335 24 14 -0.6226 -3.0546 7.7094 25 1 -0.8104 -4.5217 7.8416 26 1 -0.5369 -2.4423 9.0596 27 1 -1.7742 -2.4724 6.9746 28 6 1.7936 -2.4470 2.4297 29 1 -0.3633 0.0892 1.0238 30 1 -0.3633 0.8419 -0.5892 31 1 -0.3633 -0.9313 -0.4346 32 1 0.7224 -4.7598 2.1766 33 1 0.1829 -4.5470 0.4923 34 1 1.6665 -6.4331 0.4840 35 1 2.5897 -5.0737 -0.2016 36 1 2.6706 -5.6982 2.7750 37 1 3.7554 -6.5217 1.6288 38 1 5.1255 -4.7408 1.7346 39 1 3.8549 -3.7766 0.9509 40 1 4.4094 -4.1009 3.9255 41 1 4.3583 -2.6015 2.9693 42 1 2.9747 -2.4230 5.2001 43 1 1.8126 -1.6848 8.2385 44 1 2.4625 -1.5991 2.2817 45 1 0.8385 -2.0971 2.8211 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088325561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:08 Heat of formation + Delta-G solvation = 49.370688 kcal Electronic energy + Delta-G solvation = -29480.400261 eV Core-core repulsion = 25560.914603 eV Total energy + Delta-G solvation = -3919.485658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.69400 -39.90524 -37.38999 -36.86561 -34.54975 -33.96110 -32.82830 -32.30676 -31.34441 -29.90958 -27.86517 -26.83442 -26.05490 -24.06949 -22.88376 -22.05693 -21.47290 -21.40927 -19.31991 -18.68663 -17.53574 -17.16962 -16.56873 -16.02273 -15.57915 -15.32929 -15.14622 -14.71059 -14.26224 -14.09078 -13.84307 -13.52002 -13.36655 -13.30472 -13.18651 -12.85241 -12.58765 -12.40196 -12.21561 -12.01689 -11.83245 -11.60030 -11.32259 -11.23157 -10.89397 -10.84228 -10.74039 -10.61942 -10.38929 -10.20619 -10.14243 -9.79428 -9.75816 -9.57270 -9.52533 -8.99948 -8.76450 -8.18126 -7.03027 -5.83235 -3.12943 1.38498 1.42340 2.10632 2.69833 2.78919 3.37802 3.41120 3.44406 3.44984 4.34349 4.52286 4.65766 4.78001 4.98797 5.13258 5.18826 5.21511 5.23267 5.42935 5.51241 5.53980 5.55742 5.58028 5.69142 5.76725 5.80252 5.90102 5.96961 6.01299 6.07847 6.18872 6.31695 6.37056 6.38769 6.51204 6.64249 6.69059 6.80410 6.82600 6.89511 7.04454 7.15135 7.61530 7.74717 8.34216 8.41377 9.46127 10.03104 10.37840 11.38867 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011063 B = 0.004563 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.437875 B = 6135.127381 C = 6795.094043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.141 3.859 3 N -0.448 5.448 4 H 0.447 0.553 5 N -0.277 5.277 6 C 0.161 3.839 7 Cl 0.022 6.978 8 C -0.260 4.260 9 C 0.595 3.405 10 O -0.540 6.540 11 N -0.586 5.586 12 C 0.116 3.884 13 C -0.138 4.138 14 C -0.126 4.126 15 C -0.119 4.119 16 C -0.122 4.122 17 C 0.158 3.842 18 H 0.069 0.931 19 N -0.719 5.719 20 C -0.243 4.243 21 H 0.070 0.930 22 C -0.009 4.009 23 N -0.930 5.930 24 Si 0.905 3.095 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.087 3.913 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.069 0.931 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.217 2.063 -15.702 15.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.009 3.991 3 N -0.157 5.157 4 H 0.293 0.707 5 N -0.102 5.102 6 C -0.032 4.032 7 Cl 0.050 6.950 8 C -0.275 4.275 9 C 0.380 3.620 10 O -0.417 6.417 11 N -0.317 5.317 12 C -0.006 4.006 13 C -0.177 4.177 14 C -0.164 4.164 15 C -0.157 4.157 16 C -0.160 4.160 17 C 0.047 3.953 18 H 0.086 0.914 19 N -0.359 5.359 20 C -0.374 4.374 21 H 0.088 0.912 22 C -0.206 4.206 23 N -0.578 5.578 24 Si 0.736 3.264 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.039 4.039 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.218 0.782 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.422 2.619 -16.129 16.346 hybrid contribution -0.956 -0.029 0.893 1.308 sum -0.533 2.591 -15.236 15.464 Atomic orbital electron populations 1.20624 0.85777 1.04864 1.04574 1.21383 0.94831 0.85998 0.96893 1.45783 1.03009 1.08593 1.58341 0.70666 1.77130 0.96540 1.10748 1.25826 1.22521 0.88796 0.90452 1.01445 1.98419 1.35308 1.64605 1.96686 1.19768 0.91075 0.94733 1.21912 1.17124 0.77084 0.84282 0.83489 1.90738 1.53364 1.65942 1.31702 1.47841 1.62147 1.15462 1.06283 1.21550 0.95839 0.80720 1.02454 1.22060 0.97313 0.98788 0.99493 1.21829 0.97371 0.97638 0.99528 1.21738 0.98378 0.96823 0.98753 1.22008 0.97406 0.99649 0.96959 1.20922 0.93335 0.95701 0.85328 0.91401 1.42408 1.19189 1.64739 1.09601 1.19157 0.94193 1.28517 0.95522 0.91231 1.24736 0.97891 1.00602 0.97352 1.69650 1.32426 1.40925 1.14771 0.86315 0.83049 0.77799 0.79272 1.21193 1.21727 1.21304 1.22673 1.01490 0.97107 0.82584 0.88671 0.90034 0.88998 0.89046 0.91539 0.91587 0.90300 0.90516 0.92734 0.93292 0.91480 0.91782 0.92644 0.78165 0.93392 0.91293 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 10.29 36.00 0.37 -0.47 16 2 C 0.14 1.65 7.29 -81.60 -0.60 1.05 16 3 N -0.45 -4.82 7.28 33.86 0.25 -4.58 16 4 H 0.45 3.03 8.96 -182.73 -1.64 1.39 16 5 N -0.28 -3.90 12.64 33.18 0.42 -3.49 16 6 C 0.16 2.41 7.73 -16.90 -0.13 2.28 16 7 Cl 0.02 0.31 27.82 -51.86 -1.44 -1.13 16 8 C -0.26 -3.81 3.95 -105.04 -0.42 -4.22 16 9 C 0.59 9.35 5.48 -12.54 -0.07 9.28 16 10 O -0.54 -9.68 15.66 5.27 0.08 -9.60 16 11 N -0.59 -8.79 1.68 -175.65 -0.30 -9.09 16 12 C 0.12 1.62 5.21 -4.12 -0.02 1.59 16 13 C -0.14 -1.84 5.54 -26.66 -0.15 -1.99 16 14 C -0.13 -1.73 5.49 -26.60 -0.15 -1.88 16 15 C -0.12 -1.74 5.41 -26.51 -0.14 -1.89 16 16 C -0.12 -2.03 5.22 -26.26 -0.14 -2.17 16 17 C 0.16 2.89 2.30 -67.73 -0.16 2.73 16 18 H 0.07 1.25 3.29 -51.93 -0.17 1.07 16 19 N -0.72 -16.73 5.13 -53.23 -0.27 -17.00 16 20 C -0.24 -6.25 9.88 -15.06 -0.15 -6.40 16 21 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 23 N -0.93 -26.95 13.06 55.49 0.72 -26.23 16 24 Si 0.90 21.36 29.55 -169.99 -5.02 16.33 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 27 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 28 C 0.09 1.46 5.44 -4.44 -0.02 1.44 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.84 7.84 -51.93 -0.41 0.44 16 32 H 0.09 1.28 6.07 -51.93 -0.32 0.97 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.20 6.02 -51.93 -0.31 0.88 16 36 H 0.08 1.13 5.47 -51.93 -0.28 0.85 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.02 3.95 -51.93 -0.20 0.82 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.05 0.94 7.87 -51.93 -0.41 0.53 16 42 H 0.38 9.75 7.80 -40.82 -0.32 9.44 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.07 1.20 6.12 -51.93 -0.32 0.88 16 45 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -31.44 363.47 -9.25 -40.68 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -7.30 Total: 9.60 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -1.86 Total: -0.98 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: 0.82 Total: -60.38 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -1.44 Total: -1.13 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.44 -9.25 -40.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088325561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.054 kcal (2) G-P(sol) polarization free energy of solvation -31.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds