Wall clock time and date at job start Sat Apr 11 2020 05:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34229 * 126.28071 * 2 1 4 4 H 0.96996 * 125.73706 * 0.23867 * 3 2 1 5 5 N 1.39935 * 108.52176 * 179.97438 * 3 2 1 6 6 C 1.30526 * 108.89441 * 0.02562 * 5 3 2 7 7 Cl 1.73598 * 126.00486 * 180.02562 * 6 5 3 8 8 C 1.38073 * 126.27883 * 179.97438 * 2 1 3 9 9 C 1.47379 * 126.42057 * 359.97438 * 8 2 1 10 10 O 1.21606 * 120.00543 * 269.99988 * 9 8 2 11 11 N 1.34779 * 120.00148 * 90.00663 * 9 8 2 12 12 C 1.45335 * 120.36049 * 359.97438 * 11 9 8 13 13 C 1.53443 * 108.41248 * 136.65974 * 12 11 9 14 14 C 1.52875 * 109.38688 * 282.27909 * 13 12 11 15 15 C 1.53946 * 109.73381 * 72.89761 * 14 13 12 16 16 C 1.52446 * 110.73184 * 44.36136 * 15 14 13 17 17 C 1.53796 * 109.41007 * 246.27627 * 16 15 14 18 18 H 1.09008 * 109.52323 * 317.93476 * 17 16 15 19 19 N 1.46497 * 109.52732 * 197.80299 * 17 16 15 20 20 C 1.36938 * 119.99742 * 154.99822 * 19 17 16 21 21 H 1.07994 * 120.00521 * 0.02562 * 20 19 17 22 22 C 1.38814 * 119.99770 * 179.97438 * 20 19 17 23 23 N 1.31623 * 119.99877 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00278 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46992 * 59.99927 * 24 22 20 26 26 H 1.48497 * 109.47435 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46947 * 300.00465 * 24 22 20 28 28 C 1.46961 * 120.36735 * 179.71861 * 11 9 8 29 29 H 1.08996 * 109.47195 * 90.02427 * 1 2 3 30 30 H 1.09003 * 109.47254 * 210.02689 * 1 2 3 31 31 H 1.08998 * 109.47048 * 330.02727 * 1 2 3 32 32 H 1.08999 * 109.67471 * 256.38968 * 12 11 9 33 33 H 1.08997 * 109.67709 * 16.93439 * 12 11 9 34 34 H 1.09004 * 109.48682 * 42.25592 * 13 12 11 35 35 H 1.09006 * 109.48874 * 162.30202 * 13 12 11 36 36 H 1.09002 * 109.42935 * 192.97539 * 14 13 12 37 37 H 1.09001 * 109.42885 * 312.86661 * 14 13 12 38 38 H 1.08994 * 109.23074 * 164.68435 * 15 14 13 39 39 H 1.09009 * 109.22525 * 284.04877 * 15 14 13 40 40 H 1.09005 * 109.48324 * 6.25785 * 16 15 14 41 41 H 1.08999 * 109.48079 * 126.29526 * 16 15 14 42 42 H 0.96996 * 120.00152 * 334.99833 * 19 17 16 43 43 H 0.97007 * 119.99950 * 180.02562 * 23 22 20 44 44 H 1.09003 * 109.53065 * 51.53137 * 28 11 9 45 45 H 1.09000 * 109.52896 * 171.74906 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0018 2.0046 0.0033 5 7 3.6340 0.6552 0.0006 6 6 3.6598 -0.6498 0.0004 7 17 5.0841 -1.6422 0.0016 8 6 2.3240 -1.1131 0.0005 9 6 1.8857 -2.5202 0.0017 10 8 1.7052 -3.1001 1.0552 11 7 1.6850 -3.1645 -1.1650 12 6 1.8979 -2.4791 -2.4288 13 6 2.6494 -3.4264 -3.3734 14 6 4.1291 -3.4566 -2.9902 15 6 4.3110 -4.2460 -1.6811 16 6 3.4881 -5.5291 -1.7058 17 6 2.3772 -5.4443 -0.6456 18 1 2.7791 -5.0088 0.2693 19 7 1.8650 -6.7877 -0.3645 20 6 1.2769 -7.0575 0.8424 21 1 1.1903 -6.2799 1.5868 22 6 0.7911 -8.3303 1.1085 23 7 0.8962 -9.2779 0.2011 24 14 -0.0117 -8.6984 2.7545 25 1 -1.1937 -7.8180 2.9366 26 1 -0.4423 -10.1191 2.7887 27 1 0.9630 -8.4506 3.8471 28 6 1.2539 -4.5694 -1.1733 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3634 -0.8898 0.5143 31 1 -0.3633 0.8902 0.5134 32 1 0.9367 -2.2103 -2.8669 33 1 2.4908 -1.5796 -2.2631 34 1 2.2317 -4.4298 -3.2901 35 1 2.5467 -3.0737 -4.3996 36 1 4.6998 -3.9366 -3.7852 37 1 4.4884 -2.4370 -2.8508 38 1 5.3642 -4.4975 -1.5569 39 1 3.9886 -3.6291 -0.8422 40 1 3.0408 -5.6552 -2.6918 41 1 4.1342 -6.3795 -1.4880 42 1 1.9424 -7.4860 -1.0332 43 1 0.5564 -10.1673 0.3869 44 1 0.3785 -4.6858 -0.5342 45 1 1.0054 -4.8683 -2.1916 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088325562.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:11 Heat of formation + Delta-G solvation = 54.414863 kcal Electronic energy + Delta-G solvation = -29386.835673 eV Core-core repulsion = 25467.568746 eV Total energy + Delta-G solvation = -3919.266926 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.80638 -39.88482 -37.27849 -36.95611 -34.92046 -33.75017 -32.94745 -32.07806 -31.41099 -29.57667 -28.17641 -26.98965 -26.11372 -23.93804 -22.89988 -22.17351 -21.79525 -20.62710 -19.65387 -18.75987 -17.60239 -16.99669 -16.59840 -16.05081 -15.67719 -15.43336 -15.19623 -14.69227 -14.41112 -14.17790 -13.68652 -13.56116 -13.42886 -13.38727 -13.01323 -12.80564 -12.63335 -12.43851 -12.19603 -12.06038 -11.86191 -11.73222 -11.39232 -11.02585 -10.96410 -10.82347 -10.71247 -10.46090 -10.36449 -10.13349 -10.01262 -9.86593 -9.66904 -9.49151 -9.43205 -8.90935 -8.87979 -8.15575 -6.84264 -5.65418 -2.93394 1.27150 1.30161 1.99912 2.63596 2.81540 3.40592 3.54699 3.57445 3.61130 4.23706 4.53877 4.66382 4.72561 4.82212 4.96063 5.05017 5.08044 5.18175 5.37518 5.43206 5.46166 5.48746 5.50821 5.66398 5.69230 5.74573 5.85152 5.91778 5.96267 6.07809 6.16066 6.23551 6.27224 6.47444 6.56686 6.61891 6.69506 6.78464 6.82487 6.97945 7.02338 7.28485 7.76039 7.91963 8.51407 8.55066 9.65405 10.20885 10.56483 11.57269 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013259 B = 0.004170 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.324279 B = 6712.429255 C = 7445.397437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.136 3.864 3 N -0.450 5.450 4 H 0.446 0.554 5 N -0.279 5.279 6 C 0.157 3.843 7 Cl 0.028 6.972 8 C -0.257 4.257 9 C 0.587 3.413 10 O -0.512 6.512 11 N -0.592 5.592 12 C 0.112 3.888 13 C -0.150 4.150 14 C -0.112 4.112 15 C -0.124 4.124 16 C -0.130 4.130 17 C 0.163 3.837 18 H 0.063 0.937 19 N -0.719 5.719 20 C -0.230 4.230 21 H 0.074 0.926 22 C -0.015 4.015 23 N -0.937 5.937 24 Si 0.905 3.095 25 H -0.286 1.286 26 H -0.293 1.293 27 H -0.286 1.286 28 C 0.099 3.901 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.383 0.617 43 H 0.253 0.747 44 H 0.076 0.924 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.541 22.946 -8.644 24.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.005 3.995 3 N -0.160 5.160 4 H 0.292 0.708 5 N -0.105 5.105 6 C -0.035 4.035 7 Cl 0.055 6.945 8 C -0.272 4.272 9 C 0.371 3.629 10 O -0.387 6.387 11 N -0.325 5.325 12 C -0.012 4.012 13 C -0.187 4.187 14 C -0.150 4.150 15 C -0.162 4.162 16 C -0.168 4.168 17 C 0.052 3.948 18 H 0.081 0.919 19 N -0.360 5.360 20 C -0.362 4.362 21 H 0.092 0.908 22 C -0.210 4.210 23 N -0.587 5.587 24 Si 0.736 3.264 25 H -0.213 1.213 26 H -0.219 1.219 27 H -0.213 1.213 28 C -0.024 4.024 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.217 0.783 43 H 0.063 0.937 44 H 0.094 0.906 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.218 23.514 -7.887 25.009 hybrid contribution -0.801 -0.659 0.567 1.183 sum 2.416 22.854 -7.320 24.119 Atomic orbital electron populations 1.20627 0.85709 1.05178 1.04332 1.21406 0.94843 0.85960 0.97317 1.45810 1.03045 1.08531 1.58590 0.70755 1.77135 0.96515 1.10771 1.26041 1.22610 0.89093 0.90424 1.01419 1.98439 1.35250 1.64153 1.96610 1.19940 0.91043 0.95018 1.21208 1.17100 0.77907 0.83952 0.83939 1.90878 1.49823 1.67180 1.30776 1.47866 1.66681 1.13122 1.04874 1.21489 0.99369 0.95729 0.84622 1.22329 0.96430 1.01795 0.98191 1.21694 0.95558 0.99939 0.97806 1.21821 0.99196 0.97086 0.98087 1.22096 0.98080 0.97061 0.99566 1.20612 0.91010 0.87075 0.96056 0.91886 1.42388 1.70512 1.05953 1.17097 1.19324 1.29358 0.95088 0.92381 0.90776 1.24704 1.02171 0.96147 0.97989 1.69659 1.52530 1.02499 1.33967 0.86291 0.79397 0.76682 0.84021 1.21329 1.21891 1.21303 1.22553 1.00605 0.77665 1.01625 0.89073 0.88541 0.90066 0.92339 0.90789 0.89094 0.91469 0.92378 0.92544 0.93230 0.90947 0.91930 0.91903 0.78342 0.93679 0.90550 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 10.25 36.01 0.37 -0.31 16 2 C 0.14 1.35 7.29 -81.60 -0.60 0.76 16 3 N -0.45 -3.88 7.28 33.86 0.25 -3.63 16 4 H 0.45 2.02 8.96 -182.73 -1.64 0.38 16 5 N -0.28 -3.38 12.64 33.17 0.42 -2.96 16 6 C 0.16 2.13 7.67 -16.91 -0.13 2.00 16 7 Cl 0.03 0.37 26.62 -51.86 -1.38 -1.01 16 8 C -0.26 -3.49 3.94 -105.04 -0.41 -3.90 16 9 C 0.59 9.73 5.51 -12.54 -0.07 9.66 16 10 O -0.51 -10.99 15.85 5.27 0.08 -10.91 16 11 N -0.59 -8.79 1.69 -175.95 -0.30 -9.09 16 12 C 0.11 1.26 5.90 -4.44 -0.03 1.23 16 13 C -0.15 -1.64 5.45 -26.57 -0.14 -1.78 16 14 C -0.11 -1.31 5.75 -26.30 -0.15 -1.46 16 15 C -0.12 -1.81 4.93 -26.52 -0.13 -1.94 16 16 C -0.13 -2.22 4.97 -26.60 -0.13 -2.35 16 17 C 0.16 3.38 2.38 -68.11 -0.16 3.21 16 18 H 0.06 1.50 6.13 -51.92 -0.32 1.18 16 19 N -0.72 -18.33 5.12 -53.60 -0.27 -18.61 16 20 C -0.23 -6.63 9.90 -15.06 -0.15 -6.77 16 21 H 0.07 2.18 7.83 -52.49 -0.41 1.77 16 22 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 23 N -0.94 -28.66 13.06 55.49 0.72 -27.94 16 24 Si 0.90 23.35 29.55 -169.99 -5.02 18.33 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 C 0.10 1.78 4.72 -4.38 -0.02 1.76 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.86 7.96 -51.93 -0.41 0.45 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.81 5.98 -51.93 -0.31 0.50 16 34 H 0.09 1.13 3.35 -51.93 -0.17 0.96 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.63 7.87 -51.93 -0.41 0.22 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.14 3.17 -51.92 -0.16 0.98 16 40 H 0.06 0.97 5.47 -51.93 -0.28 0.69 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.38 10.19 7.80 -40.82 -0.32 9.87 16 43 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.08 1.61 8.05 -51.93 -0.42 1.19 16 45 H 0.07 1.20 6.06 -51.93 -0.31 0.89 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -34.83 361.24 -9.18 -44.01 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -7.27 Total: 6.78 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -1.85 Total: -0.42 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: 0.82 Total: -62.22 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.33 kcal Atomic # 17 Polarization: 0.37 SS G_CDS: -1.38 Total: -1.01 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.83 -9.18 -44.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088325562.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.426 kcal (2) G-P(sol) polarization free energy of solvation -34.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds