Wall clock time and date at job start Sat Apr 11 2020 05:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 N 1.30420 * 125.97239 * 269.69122 * 3 2 1 5 5 N 1.39923 * 108.95795 * 179.84672 * 4 3 2 6 6 C 1.46502 * 125.75153 * 180.19393 * 5 4 3 7 7 C 1.34352 * 108.50064 * 0.42286 * 5 4 3 8 8 Cl 1.73602 * 126.31794 * 179.75245 * 7 5 4 9 9 C 1.38274 * 107.36094 * 359.74960 * 7 5 4 10 10 C 1.47304 * 126.43266 * 179.97438 * 9 7 5 11 11 O 1.21616 * 119.99997 * 270.02588 * 10 9 7 12 12 N 1.34773 * 119.99993 * 90.03184 * 10 9 7 13 13 C 1.46492 * 120.00424 * 179.97438 * 12 10 9 14 14 H 1.08997 * 110.64067 * 323.31215 * 13 12 10 15 15 C 1.55163 * 110.71941 * 86.44966 * 13 12 10 16 16 C 1.54911 * 101.58050 * 153.86767 * 15 13 12 17 17 N 1.47426 * 104.83416 * 322.99416 * 16 15 13 18 18 C 1.36935 * 125.64956 * 204.16759 * 17 16 15 19 19 H 1.07990 * 120.00424 * 179.97438 * 18 17 16 20 20 C 1.38822 * 119.99804 * 359.97005 * 18 17 16 21 21 N 1.31616 * 119.99988 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99888 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46809 * 60.00015 * 22 20 18 24 24 H 1.48497 * 109.46776 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.46971 * 299.99993 * 22 20 18 26 26 C 1.47019 * 108.70178 * 24.12295 * 17 16 15 27 27 H 1.08997 * 109.88653 * 239.52205 * 26 17 16 28 28 C 1.53000 * 109.87782 * 118.35921 * 26 17 16 29 29 H 1.09001 * 109.46801 * 300.00442 * 1 2 3 30 30 H 1.09001 * 109.46998 * 60.00038 * 1 2 3 31 31 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47002 * 119.99404 * 2 1 3 33 33 H 1.08993 * 109.46955 * 239.99842 * 2 1 3 34 34 H 1.08998 * 109.47058 * 270.26411 * 6 5 4 35 35 H 1.09003 * 109.46475 * 30.26293 * 6 5 4 36 36 H 1.09000 * 109.47183 * 150.26403 * 6 5 4 37 37 H 0.97006 * 119.99494 * 359.97438 * 12 10 9 38 38 H 1.08999 * 111.00507 * 271.94025 * 15 13 12 39 39 H 1.09001 * 111.00553 * 35.75829 * 15 13 12 40 40 H 1.09005 * 110.36625 * 81.83199 * 16 15 13 41 41 H 1.09003 * 110.36642 * 204.15082 * 16 15 13 42 42 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 43 43 H 1.08993 * 109.47554 * 302.19445 * 28 26 17 44 44 H 1.09000 * 109.46950 * 62.19690 * 28 26 17 45 45 H 1.09005 * 109.47025 * 182.19189 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2931 2.1412 -1.0555 5 7 2.7337 3.4045 -0.6461 6 6 3.1222 4.5043 -1.5325 7 6 2.7453 3.4374 0.6970 8 17 3.2203 4.7809 1.6885 9 6 2.3091 2.2037 1.1437 10 6 2.1612 1.7840 2.5479 11 8 3.0932 1.2599 3.1273 12 7 0.9930 1.9806 3.1906 13 6 0.8456 1.5628 4.5869 14 1 1.3846 0.6329 4.7686 15 6 1.3353 2.6779 5.5482 16 6 0.5085 2.3750 6.8227 17 7 -0.8079 1.9376 6.3235 18 6 -1.9873 2.0066 7.0159 19 1 -2.9024 1.6590 6.5599 20 6 -2.0065 2.5235 8.3042 21 7 -0.8911 2.9466 8.8602 22 14 -3.6152 2.6170 9.2491 23 1 -4.1797 1.2519 9.4016 24 1 -3.3676 3.2026 10.5911 25 1 -4.5769 3.4701 8.5059 26 6 -0.6450 1.4160 4.9586 27 1 -1.2583 1.9922 4.2658 28 6 -1.0496 -0.0588 4.9135 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5137 0.8901 33 1 1.8933 -0.5138 -0.8899 34 1 4.1875 4.4349 -1.7523 35 1 2.5547 4.4403 -2.4610 36 1 2.9133 5.4560 -1.0438 37 1 0.2497 2.3990 2.7285 38 1 2.4035 2.5837 5.7440 39 1 1.0981 3.6659 5.1536 40 1 0.9789 1.5789 7.3998 41 1 0.4043 3.2742 7.4299 42 1 -0.9046 3.3081 9.7602 43 1 -0.4448 -0.6234 5.6230 44 1 -2.1030 -0.1547 5.1769 45 1 -0.8895 -0.4489 3.9083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088965545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:15 Heat of formation + Delta-G solvation = 57.416503 kcal Electronic energy + Delta-G solvation = -28023.704347 eV Core-core repulsion = 24104.567582 eV Total energy + Delta-G solvation = -3919.136766 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.73012 -39.32795 -37.41380 -37.26325 -35.04072 -33.92697 -32.22217 -31.93844 -30.51744 -30.24858 -28.56692 -27.26275 -24.96921 -23.99200 -23.82187 -22.43370 -20.78825 -20.15074 -20.00358 -19.49565 -17.77306 -16.80654 -16.51356 -16.12253 -15.78790 -15.46592 -14.74495 -14.61529 -14.11425 -14.00617 -13.88176 -13.63474 -13.43267 -13.32351 -13.11041 -12.80004 -12.73080 -12.10789 -12.01701 -11.97533 -11.92507 -11.74950 -11.53825 -11.39327 -11.11848 -10.90234 -10.83423 -10.81265 -10.48268 -10.39557 -10.10952 -9.78695 -9.69379 -9.56489 -9.52829 -8.87236 -8.65669 -8.56352 -6.85588 -5.63655 -3.06457 1.03965 1.17380 2.09469 2.18597 2.70696 3.40614 3.43511 3.46290 3.48871 4.03549 4.43314 4.49846 4.69484 4.75158 4.96587 4.97438 5.07316 5.12982 5.23176 5.30955 5.41970 5.44459 5.58099 5.67171 5.74299 5.83999 5.85549 5.97894 6.11214 6.15923 6.24910 6.29109 6.34916 6.38936 6.57866 6.64774 6.76607 6.89964 7.14833 7.17111 7.54859 7.64099 7.77604 7.87551 8.36517 8.44899 9.22325 9.83335 10.47447 11.39508 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.003076 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.676717 B = 9099.645978 C = 9956.953154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.048 4.048 3 C 0.125 3.875 4 N -0.273 5.273 5 N -0.356 5.356 6 C 0.093 3.907 7 C 0.156 3.844 8 Cl 0.016 6.984 9 C -0.251 4.251 10 C 0.596 3.404 11 O -0.530 6.530 12 N -0.703 5.703 13 C 0.136 3.864 14 H 0.093 0.907 15 C -0.153 4.153 16 C 0.153 3.847 17 N -0.595 5.595 18 C -0.220 4.220 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.921 5.921 22 Si 0.913 3.087 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.286 1.286 26 C 0.156 3.844 27 H 0.036 0.964 28 C -0.155 4.155 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.398 0.602 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.014 0.986 41 H 0.108 0.892 42 H 0.253 0.747 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.759 1.474 -21.689 22.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.088 4.088 3 C -0.042 4.042 4 N -0.096 5.096 5 N -0.138 5.138 6 C -0.048 4.048 7 C -0.001 4.001 8 Cl 0.044 6.956 9 C -0.267 4.267 10 C 0.379 3.621 11 O -0.406 6.406 12 N -0.353 5.353 13 C 0.032 3.968 14 H 0.111 0.889 15 C -0.192 4.192 16 C 0.028 3.972 17 N -0.320 5.320 18 C -0.349 4.349 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.744 3.256 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.048 3.952 27 H 0.053 0.947 28 C -0.214 4.214 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.232 0.768 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.032 0.968 41 H 0.126 0.874 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.461 1.466 -22.304 23.564 hybrid contribution -0.989 0.586 1.152 1.627 sum 6.472 2.052 -21.152 22.214 Atomic orbital electron populations 1.21729 0.93387 1.02675 1.02613 1.20107 0.96774 0.87609 1.04283 1.22305 0.96590 0.97037 0.88272 1.77253 1.21543 0.89211 1.21570 1.48350 1.50732 1.12026 1.02651 1.22062 1.02162 0.85983 0.94546 1.21971 1.02408 0.91554 0.84154 1.98456 1.89879 1.41940 1.65345 1.19885 1.17641 0.93634 0.95563 1.17025 0.82873 0.78458 0.83732 1.90797 1.39348 1.43007 1.67453 1.46063 1.14096 1.61476 1.13661 1.22181 0.97359 0.98650 0.78655 0.88917 1.23397 0.99898 0.97490 0.98439 1.21947 0.82802 1.01081 0.91339 1.44475 1.04943 1.71876 1.10715 1.18971 0.85343 1.34842 0.95697 0.90533 1.24779 0.97226 1.01448 0.97089 1.69785 1.24480 1.47635 1.15007 0.86173 0.82597 0.77687 0.79143 1.21243 1.21627 1.21219 1.20975 0.91561 0.93317 0.89344 0.94683 1.22238 1.01822 0.98009 0.99366 0.91951 0.92334 0.91384 0.89214 0.89625 0.89876 0.88250 0.88964 0.76793 0.91937 0.92022 0.96765 0.87396 0.93672 0.92908 0.92775 0.94239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.90 37.16 0.37 -0.93 16 2 C -0.05 -0.49 6.33 -27.88 -0.18 -0.66 16 3 C 0.12 1.54 6.52 -82.02 -0.53 1.01 16 4 N -0.27 -3.31 12.49 33.90 0.42 -2.89 16 5 N -0.36 -3.81 3.98 -64.32 -0.26 -4.07 16 6 C 0.09 0.56 11.28 59.85 0.67 1.24 16 7 C 0.16 1.93 7.54 -16.44 -0.12 1.80 16 8 Cl 0.02 0.18 28.56 -51.86 -1.48 -1.30 16 9 C -0.25 -3.47 5.88 -105.02 -0.62 -4.09 16 10 C 0.60 9.50 7.20 -12.58 -0.09 9.41 16 11 O -0.53 -10.36 16.83 5.26 0.09 -10.27 16 12 N -0.70 -10.69 5.20 -53.15 -0.28 -10.97 16 13 C 0.14 2.46 2.76 -66.10 -0.18 2.28 16 14 H 0.09 1.79 7.41 -51.93 -0.38 1.40 16 15 C -0.15 -3.05 6.77 -24.58 -0.17 -3.21 16 16 C 0.15 3.72 5.89 -2.53 -0.01 3.71 16 17 N -0.59 -14.66 3.13 -162.57 -0.51 -15.17 16 18 C -0.22 -5.93 9.89 -15.06 -0.15 -6.08 16 19 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 20 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 21 N -0.92 -26.51 10.09 55.49 0.56 -25.95 16 22 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.16 3.08 3.48 -66.96 -0.23 2.85 16 27 H 0.04 0.68 7.69 -51.93 -0.40 0.28 16 28 C -0.15 -2.80 9.14 37.16 0.34 -2.46 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.96 8.01 -51.93 -0.42 0.55 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.42 7.77 -51.93 -0.40 0.02 16 37 H 0.40 5.31 8.30 -40.82 -0.34 4.97 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.11 2.94 5.87 -51.93 -0.31 2.63 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 45 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 387.98 15.07 5.85 5.85 Total: -1.00 -32.54 387.98 -8.49 -41.03 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.86 Total: 2.50 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -1.00 Total: 4.49 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.06 Total: -59.05 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 17 Polarization: 0.18 SS G_CDS: -1.48 Total: -1.30 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.54 -8.49 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088965545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.449 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds