Wall clock time and date at job start Sat Apr 11 2020 05:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30849 * 125.88719 * 2 1 4 4 N 1.40082 * 108.21937 * 179.85370 * 3 2 1 5 5 C 1.46504 * 126.04035 * 180.17188 * 4 3 2 6 6 C 1.50696 * 109.46877 * 270.28705 * 5 4 3 7 7 O 1.21289 * 120.00009 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00060 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00159 * 179.97438 * 8 6 5 10 10 H 1.09004 * 110.64407 * 325.71046 * 9 8 6 11 11 C 1.55163 * 110.71845 * 88.84473 * 9 8 6 12 12 C 1.54908 * 101.57948 * 153.86612 * 11 9 8 13 13 N 1.47418 * 104.83487 * 322.99222 * 12 11 9 14 14 C 1.36939 * 125.64928 * 204.17100 * 13 12 11 15 15 H 1.07997 * 120.00250 * 169.83025 * 14 13 12 16 16 C 1.38811 * 120.00092 * 349.82829 * 14 13 12 17 17 N 1.31622 * 119.99638 * 350.47716 * 16 14 13 18 18 Si 1.86795 * 120.00467 * 170.48016 * 16 14 13 19 19 H 1.48504 * 109.47314 * 94.13320 * 18 16 14 20 20 H 1.48494 * 109.47430 * 214.13625 * 18 16 14 21 21 H 1.48506 * 109.46880 * 334.13818 * 18 16 14 22 22 C 1.47314 * 108.73591 * 24.28431 * 13 12 11 23 23 H 1.09000 * 109.85423 * 239.38984 * 22 13 12 24 24 C 1.52999 * 110.06475 * 118.12990 * 22 13 12 25 25 C 1.35049 * 107.92636 * 0.41005 * 4 3 2 26 26 C 1.50698 * 126.13465 * 179.77819 * 25 4 3 27 27 C 1.35366 * 107.72649 * 359.75909 * 25 4 3 28 28 Cl 1.73601 * 126.04586 * 180.02562 * 27 25 4 29 29 H 1.09006 * 109.47265 * 269.69058 * 1 2 3 30 30 H 1.09001 * 109.47512 * 29.69302 * 1 2 3 31 31 H 1.09003 * 109.46858 * 149.69468 * 1 2 3 32 32 H 1.09003 * 109.46645 * 30.28224 * 5 4 3 33 33 H 1.08999 * 109.47655 * 150.28649 * 5 4 3 34 34 H 0.96993 * 119.99931 * 0.02562 * 8 6 5 35 35 H 1.08999 * 111.00384 * 271.94261 * 11 9 8 36 36 H 1.09001 * 111.00093 * 35.75657 * 11 9 8 37 37 H 1.09000 * 110.36592 * 81.83515 * 12 11 9 38 38 H 1.09007 * 110.36579 * 204.15106 * 12 11 9 39 39 H 0.97003 * 119.99677 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.46870 * 302.26983 * 24 22 13 41 41 H 1.08999 * 109.47721 * 62.26395 * 24 22 13 42 42 H 1.08998 * 109.47207 * 182.27113 * 24 22 13 43 43 H 1.09003 * 109.47054 * 270.00155 * 26 25 4 44 44 H 1.09002 * 109.47753 * 30.00238 * 26 25 4 45 45 H 1.09003 * 109.47216 * 150.00200 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2740 1.0601 0.0000 4 7 3.6088 0.6350 0.0034 5 6 4.7896 1.5021 0.0081 6 6 5.1945 1.8071 -1.4111 7 8 4.5595 1.3451 -2.3354 8 7 6.2622 2.5931 -1.6532 9 6 6.6561 2.8891 -3.0328 10 1 6.4597 2.0345 -3.6803 11 6 5.9220 4.1528 -3.5541 12 6 6.9100 4.6637 -4.6324 13 7 8.2483 4.3950 -4.0757 14 6 9.3996 5.0562 -4.4110 15 1 10.2990 4.9013 -3.8335 16 6 9.4108 5.9255 -5.4931 17 7 8.3784 5.9750 -6.3081 18 14 10.8908 7.0251 -5.7928 19 1 11.8158 6.3612 -6.7462 20 1 10.4385 8.3198 -6.3621 21 1 11.5950 7.2682 -4.5081 22 6 8.1433 3.2955 -3.1009 23 1 8.4797 3.6357 -2.1215 24 6 8.9875 2.1048 -3.5596 25 6 3.6149 -0.7155 -0.0038 26 6 4.8360 -1.5986 -0.0080 27 6 2.3274 -1.1335 -0.0060 28 17 1.7892 -2.7839 -0.0142 29 1 -0.3634 -0.0055 1.0277 30 1 -0.3634 0.8927 -0.5090 31 1 -0.3633 -0.8873 -0.5186 32 1 4.5556 2.4318 0.5269 33 1 5.6093 0.9972 0.5192 34 1 6.7702 2.9622 -0.9140 35 1 4.9610 3.8915 -3.9971 36 1 5.7965 4.8876 -2.7589 37 1 6.7700 4.1167 -5.5648 38 1 6.7744 5.7330 -4.7950 39 1 8.3861 6.5828 -7.0641 40 1 8.6568 1.7841 -4.5475 41 1 10.0361 2.3989 -3.6054 42 1 8.8711 1.2831 -2.8530 43 1 5.1308 -1.8060 -1.0367 44 1 5.6519 -1.0932 0.5088 45 1 4.6087 -2.5354 0.5008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089043622.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:18 Heat of formation + Delta-G solvation = 56.793810 kcal Electronic energy + Delta-G solvation = -27343.455382 eV Core-core repulsion = 23424.291615 eV Total energy + Delta-G solvation = -3919.163768 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.68996 -39.75156 -37.66404 -36.57640 -34.37415 -34.16866 -32.36061 -31.97020 -30.49172 -30.12720 -28.68107 -27.26663 -26.44226 -24.46881 -24.04006 -21.22643 -20.72495 -20.29587 -20.05924 -19.48069 -17.48392 -17.22326 -16.76469 -15.93533 -15.53736 -15.33654 -14.75235 -14.62690 -14.21185 -14.05039 -13.93908 -13.59454 -13.51673 -13.40197 -12.92253 -12.75779 -12.68100 -12.50828 -12.24852 -12.17819 -12.05244 -11.95804 -11.64634 -11.42149 -11.18318 -10.99023 -10.82526 -10.67489 -10.61956 -10.50355 -10.12484 -10.02929 -9.92178 -9.69637 -9.30398 -8.83322 -8.63421 -8.50267 -6.90399 -5.80150 -3.14286 1.40665 1.71853 2.34884 2.46504 2.52848 3.17348 3.35464 3.41371 3.43230 4.17371 4.22183 4.42211 4.51753 4.59959 4.61709 4.80651 5.02170 5.17988 5.19509 5.36613 5.37340 5.41588 5.42925 5.51248 5.51428 5.62800 5.72495 5.75977 6.03833 6.12369 6.21686 6.22762 6.25478 6.40941 6.49015 6.55811 6.61815 6.79940 7.01952 7.38398 7.43346 7.47039 7.54803 7.72538 8.13974 8.19622 9.12057 9.73960 10.40296 11.32419 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.028316 B = 0.002178 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.618109 B =12852.616517 C =13266.589515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.093 3.907 3 N -0.272 5.272 4 N -0.347 5.347 5 C 0.114 3.886 6 C 0.494 3.506 7 O -0.520 6.520 8 N -0.711 5.711 9 C 0.137 3.863 10 H 0.094 0.906 11 C -0.154 4.154 12 C 0.174 3.826 13 N -0.594 5.594 14 C -0.229 4.229 15 H 0.076 0.924 16 C -0.005 4.005 17 N -0.916 5.916 18 Si 0.911 3.089 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.155 3.845 23 H 0.037 0.963 24 C -0.154 4.154 25 C 0.117 3.883 26 C -0.097 4.097 27 C -0.189 4.189 28 Cl -0.045 7.045 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.400 0.600 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.029 0.971 38 H 0.072 0.928 39 H 0.254 0.746 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.036 0.964 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.135 -14.324 17.257 24.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.075 4.075 3 N -0.093 5.093 4 N -0.128 5.128 5 C -0.011 4.011 6 C 0.277 3.723 7 O -0.395 6.395 8 N -0.362 5.362 9 C 0.033 3.967 10 H 0.112 0.888 11 C -0.194 4.194 12 C 0.049 3.951 13 N -0.319 5.319 14 C -0.357 4.357 15 H 0.094 0.906 16 C -0.202 4.202 17 N -0.562 5.562 18 Si 0.741 3.259 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.047 3.953 23 H 0.054 0.946 24 C -0.214 4.214 25 C -0.011 4.011 26 C -0.156 4.156 27 C -0.227 4.227 28 Cl -0.017 7.017 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.234 0.766 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.108 0.892 44 H 0.093 0.907 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.409 -13.258 16.404 23.521 hybrid contribution 1.104 -0.169 -0.024 1.117 sum -9.305 -13.427 16.380 23.134 Atomic orbital electron populations 1.20227 0.85968 1.03847 1.03235 1.22240 0.97317 0.88873 0.99021 1.77478 0.85654 1.21503 1.24699 1.47569 1.05002 1.03261 1.56966 1.21559 0.85700 0.97106 0.96761 1.20612 0.81246 0.79605 0.90875 1.90789 1.52216 1.51333 1.45192 1.46003 1.30027 1.50374 1.09807 1.22180 0.95376 0.98431 0.80743 0.88849 1.23394 0.99217 0.96224 1.00557 1.21405 0.81555 1.00544 0.91570 1.44565 1.04852 1.35831 1.46670 1.18946 0.88657 1.18736 1.09392 0.90599 1.24842 0.97960 1.01028 0.96419 1.69959 1.30131 1.39914 1.16213 0.86138 0.81758 0.80188 0.77842 1.21596 1.21600 1.20605 1.21066 0.90652 0.89323 0.94233 0.94582 1.22226 1.01209 0.97422 1.00527 1.20658 0.96272 0.84737 0.99475 1.20559 0.92464 0.98221 1.04317 1.20232 0.92020 0.86834 1.23589 1.98298 1.89783 1.15767 1.97851 0.90180 0.90378 0.90099 0.85368 0.85803 0.76609 0.91873 0.91944 0.95305 0.90959 0.93601 0.92873 0.92570 0.94485 0.89235 0.90699 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.31 36.01 0.37 -0.29 16 2 C 0.09 1.16 7.22 -82.38 -0.59 0.56 16 3 N -0.27 -3.82 12.58 33.68 0.42 -3.40 16 4 N -0.35 -4.25 3.10 -58.27 -0.18 -4.43 16 5 C 0.11 1.06 6.73 -5.19 -0.03 1.02 16 6 C 0.49 6.56 7.90 -10.99 -0.09 6.47 16 7 O -0.52 -9.50 16.12 5.55 0.09 -9.41 16 8 N -0.71 -9.03 5.19 -52.03 -0.27 -9.30 16 9 C 0.14 2.34 2.79 -66.09 -0.18 2.15 16 10 H 0.09 1.76 7.33 -51.93 -0.38 1.38 16 11 C -0.15 -2.95 6.77 -24.58 -0.17 -3.12 16 12 C 0.17 4.14 5.42 -2.53 -0.01 4.13 16 13 N -0.59 -14.30 3.14 -162.36 -0.51 -14.81 16 14 C -0.23 -6.08 9.88 -15.06 -0.15 -6.23 16 15 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 16 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 17 N -0.92 -26.38 10.69 55.49 0.59 -25.79 16 18 Si 0.91 21.50 29.56 -169.99 -5.03 16.48 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C 0.16 2.93 3.49 -66.79 -0.23 2.69 16 23 H 0.04 0.64 7.70 -51.93 -0.40 0.24 16 24 C -0.15 -2.74 9.15 37.16 0.34 -2.40 16 25 C 0.12 1.34 6.94 -82.20 -0.57 0.77 16 26 C -0.10 -0.78 9.95 36.00 0.36 -0.42 16 27 C -0.19 -2.25 6.63 -39.98 -0.27 -2.51 16 28 Cl -0.05 -0.45 28.58 -51.86 -1.48 -1.93 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.64 8.01 -51.93 -0.42 0.23 16 32 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.12 0.65 7.05 -51.93 -0.37 0.29 16 34 H 0.40 3.79 8.34 -40.82 -0.34 3.45 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 38 H 0.07 1.91 6.94 -51.93 -0.36 1.55 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.04 8.06 -51.93 -0.42 0.62 16 42 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.43 7.08 -51.93 -0.37 0.06 16 45 H 0.09 0.60 7.91 -51.93 -0.41 0.19 16 LS Contribution 386.62 15.07 5.83 5.83 Total: -1.00 -34.36 386.62 -8.67 -43.03 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.81 Total: 1.15 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -1.32 Total: 2.59 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: 0.06 Total: -57.73 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.48 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.48 Total: -1.93 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.36 -8.67 -43.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089043622.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.823 kcal (2) G-P(sol) polarization free energy of solvation -34.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds