Wall clock time and date at job start Sat Apr 11 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35364 * 126.38862 * 2 1 4 4 C 1.41500 * 105.50951 * 179.97438 * 3 2 1 5 5 C 1.47701 * 126.52222 * 179.97438 * 4 3 2 6 6 O 1.21576 * 120.00176 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00612 * 180.02562 * 5 4 3 8 8 C 1.46491 * 120.00636 * 180.02562 * 7 5 4 9 9 H 1.09008 * 110.68666 * 37.05447 * 8 7 5 10 10 C 1.55479 * 110.61255 * 160.19924 * 8 7 5 11 11 C 1.55838 * 103.33012 * 118.41492 * 10 8 7 12 12 H 1.09002 * 116.12804 * 159.23384 * 11 10 8 13 13 C 1.55384 * 105.04687 * 288.04140 * 11 10 8 14 14 C 1.54851 * 103.48452 * 72.07102 * 13 11 10 15 15 C 1.55842 * 103.44678 * 359.87944 * 14 13 11 16 16 H 1.09005 * 115.56038 * 158.81102 * 15 14 13 17 17 N 1.50236 * 101.05223 * 33.02538 * 11 10 8 18 18 C 1.36935 * 130.84320 * 126.06437 * 17 11 10 19 19 H 1.08000 * 120.00233 * 179.66489 * 18 17 11 20 20 C 1.38813 * 119.99509 * 359.66721 * 18 17 11 21 21 N 1.31614 * 120.00143 * 359.72424 * 20 18 17 22 22 Si 1.86808 * 119.99712 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47076 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47126 * 120.00243 * 22 20 18 25 25 H 1.48504 * 109.46729 * 240.00096 * 22 20 18 26 26 N 1.31807 * 106.95877 * 0.24336 * 4 3 2 27 27 N 1.28470 * 110.07603 * 359.59190 * 26 4 3 28 28 C 1.46495 * 124.88477 * 180.13065 * 27 26 4 29 29 F 1.39903 * 109.47171 * 30.33360 * 28 27 26 30 30 F 1.39905 * 109.47059 * 150.32730 * 28 27 26 31 31 H 1.09007 * 109.47011 * 90.02550 * 1 2 3 32 32 H 1.09003 * 109.46868 * 210.02199 * 1 2 3 33 33 H 1.08998 * 109.47379 * 330.02251 * 1 2 3 34 34 H 1.08009 * 127.24450 * 0.02562 * 3 2 1 35 35 H 0.97003 * 119.99438 * 0.02562 * 7 5 4 36 36 H 1.09000 * 110.60538 * 359.97438 * 10 8 7 37 37 H 1.09002 * 110.89577 * 236.96795 * 10 8 7 38 38 H 1.09000 * 110.71607 * 313.52389 * 13 11 10 39 39 H 1.08998 * 110.50327 * 190.52430 * 13 11 10 40 40 H 1.08994 * 110.63319 * 241.38609 * 14 13 11 41 41 H 1.09006 * 110.75910 * 118.42977 * 14 13 11 42 42 H 0.97001 * 120.00070 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.47599 * 270.32767 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5854 0.0006 5 6 4.8764 1.3811 0.0003 6 8 4.8213 2.5956 -0.0001 7 7 6.0731 0.7610 0.0005 8 6 7.3072 1.5502 0.0007 9 1 7.1931 2.4432 0.6153 10 6 8.5059 0.6915 0.4938 11 6 9.4668 0.6778 -0.7330 12 1 10.5101 0.4423 -0.5230 13 6 8.7736 -0.2396 -1.7781 14 6 7.5801 0.6141 -2.2728 15 6 7.7142 1.9333 -1.4541 16 1 7.2139 2.8035 -1.8791 17 7 9.2068 2.0371 -1.3176 18 6 10.0662 3.0551 -1.6343 19 1 9.6844 3.9720 -2.0583 20 6 11.4283 2.9084 -1.4102 21 7 11.8930 1.7930 -0.8884 22 14 12.6009 4.2968 -1.8428 23 1 11.8327 5.4360 -2.4061 24 1 13.3174 4.7388 -0.6195 25 1 13.5847 3.8188 -2.8473 26 7 3.5420 -0.7296 -0.0044 27 7 2.3080 -1.0871 0.0005 28 6 1.8377 -2.4745 -0.0001 29 9 2.7691 -3.2830 0.6602 30 9 0.6056 -2.5495 0.6584 31 1 -0.3633 -0.0005 -1.0277 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3634 0.8902 0.5135 34 1 2.0057 2.1260 0.0004 35 1 6.1171 -0.2081 0.0004 36 1 8.1791 -0.3194 0.7374 37 1 8.9884 1.1552 1.3543 38 1 8.4204 -1.1586 -1.3103 39 1 9.4531 -0.4628 -2.6006 40 1 6.6351 0.1186 -2.0504 41 1 7.6651 0.8147 -3.3408 42 1 12.8448 1.6904 -0.7322 43 1 1.7218 -2.8185 -1.0279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095475859.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:40 Heat of formation + Delta-G solvation = 8.845080 kcal Electronic energy + Delta-G solvation = -30009.400463 eV Core-core repulsion = 25536.360802 eV Total energy + Delta-G solvation = -4473.039661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.98493 -48.07052 -42.95774 -39.85026 -38.15689 -33.99275 -33.26707 -32.98865 -32.24304 -29.28366 -29.00407 -27.88063 -27.69405 -26.42425 -24.30144 -23.30784 -21.61219 -21.25489 -20.18063 -19.41248 -18.85205 -18.53326 -18.24429 -17.84725 -17.22842 -16.67248 -16.02491 -15.54652 -15.02826 -14.91627 -14.80880 -14.68583 -14.52486 -14.07867 -13.94618 -13.85541 -13.72219 -13.39300 -13.32012 -12.89129 -12.31994 -12.26122 -12.16453 -11.71881 -11.46754 -11.15431 -11.01423 -10.88196 -10.85060 -10.79697 -10.17315 -10.04529 -9.95474 -9.74034 -9.68725 -9.34698 -9.29089 -9.22002 -8.90287 -8.47183 -6.87943 -5.69539 -3.07359 1.16125 1.40700 1.82809 2.87582 3.30982 3.41411 3.45579 3.48440 3.49913 3.50577 3.83262 4.11364 4.45776 4.51609 4.64999 5.06037 5.16157 5.25659 5.29025 5.39767 5.42151 5.58009 5.61657 5.83677 5.88900 5.99561 6.04528 6.12308 6.18030 6.18394 6.35221 6.40085 6.58584 6.66837 6.71818 6.84576 7.00531 7.04482 7.30915 7.39979 7.56261 7.79066 7.90054 8.20353 8.46298 9.13837 9.76298 10.56957 11.40167 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.025843 B = 0.002563 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.188260 B =10923.309739 C =11585.124866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.025 3.975 3 C -0.170 4.170 4 C 0.018 3.982 5 C 0.595 3.405 6 O -0.530 6.530 7 N -0.694 5.694 8 C 0.127 3.873 9 H 0.085 0.915 10 C -0.139 4.139 11 C 0.154 3.846 12 H 0.155 0.845 13 C -0.137 4.137 14 C -0.132 4.132 15 C 0.129 3.871 16 H 0.087 0.913 17 N -0.590 5.590 18 C -0.208 4.208 19 H 0.080 0.920 20 C -0.013 4.013 21 N -0.923 5.923 22 Si 0.916 3.084 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.292 1.292 26 N -0.249 5.249 27 N -0.352 5.352 28 C 0.505 3.495 29 F -0.166 7.166 30 F -0.173 7.173 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.170 0.830 35 H 0.402 0.598 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.253 0.747 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.925 -11.015 1.566 26.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.096 4.096 3 C -0.197 4.197 4 C -0.146 4.146 5 C 0.378 3.622 6 O -0.405 6.405 7 N -0.345 5.345 8 C 0.021 3.979 9 H 0.103 0.897 10 C -0.179 4.179 11 C 0.047 3.953 12 H 0.172 0.828 13 C -0.177 4.177 14 C -0.171 4.171 15 C 0.020 3.980 16 H 0.105 0.895 17 N -0.310 5.310 18 C -0.336 4.336 19 H 0.098 0.902 20 C -0.208 4.208 21 N -0.572 5.572 22 Si 0.747 3.253 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.219 1.219 26 N -0.081 5.081 27 N -0.150 5.150 28 C 0.372 3.628 29 F -0.147 7.147 30 F -0.155 7.155 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.187 0.813 35 H 0.237 0.763 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -23.038 -11.115 1.577 25.627 hybrid contribution 0.022 0.733 -0.063 0.736 sum -23.015 -10.381 1.514 25.293 Atomic orbital electron populations 1.20716 0.86002 1.05359 1.03870 1.21454 0.95683 0.85763 1.06750 1.21665 0.90351 0.99756 1.07934 1.22346 0.95902 0.89190 1.07128 1.16828 0.81603 0.86432 0.77316 1.90811 1.86549 1.12628 1.50475 1.46128 1.05348 1.10546 1.72458 1.22821 0.81280 0.94109 0.99661 0.89699 1.23388 0.96154 0.97350 1.01042 1.23668 0.99704 0.83767 0.88156 0.82842 1.22982 0.97115 0.97091 1.00471 1.22927 0.97197 0.97689 0.99301 1.23199 0.86769 0.95360 0.92711 0.89521 1.46493 0.99334 1.13539 1.71656 1.19119 0.87206 0.93343 1.33916 0.90220 1.24697 0.96539 0.97732 1.01867 1.69447 1.12634 1.25065 1.50049 0.85958 0.80850 0.80964 0.77507 1.20542 1.21800 1.21870 1.73603 0.99891 1.15409 1.19223 1.46602 1.04839 1.06807 1.56758 1.21465 0.72265 0.74884 0.94156 1.93168 1.66089 1.71714 1.83689 1.93052 1.43006 1.95035 1.84373 0.90059 0.89505 0.89230 0.81300 0.76293 0.92662 0.91447 0.93565 0.92693 0.93042 0.93107 0.93646 0.82110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.53 10.00 36.00 0.36 -0.17 16 2 C 0.02 0.23 6.81 -82.21 -0.56 -0.33 16 3 C -0.17 -2.00 10.73 -39.36 -0.42 -2.42 16 4 C 0.02 0.26 7.13 -82.77 -0.59 -0.33 16 5 C 0.60 10.09 7.82 -12.39 -0.10 10.00 16 6 O -0.53 -10.59 16.66 5.30 0.09 -10.50 16 7 N -0.69 -11.42 3.63 -52.05 -0.19 -11.61 16 8 C 0.13 2.47 3.10 -65.10 -0.20 2.27 16 9 H 0.08 1.81 7.71 -51.92 -0.40 1.41 16 10 C -0.14 -2.74 6.23 -23.90 -0.15 -2.88 16 11 C 0.15 3.52 4.69 -63.06 -0.30 3.22 16 12 H 0.15 4.00 5.52 -51.93 -0.29 3.71 16 13 C -0.14 -2.73 6.42 -24.49 -0.16 -2.88 16 14 C -0.13 -2.53 6.32 -24.24 -0.15 -2.68 16 15 C 0.13 2.77 5.35 -62.80 -0.34 2.43 16 16 H 0.09 1.93 8.14 -51.93 -0.42 1.50 16 17 N -0.59 -14.89 2.99 -146.09 -0.44 -15.33 16 18 C -0.21 -5.78 10.59 -15.06 -0.16 -5.94 16 19 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.92 -26.37 10.46 55.49 0.58 -25.79 16 22 Si 0.92 22.19 29.55 -169.99 -5.02 17.17 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 N -0.25 -3.20 11.42 33.42 0.38 -2.82 16 27 N -0.35 -3.50 3.68 -62.36 -0.23 -3.73 16 28 C 0.51 3.21 6.49 59.84 0.39 3.59 16 29 F -0.17 -1.44 17.26 2.25 0.04 -1.40 16 30 F -0.17 -1.03 14.35 2.25 0.03 -0.99 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.41 5.49 -51.93 -0.29 0.12 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.17 1.79 8.06 -52.48 -0.42 1.37 16 35 H 0.40 5.96 7.75 -40.82 -0.32 5.65 16 36 H 0.05 0.93 7.34 -51.93 -0.38 0.55 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.05 0.79 7.80 -51.93 -0.41 0.39 16 39 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.05 0.88 6.48 -51.93 -0.34 0.54 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.16 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 357.78 15.07 5.39 5.39 Total: -1.00 -32.94 357.78 -7.17 -40.12 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.34 Total: 6.09 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -2.47 Total: 3.40 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: 0.11 Total: -59.27 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.07 Total: -2.40 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.94 -7.17 -40.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095475859.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.963 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds