Wall clock time and date at job start Sat Apr 11 2020 05:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35372 * 126.38421 * 2 1 4 4 C 1.41496 * 105.50251 * 179.97438 * 3 2 1 5 5 C 1.47712 * 126.51601 * 179.97438 * 4 3 2 6 6 O 1.21566 * 120.00291 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99599 * 179.97438 * 5 4 3 8 8 C 1.46504 * 119.99683 * 179.97438 * 7 5 4 9 9 H 1.08998 * 110.55636 * 32.10250 * 8 7 5 10 10 C 1.54853 * 110.76292 * 269.10853 * 8 7 5 11 11 C 1.55852 * 103.44483 * 241.44582 * 10 8 7 12 12 H 1.08996 * 115.55644 * 158.81256 * 11 10 8 13 13 C 1.55842 * 105.06103 * 287.42498 * 11 10 8 14 14 C 1.58512 * 102.76037 * 72.07051 * 13 11 10 15 15 C 1.55845 * 110.62589 * 155.00195 * 8 7 5 16 16 H 1.09002 * 115.56037 * 319.83805 * 15 8 7 17 17 N 1.50235 * 101.04819 * 32.93482 * 11 10 8 18 18 C 1.36940 * 130.83182 * 125.31816 * 17 11 10 19 19 H 1.07997 * 120.00353 * 180.93251 * 18 17 11 20 20 C 1.38816 * 119.99655 * 0.93819 * 18 17 11 21 21 N 1.31621 * 120.00358 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99634 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47337 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47391 * 119.99737 * 22 20 18 25 25 H 1.48506 * 109.46930 * 239.99397 * 22 20 18 26 26 N 1.31805 * 106.96586 * 0.24126 * 4 3 2 27 27 N 1.28471 * 110.07261 * 359.59808 * 26 4 3 28 28 C 1.46501 * 124.88703 * 180.13312 * 27 26 4 29 29 F 1.39908 * 109.47040 * 30.32164 * 28 27 26 30 30 F 1.39895 * 109.47466 * 150.32148 * 28 27 26 31 31 H 1.08993 * 109.47036 * 90.02455 * 1 2 3 32 32 H 1.09000 * 109.47108 * 210.02169 * 1 2 3 33 33 H 1.09001 * 109.47202 * 330.02528 * 1 2 3 34 34 H 1.08003 * 127.24487 * 0.02562 * 3 2 1 35 35 H 0.96997 * 120.00644 * 0.02562 * 7 5 4 36 36 H 1.09000 * 110.62638 * 359.93490 * 10 8 7 37 37 H 1.08998 * 110.62456 * 122.79982 * 10 8 7 38 38 H 1.08999 * 110.62687 * 190.31497 * 13 11 10 39 39 H 1.09004 * 110.62716 * 313.17152 * 13 11 10 40 40 H 1.08995 * 110.52465 * 241.93835 * 14 13 11 41 41 H 1.08998 * 111.38761 * 118.45389 * 14 13 11 42 42 H 0.96996 * 120.00054 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.47054 * 270.32622 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6320 0.5855 0.0006 5 6 4.8764 1.3814 0.0003 6 8 4.8213 2.5958 -0.0001 7 7 6.0730 0.7611 0.0015 8 6 7.3072 1.5504 0.0006 9 1 7.1637 2.4857 0.5416 10 6 7.7821 1.8251 -1.4474 11 6 9.1791 1.1367 -1.5074 12 1 9.5398 0.8910 -2.5062 13 6 10.1164 2.0480 -0.6591 14 6 9.6302 1.7669 0.8233 15 6 8.4818 0.7335 0.6185 16 1 8.2284 0.1326 1.4920 17 7 8.9659 -0.0281 -0.5827 18 6 9.1427 -1.3717 -0.7796 19 1 8.9184 -2.0680 0.0148 20 6 9.6103 -1.8386 -2.0004 21 7 9.8833 -0.9900 -2.9688 22 14 9.8507 -3.6714 -2.2692 23 1 9.4745 -4.4064 -1.0349 24 1 8.9944 -4.1232 -3.3953 25 1 11.2750 -3.9419 -2.5911 26 7 3.5420 -0.7295 -0.0044 27 7 2.3081 -1.0870 0.0005 28 6 1.8377 -2.4744 -0.0001 29 9 2.7692 -3.2830 0.6601 30 9 0.6056 -2.5495 0.6584 31 1 -0.3633 -0.0004 -1.0276 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3634 0.8902 0.5134 34 1 2.0056 2.1261 0.0004 35 1 6.1171 -0.2079 0.0022 36 1 7.1001 1.3730 -2.1675 37 1 7.8716 2.8967 -1.6254 38 1 11.1577 1.7522 -0.7864 39 1 9.9804 3.0954 -0.9285 40 1 9.2483 2.6800 1.2798 41 1 10.4287 1.3385 1.4290 42 1 10.2097 -1.3163 -3.8219 43 1 1.7219 -2.8184 -1.0279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097147545.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:43 Heat of formation + Delta-G solvation = 3.473437 kcal Electronic energy + Delta-G solvation = -30201.918741 eV Core-core repulsion = 25728.646148 eV Total energy + Delta-G solvation = -4473.272593 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.84426 -47.92031 -42.82602 -39.58431 -38.11575 -33.82918 -33.13475 -32.86693 -32.40911 -29.04889 -28.78366 -27.99869 -27.59069 -26.31927 -24.20621 -23.40700 -21.51029 -21.10532 -19.77610 -19.54250 -18.70714 -18.66210 -18.10637 -17.70449 -16.99069 -16.80015 -15.90323 -15.69542 -14.94509 -14.78259 -14.70369 -14.42123 -14.25950 -14.08967 -13.82624 -13.79236 -13.42720 -13.36214 -13.22139 -12.88200 -12.63259 -12.13163 -11.99243 -11.81116 -11.19896 -11.08796 -10.99931 -10.90678 -10.88559 -10.48318 -10.35036 -10.05724 -9.95493 -9.79909 -9.56420 -9.27626 -9.17298 -9.15469 -8.94523 -8.42063 -6.91812 -5.71863 -3.10666 1.30674 1.54594 1.93812 3.01977 3.37855 3.43694 3.45776 3.46401 3.59457 3.64247 3.98057 4.22597 4.43306 4.63944 4.75851 5.14782 5.16720 5.29024 5.37997 5.41449 5.48059 5.65266 5.70661 5.72040 5.89303 6.07219 6.09375 6.17522 6.21393 6.29916 6.31787 6.44444 6.52268 6.62500 6.76501 6.85301 6.97601 7.12899 7.34753 7.50314 7.55828 7.81385 8.06201 8.19872 8.58813 9.10286 9.73308 10.54198 11.37236 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.003743 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.183780 B = 7479.009585 C = 9348.357018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.022 3.978 3 C -0.171 4.171 4 C 0.016 3.984 5 C 0.597 3.403 6 O -0.542 6.542 7 N -0.688 5.688 8 C 0.126 3.874 9 H 0.082 0.918 10 C -0.144 4.144 11 C 0.153 3.847 12 H 0.153 0.847 13 C -0.137 4.137 14 C -0.129 4.129 15 C 0.125 3.875 16 H 0.087 0.913 17 N -0.590 5.590 18 C -0.211 4.211 19 H 0.079 0.921 20 C -0.010 4.010 21 N -0.920 5.920 22 Si 0.914 3.086 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 N -0.242 5.242 27 N -0.351 5.351 28 C 0.505 3.495 29 F -0.164 7.164 30 F -0.174 7.174 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.168 0.832 35 H 0.410 0.590 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.253 0.747 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.049 0.892 5.151 18.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.099 4.099 3 C -0.198 4.198 4 C -0.148 4.148 5 C 0.380 3.620 6 O -0.418 6.418 7 N -0.337 5.337 8 C 0.020 3.980 9 H 0.100 0.900 10 C -0.184 4.184 11 C 0.046 3.954 12 H 0.169 0.831 13 C -0.177 4.177 14 C -0.169 4.169 15 C 0.017 3.983 16 H 0.105 0.895 17 N -0.310 5.310 18 C -0.339 4.339 19 H 0.097 0.903 20 C -0.206 4.206 21 N -0.568 5.568 22 Si 0.745 3.255 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 N -0.074 5.074 27 N -0.149 5.149 28 C 0.372 3.628 29 F -0.145 7.145 30 F -0.156 7.156 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.186 0.814 35 H 0.246 0.754 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -17.381 0.301 5.013 18.092 hybrid contribution -0.383 -0.827 0.004 0.911 sum -17.764 -0.526 5.018 18.466 Atomic orbital electron populations 1.20701 0.86074 1.05265 1.03811 1.21447 0.95644 0.85833 1.06957 1.21628 0.90345 0.99629 1.08214 1.22327 0.95846 0.89249 1.07377 1.16837 0.81721 0.86331 0.77159 1.90759 1.86737 1.12689 1.51640 1.45926 1.04813 1.11377 1.71537 1.22747 0.82901 0.94124 0.98214 0.89976 1.23482 1.00856 0.99005 0.95063 1.23719 0.90021 0.83796 0.97833 0.83057 1.23663 1.00418 0.98305 0.95271 1.23473 0.98421 0.97711 0.97253 1.23146 0.91723 0.91875 0.91589 0.89487 1.46515 1.74763 1.01617 1.08135 1.19060 1.36668 0.80364 0.97790 0.90325 1.24684 1.02033 0.97751 0.96124 1.69473 1.51209 1.31815 1.04290 0.86002 0.77381 0.84528 0.77596 1.20572 1.21909 1.21853 1.73700 0.99707 1.15413 1.18563 1.46631 1.04853 1.06828 1.56626 1.21468 0.72230 0.74899 0.94202 1.93180 1.66020 1.71657 1.83633 1.93040 1.43067 1.95049 1.84413 0.90125 0.89524 0.89320 0.81404 0.75435 0.92228 0.92665 0.92615 0.93122 0.92863 0.92306 0.93661 0.82094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.65 10.00 36.00 0.36 -0.29 16 2 C 0.02 0.24 6.81 -82.21 -0.56 -0.32 16 3 C -0.17 -2.25 10.73 -39.36 -0.42 -2.67 16 4 C 0.02 0.26 7.13 -82.77 -0.59 -0.33 16 5 C 0.60 11.09 7.82 -12.39 -0.10 10.99 16 6 O -0.54 -11.12 16.57 5.31 0.09 -11.03 16 7 N -0.69 -13.02 5.08 -52.38 -0.27 -13.29 16 8 C 0.13 2.45 2.80 -65.43 -0.18 2.27 16 9 H 0.08 1.57 7.19 -51.93 -0.37 1.19 16 10 C -0.14 -3.00 6.22 -24.23 -0.15 -3.15 16 11 C 0.15 3.52 4.67 -62.80 -0.29 3.23 16 12 H 0.15 3.99 5.52 -51.93 -0.29 3.70 16 13 C -0.14 -2.73 6.62 -22.17 -0.15 -2.87 16 14 C -0.13 -2.36 6.64 -22.16 -0.15 -2.51 16 15 C 0.13 2.51 5.01 -62.80 -0.31 2.20 16 16 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 17 N -0.59 -14.22 3.00 -145.82 -0.44 -14.66 16 18 C -0.21 -5.61 10.59 -15.06 -0.16 -5.77 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 21 N -0.92 -25.98 10.47 55.49 0.58 -25.40 16 22 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 N -0.24 -3.76 11.42 33.42 0.38 -3.37 16 27 N -0.35 -4.24 3.68 -62.36 -0.23 -4.47 16 28 C 0.50 4.32 6.49 59.85 0.39 4.71 16 29 F -0.16 -1.86 17.26 2.25 0.04 -1.82 16 30 F -0.17 -1.32 14.35 2.25 0.03 -1.29 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.52 5.49 -51.93 -0.29 0.23 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.17 1.95 8.06 -52.48 -0.42 1.52 16 35 H 0.41 7.96 8.38 -40.82 -0.34 7.62 16 36 H 0.06 1.35 7.98 -51.93 -0.41 0.94 16 37 H 0.05 1.06 7.81 -51.93 -0.41 0.66 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.05 0.90 7.81 -51.93 -0.41 0.49 16 40 H 0.05 0.86 7.79 -51.93 -0.40 0.45 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.16 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 360.75 15.07 5.44 5.44 Total: -1.00 -32.17 360.75 -7.23 -39.40 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -5.42 Total: 8.69 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -2.41 Total: 5.10 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.03 Total: -61.19 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.07 Total: -3.11 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.17 -7.23 -39.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097147545.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.873 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds