Wall clock time and date at job start Sat Apr 11 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34233 * 126.28007 * 2 1 4 4 H 0.97000 * 125.74163 * 0.02940 * 3 2 1 5 5 N 1.39932 * 108.52369 * 180.02562 * 3 2 1 6 6 C 1.30531 * 108.89236 * 359.75788 * 5 3 2 7 7 Cl 1.73606 * 126.00514 * 180.26106 * 6 5 3 8 8 C 1.38065 * 126.28139 * 180.02562 * 2 1 3 9 9 C 1.47388 * 126.42275 * 359.93597 * 8 2 1 10 10 O 1.21605 * 119.99990 * 90.00541 * 9 8 2 11 11 N 1.34781 * 119.99680 * 270.00277 * 9 8 2 12 12 C 1.47486 * 127.03579 * 0.02562 * 11 9 8 13 13 C 1.54003 * 107.08454 * 154.29172 * 12 11 9 14 14 H 1.08993 * 110.32784 * 120.19822 * 13 12 11 15 15 C 1.53001 * 110.32182 * 242.31216 * 13 12 11 16 16 C 1.54620 * 105.03961 * 1.30302 * 13 12 11 17 17 H 1.09004 * 110.73930 * 263.50537 * 16 13 12 18 18 C 1.53008 * 110.73441 * 140.19184 * 16 13 12 19 19 C 1.53002 * 109.46856 * 174.99882 * 18 16 13 20 20 N 1.46503 * 109.46721 * 179.97438 * 19 18 16 21 21 C 1.36940 * 119.99799 * 179.97438 * 20 19 18 22 22 H 1.07998 * 119.99996 * 0.02562 * 21 20 19 23 23 C 1.38810 * 119.99867 * 180.02562 * 21 20 19 24 24 N 1.31615 * 120.00046 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99810 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47087 * 60.00221 * 25 23 21 27 27 H 1.48500 * 109.47049 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47097 * 300.00145 * 25 23 21 29 29 C 1.48113 * 127.02791 * 179.70984 * 11 9 8 30 30 H 1.09004 * 109.47144 * 269.96948 * 1 2 3 31 31 H 1.09002 * 109.47201 * 29.96844 * 1 2 3 32 32 H 1.09004 * 109.47130 * 149.97131 * 1 2 3 33 33 H 1.08999 * 109.91088 * 273.65318 * 12 11 9 34 34 H 1.09002 * 109.90796 * 34.73635 * 12 11 9 35 35 H 1.09001 * 109.47456 * 58.55012 * 15 13 12 36 36 H 1.09006 * 109.46648 * 178.53961 * 15 13 12 37 37 H 1.08996 * 109.47142 * 298.54151 * 15 13 12 38 38 H 1.09001 * 109.46650 * 294.99733 * 18 16 13 39 39 H 1.09000 * 109.46877 * 54.99873 * 18 16 13 40 40 H 1.09001 * 109.47369 * 299.99411 * 19 18 16 41 41 H 1.09004 * 109.47054 * 59.99922 * 19 18 16 42 42 H 0.97000 * 120.00025 * 0.02562 * 20 19 18 43 43 H 0.97003 * 120.00111 * 179.97438 * 24 23 21 44 44 H 1.08997 * 110.66402 * 337.99428 * 29 11 9 45 45 H 1.08998 * 110.66769 * 101.11840 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0047 0.0004 5 7 3.6339 0.6554 -0.0006 6 6 3.6598 -0.6497 0.0043 7 17 5.0842 -1.6422 0.0121 8 6 2.3240 -1.1130 -0.0005 9 6 1.8858 -2.5202 0.0002 10 8 1.7042 -3.1010 -1.0526 11 7 1.6864 -3.1633 1.1678 12 6 1.8582 -2.6134 2.5255 13 6 0.9388 -3.4210 3.4604 14 1 1.5251 -3.9094 4.2387 15 6 -0.1174 -2.5078 4.0860 16 6 0.2687 -4.4765 2.5506 17 1 -0.7147 -4.1371 2.2252 18 6 0.1683 -5.8244 3.2676 19 6 -0.6081 -6.8107 2.3928 20 7 -0.7037 -8.1015 3.0792 21 6 -1.3598 -9.1462 2.4846 22 1 -1.8064 -9.0186 1.5095 23 6 -1.4509 -10.3690 3.1350 24 7 -0.9071 -10.5244 4.3235 25 14 -2.3452 -11.7942 2.3236 26 1 -1.6863 -12.1222 1.0338 27 1 -2.3018 -12.9792 3.2176 28 1 -3.7590 -11.4141 2.0747 29 6 1.2438 -4.5650 1.3498 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8903 -0.5133 32 1 -0.3633 -0.8898 -0.5143 33 1 2.8959 -2.7212 2.8411 34 1 1.5738 -1.5612 2.5384 35 1 -0.7032 -2.0361 3.2970 36 1 -0.7757 -3.0975 4.7240 37 1 0.3741 -1.7393 4.6825 38 1 1.1698 -6.2130 3.4525 39 1 -0.3515 -5.6932 4.2167 40 1 -1.6096 -6.4221 2.2080 41 1 -0.0883 -6.9418 1.4438 42 1 -0.3030 -8.2160 3.9550 43 1 -0.9710 -11.3788 4.7782 44 1 0.7266 -4.9237 0.4599 45 1 2.0909 -5.2079 1.5890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104274666.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:57 Heat of formation + Delta-G solvation = 35.694548 kcal Electronic energy + Delta-G solvation = -27283.890633 eV Core-core repulsion = 23363.811933 eV Total energy + Delta-G solvation = -3920.078700 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.97836 -39.97679 -37.93152 -37.18328 -35.10753 -33.27902 -33.13758 -32.04953 -31.70299 -30.14126 -28.21392 -26.93124 -26.54121 -24.41499 -22.81317 -22.39313 -21.97954 -20.68808 -20.05151 -19.30702 -18.07714 -17.07409 -16.89229 -16.15625 -15.68097 -15.62784 -15.34574 -14.74407 -14.62780 -14.38504 -13.91724 -13.64616 -13.52109 -13.35046 -13.24547 -13.07022 -13.03700 -12.84626 -12.36715 -12.34998 -12.20583 -12.07444 -11.70234 -11.37380 -11.20111 -11.13991 -10.98258 -10.78994 -10.58701 -10.43611 -10.27815 -10.10801 -9.95750 -9.89764 -9.63213 -9.18764 -8.82641 -8.75083 -6.88072 -5.72967 -3.01251 1.05822 1.06488 1.74817 2.36946 2.43013 2.97796 3.47342 3.51360 3.52612 4.00274 4.26381 4.36846 4.42742 4.58359 4.61511 4.70313 4.83564 4.89365 5.07238 5.21252 5.25727 5.29520 5.34621 5.37474 5.44403 5.53783 5.56921 5.62684 5.76473 5.79430 5.90536 5.93561 6.00617 6.08691 6.19327 6.30765 6.40371 6.46737 6.48299 6.80466 6.88458 6.92279 7.42950 7.73721 8.04543 8.46491 9.57328 10.15965 10.50296 11.50064 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018143 B = 0.002310 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.883526 B =12116.754280 C =12444.135831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.144 3.856 3 N -0.447 5.447 4 H 0.449 0.551 5 N -0.276 5.276 6 C 0.160 3.840 7 Cl 0.023 6.977 8 C -0.262 4.262 9 C 0.614 3.386 10 O -0.527 6.527 11 N -0.610 5.610 12 C 0.108 3.892 13 C -0.103 4.103 14 H 0.089 0.911 15 C -0.141 4.141 16 C -0.089 4.089 17 H 0.084 0.916 18 C -0.115 4.115 19 C 0.152 3.848 20 N -0.734 5.734 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.108 3.892 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.017 0.983 41 H 0.019 0.981 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.089 0.911 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.361 28.785 -3.784 29.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.011 3.989 3 N -0.157 5.157 4 H 0.295 0.705 5 N -0.101 5.101 6 C -0.033 4.033 7 Cl 0.051 6.949 8 C -0.277 4.277 9 C 0.400 3.600 10 O -0.402 6.402 11 N -0.343 5.343 12 C -0.015 4.015 13 C -0.122 4.122 14 H 0.107 0.893 15 C -0.199 4.199 16 C -0.109 4.109 17 H 0.102 0.898 18 C -0.153 4.153 19 C 0.024 3.976 20 N -0.378 5.378 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.211 4.211 24 N -0.584 5.584 25 Si 0.738 3.262 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.013 4.013 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.035 0.965 41 H 0.037 0.963 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.107 0.893 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.051 29.355 -4.574 30.535 hybrid contribution -0.649 -1.095 -0.049 1.274 sum 6.403 28.260 -4.622 29.343 Atomic orbital electron populations 1.20660 0.85537 1.05278 1.04549 1.21414 0.94887 0.85898 0.96658 1.45840 1.03014 1.08655 1.58184 0.70514 1.77169 0.96500 1.10661 1.25775 1.22568 0.88848 0.90487 1.01379 1.98435 1.35112 1.64695 1.96693 1.19726 0.91139 0.94340 1.22536 1.16654 0.76923 0.84041 0.82387 1.90831 1.51277 1.67660 1.30481 1.48722 1.66548 1.13836 1.05170 1.22177 0.99750 0.98006 0.81589 1.22167 0.96696 0.96074 0.97305 0.89271 1.21828 0.98403 0.99044 1.00579 1.22341 0.98692 0.95533 0.94369 0.89769 1.21728 1.01449 0.92916 0.99210 1.20680 0.96230 0.86329 0.94345 1.42360 1.66981 1.07278 1.21200 1.19201 1.26978 0.90129 1.00640 0.91255 1.24735 1.01532 0.97919 0.96906 1.69648 1.49854 1.24631 1.14283 0.86267 0.79511 0.82127 0.78296 1.21240 1.21710 1.21298 1.22696 0.97829 0.81456 0.99331 0.88870 0.89821 0.88587 0.91516 0.91198 0.92725 0.91782 0.92753 0.91577 0.91411 0.96516 0.96281 0.78347 0.93513 0.89285 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 10.25 36.00 0.37 -0.11 16 2 C 0.14 1.12 7.29 -81.61 -0.60 0.52 16 3 N -0.45 -3.02 7.28 33.86 0.25 -2.78 16 4 H 0.45 1.26 8.96 -182.73 -1.64 -0.38 16 5 N -0.28 -2.82 12.64 33.18 0.42 -2.40 16 6 C 0.16 1.82 7.89 -16.91 -0.13 1.69 16 7 Cl 0.02 0.25 29.19 -51.86 -1.51 -1.26 16 8 C -0.26 -2.92 4.87 -105.04 -0.51 -3.43 16 9 C 0.61 8.23 7.24 -12.53 -0.09 8.14 16 10 O -0.53 -9.12 17.31 5.27 0.09 -9.03 16 11 N -0.61 -7.19 3.29 -171.05 -0.56 -7.75 16 12 C 0.11 0.99 6.41 -2.98 -0.02 0.97 16 13 C -0.10 -0.94 3.17 -89.24 -0.28 -1.23 16 14 H 0.09 0.81 7.85 -51.93 -0.41 0.40 16 15 C -0.14 -1.09 8.90 37.16 0.33 -0.76 16 16 C -0.09 -1.04 2.59 -88.74 -0.23 -1.27 16 17 H 0.08 0.99 7.86 -51.93 -0.41 0.58 16 18 C -0.11 -1.70 4.70 -26.73 -0.13 -1.82 16 19 C 0.15 2.98 6.15 -4.04 -0.02 2.96 16 20 N -0.73 -18.69 5.60 -59.90 -0.34 -19.03 16 21 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 22 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 23 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 24 N -0.94 -28.50 13.06 55.49 0.72 -27.77 16 25 Si 0.91 22.68 29.55 -169.99 -5.02 17.65 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 C 0.11 1.39 5.94 -2.13 -0.01 1.37 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.10 0.62 7.96 -51.93 -0.41 0.21 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.56 7.25 -51.93 -0.38 0.18 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.99 7.99 -51.93 -0.41 0.58 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.02 0.39 7.67 -51.93 -0.40 -0.01 16 42 H 0.38 10.17 7.67 -40.82 -0.31 9.86 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.09 1.28 7.82 -51.93 -0.41 0.88 16 45 H 0.08 1.02 7.94 -51.93 -0.41 0.60 16 LS Contribution 390.40 15.07 5.88 5.88 Total: -1.00 -35.39 390.40 -9.76 -45.15 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -8.12 Total: 1.75 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -1.57 Total: -0.42 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.49 Total: -59.73 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -1.51 Total: -1.26 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.39 -9.76 -45.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104274666.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.840 kcal (2) G-P(sol) polarization free energy of solvation -35.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds