Wall clock time and date at job start Sat Apr 11 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34233 * 126.28007 * 2 1 4 4 H 0.97000 * 125.74163 * 0.02940 * 3 2 1 5 5 N 1.39932 * 108.52369 * 180.02562 * 3 2 1 6 6 C 1.30531 * 108.89236 * 359.75788 * 5 3 2 7 7 Cl 1.73606 * 126.00514 * 180.26106 * 6 5 3 8 8 C 1.38065 * 126.28139 * 180.02562 * 2 1 3 9 9 C 1.47388 * 126.42275 * 359.93597 * 8 2 1 10 10 O 1.21605 * 119.99990 * 90.00541 * 9 8 2 11 11 N 1.34781 * 119.99680 * 270.00277 * 9 8 2 12 12 C 1.47486 * 127.03579 * 0.02562 * 11 9 8 13 13 C 1.54003 * 107.08454 * 154.29172 * 12 11 9 14 14 H 1.08993 * 110.32784 * 120.19822 * 13 12 11 15 15 C 1.53001 * 110.32182 * 242.31216 * 13 12 11 16 16 C 1.54620 * 105.03961 * 1.30302 * 13 12 11 17 17 H 1.09004 * 110.73930 * 263.50537 * 16 13 12 18 18 C 1.53008 * 110.73441 * 140.19184 * 16 13 12 19 19 C 1.53002 * 109.46856 * 174.99882 * 18 16 13 20 20 N 1.46503 * 109.46721 * 179.97438 * 19 18 16 21 21 C 1.36940 * 119.99799 * 179.97438 * 20 19 18 22 22 H 1.07998 * 119.99996 * 0.02562 * 21 20 19 23 23 C 1.38810 * 119.99867 * 180.02562 * 21 20 19 24 24 N 1.31615 * 120.00046 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99810 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47087 * 60.00221 * 25 23 21 27 27 H 1.48500 * 109.47049 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47097 * 300.00145 * 25 23 21 29 29 C 1.48113 * 127.02791 * 179.70984 * 11 9 8 30 30 H 1.09004 * 109.47144 * 269.96948 * 1 2 3 31 31 H 1.09002 * 109.47201 * 29.96844 * 1 2 3 32 32 H 1.09004 * 109.47130 * 149.97131 * 1 2 3 33 33 H 1.08999 * 109.91088 * 273.65318 * 12 11 9 34 34 H 1.09002 * 109.90796 * 34.73635 * 12 11 9 35 35 H 1.09001 * 109.47456 * 58.55012 * 15 13 12 36 36 H 1.09006 * 109.46648 * 178.53961 * 15 13 12 37 37 H 1.08996 * 109.47142 * 298.54151 * 15 13 12 38 38 H 1.09001 * 109.46650 * 294.99733 * 18 16 13 39 39 H 1.09000 * 109.46877 * 54.99873 * 18 16 13 40 40 H 1.09001 * 109.47369 * 299.99411 * 19 18 16 41 41 H 1.09004 * 109.47054 * 59.99922 * 19 18 16 42 42 H 0.97000 * 120.00025 * 0.02562 * 20 19 18 43 43 H 0.97003 * 120.00111 * 179.97438 * 24 23 21 44 44 H 1.08997 * 110.66402 * 337.99428 * 29 11 9 45 45 H 1.08998 * 110.66769 * 101.11840 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0047 0.0004 5 7 3.6339 0.6554 -0.0006 6 6 3.6598 -0.6497 0.0043 7 17 5.0842 -1.6422 0.0121 8 6 2.3240 -1.1130 -0.0005 9 6 1.8858 -2.5202 0.0002 10 8 1.7042 -3.1010 -1.0526 11 7 1.6864 -3.1633 1.1678 12 6 1.8582 -2.6134 2.5255 13 6 0.9388 -3.4210 3.4604 14 1 1.5251 -3.9094 4.2387 15 6 -0.1174 -2.5078 4.0860 16 6 0.2687 -4.4765 2.5506 17 1 -0.7147 -4.1371 2.2252 18 6 0.1683 -5.8244 3.2676 19 6 -0.6081 -6.8107 2.3928 20 7 -0.7037 -8.1015 3.0792 21 6 -1.3598 -9.1462 2.4846 22 1 -1.8064 -9.0186 1.5095 23 6 -1.4509 -10.3690 3.1350 24 7 -0.9071 -10.5244 4.3235 25 14 -2.3452 -11.7942 2.3236 26 1 -1.6863 -12.1222 1.0338 27 1 -2.3018 -12.9792 3.2176 28 1 -3.7590 -11.4141 2.0747 29 6 1.2438 -4.5650 1.3498 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8903 -0.5133 32 1 -0.3633 -0.8898 -0.5143 33 1 2.8959 -2.7212 2.8411 34 1 1.5738 -1.5612 2.5384 35 1 -0.7032 -2.0361 3.2970 36 1 -0.7757 -3.0975 4.7240 37 1 0.3741 -1.7393 4.6825 38 1 1.1698 -6.2130 3.4525 39 1 -0.3515 -5.6932 4.2167 40 1 -1.6096 -6.4221 2.2080 41 1 -0.0883 -6.9418 1.4438 42 1 -0.3030 -8.2160 3.9550 43 1 -0.9710 -11.3788 4.7782 44 1 0.7266 -4.9237 0.4599 45 1 2.0909 -5.2079 1.5890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104274666.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:57 Heat of formation + Delta-G solvation = 11.570678 kcal Electronic energy + Delta-G solvation = -27284.936723 eV Core-core repulsion = 23363.811933 eV Total energy + Delta-G solvation = -3921.124790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.69656 -40.93120 -38.99280 -37.99418 -36.83287 -34.59489 -33.77519 -33.41971 -32.47210 -31.67530 -29.04352 -28.11519 -27.28037 -25.96736 -24.26967 -23.11214 -23.03391 -21.91100 -20.99423 -20.13676 -19.15963 -18.79814 -17.77294 -17.15321 -16.65736 -16.43035 -16.34720 -16.24309 -15.83882 -15.36834 -15.25217 -15.05882 -14.61331 -14.33441 -14.22803 -14.09867 -13.89642 -13.48788 -13.36276 -13.16325 -13.04916 -13.03873 -12.84768 -12.83868 -12.64575 -12.38081 -12.25675 -12.15124 -11.95177 -11.86301 -11.55158 -11.49028 -11.25267 -11.11826 -10.89583 -10.59836 -9.93079 -9.73691 -8.98130 -7.94407 -5.22851 0.31688 0.41247 0.94400 1.40338 1.47606 1.50767 1.56854 1.74993 2.11859 2.57060 3.32831 3.39075 3.50330 3.58787 3.71876 3.79064 3.89034 4.04752 4.12900 4.25547 4.35069 4.50887 4.53508 4.59742 4.60570 4.64955 4.70305 4.73046 4.74587 4.84659 4.92206 4.96064 5.03806 5.08303 5.15066 5.22818 5.33835 5.41362 5.45572 5.51126 5.59259 5.94053 6.20892 6.28815 6.48389 7.04603 7.34795 8.11931 8.35013 9.28996 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018143 B = 0.002310 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.883526 B =12116.754280 C =12444.135831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.168 3.832 3 N -0.425 5.425 4 H 0.467 0.533 5 N -0.292 5.292 6 C 0.148 3.852 7 Cl 0.012 6.988 8 C -0.294 4.294 9 C 0.616 3.384 10 O -0.578 6.578 11 N -0.605 5.605 12 C 0.109 3.891 13 C -0.095 4.095 14 H 0.093 0.907 15 C -0.138 4.138 16 C -0.078 4.078 17 H 0.087 0.913 18 C -0.100 4.100 19 C 0.149 3.851 20 N -0.747 5.747 21 C -0.248 4.248 22 H 0.072 0.928 23 C -0.075 4.075 24 N -0.969 5.969 25 Si 0.972 3.028 26 H -0.280 1.280 27 H -0.293 1.293 28 H -0.277 1.277 29 C 0.106 3.894 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.018 0.982 41 H 0.014 0.986 42 H 0.375 0.625 43 H 0.252 0.748 44 H 0.066 0.934 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.362 31.289 -3.373 31.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.034 3.966 3 N -0.137 5.137 4 H 0.318 0.682 5 N -0.117 5.117 6 C -0.044 4.044 7 Cl 0.040 6.960 8 C -0.310 4.310 9 C 0.404 3.596 10 O -0.457 6.457 11 N -0.337 5.337 12 C -0.013 4.013 13 C -0.114 4.114 14 H 0.112 0.888 15 C -0.195 4.195 16 C -0.097 4.097 17 H 0.106 0.894 18 C -0.138 4.138 19 C 0.023 3.977 20 N -0.390 5.390 21 C -0.380 4.380 22 H 0.090 0.910 23 C -0.267 4.267 24 N -0.620 5.620 25 Si 0.801 3.199 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.203 1.203 29 C -0.016 4.016 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.036 0.964 41 H 0.032 0.968 42 H 0.207 0.793 43 H 0.061 0.939 44 H 0.084 0.916 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.056 31.934 -4.156 32.768 hybrid contribution -0.356 -1.784 -0.206 1.830 sum 5.700 30.151 -4.362 30.993 Atomic orbital electron populations 1.20838 0.83026 1.05965 1.06178 1.21770 0.96030 0.84936 0.93890 1.45843 1.01781 1.09529 1.56521 0.68185 1.77109 0.98351 1.10060 1.26221 1.22612 0.88670 0.90872 1.02272 1.98423 1.35681 1.65099 1.96778 1.19621 0.91734 0.93828 1.25786 1.16970 0.75943 0.84824 0.81858 1.90794 1.53646 1.69017 1.32282 1.48758 1.65585 1.13283 1.06063 1.22332 1.00165 0.98982 0.79812 1.22129 0.96964 0.95460 0.96801 0.88821 1.21818 0.97868 0.99025 1.00834 1.22183 0.98829 0.94610 0.94115 0.89428 1.21561 1.00363 0.93212 0.98635 1.20857 0.96913 0.85224 0.94690 1.42591 1.66594 1.08727 1.21103 1.19599 1.26511 0.91149 1.00741 0.90998 1.25558 1.02955 1.00548 0.97677 1.69798 1.51488 1.24990 1.15675 0.85231 0.78645 0.78708 0.77313 1.20601 1.21905 1.20271 1.22604 0.97805 0.82317 0.98917 0.86585 0.86623 0.90385 0.91010 0.89139 0.91952 0.92411 0.90841 0.91844 0.90982 0.96396 0.96806 0.79339 0.93931 0.91550 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.62 10.25 71.24 0.73 0.11 16 2 C 0.17 2.18 7.29 42.15 0.31 2.49 16 3 N -0.42 -4.53 7.28 -46.80 -0.34 -4.87 16 4 H 0.47 0.94 8.96 -213.43 -1.91 -0.97 16 5 N -0.29 -5.50 12.64 -48.95 -0.62 -6.12 16 6 C 0.15 3.25 7.89 85.66 0.68 3.93 16 7 Cl 0.01 0.28 29.19 -2.72 -0.08 0.20 16 8 C -0.29 -6.25 4.87 -20.13 -0.10 -6.34 16 9 C 0.62 16.56 7.24 86.65 0.63 17.19 16 10 O -0.58 -20.78 17.31 -4.05 -0.07 -20.85 16 11 N -0.61 -13.96 3.29 -813.32 -2.68 -16.64 16 12 C 0.11 1.77 6.41 86.53 0.55 2.33 16 13 C -0.09 -1.51 3.17 -9.90 -0.03 -1.54 16 14 H 0.09 1.47 7.85 -2.39 -0.02 1.45 16 15 C -0.14 -1.67 8.90 71.98 0.64 -1.03 16 16 C -0.08 -1.72 2.59 -9.58 -0.02 -1.75 16 17 H 0.09 1.93 7.86 -2.38 -0.02 1.91 16 18 C -0.10 -2.89 4.70 30.60 0.14 -2.75 16 19 C 0.15 5.92 6.15 86.38 0.53 6.45 16 20 N -0.75 -38.54 5.60 -343.44 -1.92 -40.46 16 21 C -0.25 -14.20 9.99 84.03 0.84 -13.36 16 22 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 23 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 24 N -0.97 -59.77 13.06 21.65 0.28 -59.49 16 25 Si 0.97 46.80 29.55 68.60 2.03 48.83 16 26 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 27 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 28 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 29 C 0.11 2.74 5.94 86.73 0.52 3.26 16 30 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.08 0.86 7.96 -2.38 -0.02 0.84 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 1.13 7.25 -2.39 -0.02 1.12 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.06 1.89 7.99 -2.39 -0.02 1.87 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.01 0.57 7.67 -2.39 -0.02 0.55 16 42 H 0.37 20.25 7.67 -92.71 -0.71 19.54 16 43 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 44 H 0.07 2.01 7.82 -2.39 -0.02 2.00 16 45 H 0.07 1.94 7.94 -2.39 -0.02 1.93 16 Total: -1.00 -78.42 390.40 0.88 -77.54 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -1.60 Total: 16.80 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 5.88 Total: 5.06 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -5.28 Total: -127.58 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.07 Total: -20.85 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -0.08 Total: 0.20 kcal Total: -78.42 0.88 -77.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104274666.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.110 kcal (2) G-P(sol) polarization free energy of solvation -78.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds