Wall clock time and date at job start Sat Apr 11 2020 06:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.47362 * 2 1 4 4 N 1.34228 * 126.28216 * 265.18278 * 3 2 1 5 5 H 0.96999 * 125.73792 * 359.97438 * 4 3 2 6 6 N 1.39926 * 108.52514 * 180.24014 * 4 3 2 7 7 C 1.30534 * 108.89198 * 359.75077 * 6 4 3 8 8 Cl 1.73604 * 126.00282 * 179.97438 * 7 6 4 9 9 C 1.38066 * 126.27728 * 84.99887 * 3 2 1 10 10 C 1.47381 * 126.42811 * 0.02718 * 9 3 2 11 11 O 1.21609 * 120.00156 * 269.71318 * 10 9 3 12 12 N 1.34777 * 119.99980 * 89.70905 * 10 9 3 13 13 C 1.47019 * 125.65068 * 180.02562 * 12 10 9 14 14 C 1.54321 * 107.27531 * 178.90607 * 13 12 10 15 15 H 1.09002 * 110.72109 * 96.17040 * 14 13 12 16 16 C 1.53003 * 110.72129 * 219.26706 * 14 13 12 17 17 N 1.46501 * 109.47017 * 291.15384 * 16 14 13 18 18 C 1.36932 * 119.99612 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00694 * 359.97438 * 18 17 16 20 20 C 1.38823 * 119.99634 * 180.02562 * 18 17 16 21 21 N 1.31611 * 119.99760 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99709 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47620 * 60.00075 * 22 20 18 24 24 H 1.48503 * 109.46890 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47301 * 299.99547 * 22 20 18 26 26 C 1.55157 * 103.10033 * 337.71659 * 14 13 12 27 27 H 1.09001 * 111.00741 * 277.51995 * 26 14 13 28 28 C 1.53000 * 111.00230 * 153.66249 * 26 14 13 29 29 C 1.47431 * 125.64789 * 359.96265 * 12 10 9 30 30 H 1.08995 * 109.46981 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46629 * 300.00100 * 1 2 3 32 32 H 1.08993 * 109.47112 * 59.99770 * 1 2 3 33 33 H 1.08999 * 109.47041 * 240.00106 * 2 1 3 34 34 H 1.09003 * 109.46979 * 120.00293 * 2 1 3 35 35 H 1.09001 * 109.88251 * 59.48348 * 13 12 10 36 36 H 1.09004 * 109.88394 * 298.32261 * 13 12 10 37 37 H 1.09003 * 109.46901 * 51.15665 * 16 14 13 38 38 H 1.09004 * 109.47093 * 171.15492 * 16 14 13 39 39 H 0.97002 * 120.00115 * 0.02562 * 17 16 14 40 40 H 0.97005 * 119.99816 * 180.02562 * 21 20 18 41 41 H 1.08998 * 109.47366 * 60.00704 * 28 26 14 42 42 H 1.09006 * 109.46883 * 179.97438 * 28 26 14 43 43 H 1.08999 * 109.47315 * 299.99847 * 28 26 14 44 44 H 1.08999 * 110.36190 * 322.99854 * 29 12 10 45 45 H 1.08998 * 110.36491 * 85.21533 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3829 2.1394 -1.0782 5 1 2.3564 1.8312 -1.9975 6 7 2.7986 3.4059 -0.6525 7 6 2.7019 3.4675 0.6478 8 17 3.1035 4.8363 1.6372 9 6 2.2133 2.2234 1.1088 10 6 1.9521 1.8510 2.5107 11 8 0.8566 2.0515 2.9991 12 7 2.9273 1.2881 3.2513 13 6 2.8037 0.8693 4.6552 14 6 4.1576 0.2571 5.0717 15 1 4.7769 0.9983 5.5769 16 6 3.9463 -0.9677 5.9640 17 7 3.4063 -0.5421 7.2576 18 6 3.1342 -1.4720 8.2253 19 1 3.3173 -2.5192 8.0348 20 6 2.6220 -1.0688 9.4509 21 7 2.3975 0.2072 9.6826 22 14 2.2516 -2.3372 10.7712 23 1 3.4982 -3.0626 11.1246 24 1 1.7167 -1.6549 11.9769 25 1 1.2447 -3.3025 10.2618 26 6 4.7897 -0.1542 3.7157 27 1 4.4083 -1.1198 3.3837 28 6 6.3169 -0.1715 3.8054 29 6 4.2945 0.9892 2.7875 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0143 0.1238 4.7514 36 1 2.5790 1.7329 5.2813 37 1 3.2447 -1.6501 5.4841 38 1 4.8991 -1.4746 6.1170 39 1 3.2407 0.3983 7.4284 40 1 2.0399 0.4890 10.5392 41 1 6.6281 -0.8865 4.5670 42 1 6.7342 -0.4634 2.8416 43 1 6.6766 0.8224 4.0715 44 1 4.2785 0.6552 1.7501 45 1 4.9313 1.8676 2.8928 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106235031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:00 Heat of formation + Delta-G solvation = 35.283556 kcal Electronic energy + Delta-G solvation = -27790.025396 eV Core-core repulsion = 23869.928873 eV Total energy + Delta-G solvation = -3920.096522 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.91237 -39.75931 -37.68765 -37.08048 -34.63234 -34.52845 -32.87955 -31.74841 -31.34966 -30.01837 -28.87097 -26.40437 -25.61233 -24.42291 -23.27712 -22.24079 -21.98537 -20.93589 -19.87127 -19.12160 -18.02502 -17.13933 -16.57297 -16.18225 -15.64998 -15.40221 -15.39189 -14.72423 -14.56665 -14.29179 -13.99589 -13.71620 -13.59567 -13.18660 -13.14204 -12.86821 -12.68993 -12.45004 -12.29368 -12.17669 -12.03759 -11.94840 -11.71651 -11.58585 -11.37503 -11.06470 -10.98988 -10.84316 -10.61214 -10.43239 -10.35815 -10.01602 -9.90979 -9.79449 -9.63664 -9.06607 -8.84920 -8.49281 -6.90162 -5.73114 -3.02300 1.16599 1.17659 1.86898 2.49958 2.59280 3.17550 3.46456 3.50697 3.52040 4.03715 4.34953 4.44172 4.52569 4.60074 4.72651 4.78579 4.88422 4.98748 5.04526 5.17863 5.36292 5.40546 5.46656 5.51187 5.53108 5.54288 5.60273 5.63702 5.75340 5.83856 5.90548 6.03440 6.06776 6.17193 6.23727 6.38101 6.42268 6.46850 6.58393 6.72097 6.85509 6.91385 7.60210 7.71801 8.24338 8.45168 9.56412 10.13554 10.47919 11.49497 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014569 B = 0.002816 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.410570 B = 9940.176815 C =10105.834870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.068 4.068 3 C 0.144 3.856 4 N -0.447 5.447 5 H 0.448 0.552 6 N -0.277 5.277 7 C 0.160 3.840 8 Cl 0.023 6.977 9 C -0.256 4.256 10 C 0.607 3.393 11 O -0.524 6.524 12 N -0.606 5.606 13 C 0.117 3.883 14 C -0.100 4.100 15 H 0.086 0.914 16 C 0.165 3.835 17 N -0.732 5.732 18 C -0.242 4.242 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.098 4.098 27 H 0.086 0.914 28 C -0.139 4.139 29 C 0.107 3.893 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.020 0.980 38 H 0.024 0.976 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.179 1.934 -25.819 26.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 C 0.012 3.988 4 N -0.156 5.156 5 H 0.294 0.706 6 N -0.102 5.102 7 C -0.033 4.033 8 Cl 0.051 6.949 9 C -0.272 4.272 10 C 0.393 3.607 11 O -0.399 6.399 12 N -0.339 5.339 13 C -0.004 4.004 14 C -0.120 4.120 15 H 0.105 0.895 16 C 0.038 3.962 17 N -0.377 5.377 18 C -0.373 4.373 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.117 4.117 27 H 0.104 0.896 28 C -0.197 4.197 29 C -0.016 4.016 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.038 0.962 38 H 0.041 0.959 39 H 0.218 0.782 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.853 2.725 -26.425 26.843 hybrid contribution -0.375 -0.625 1.080 1.304 sum 3.477 2.099 -25.344 25.668 Atomic orbital electron populations 1.21781 0.92738 1.03065 1.03321 1.20416 0.97671 0.87771 1.04828 1.21446 0.96132 0.95197 0.86016 1.45814 1.51527 1.09311 1.08929 0.70631 1.77154 1.23320 0.98979 1.10758 1.22568 0.99870 0.90301 0.90567 1.98435 1.91914 1.39691 1.64890 1.19750 1.18355 0.94434 0.94648 1.16686 0.83264 0.77277 0.83508 1.90832 1.23069 1.53636 1.72411 1.48449 1.11843 1.60255 1.13393 1.22087 0.98487 1.00058 0.79817 1.22533 0.94991 0.99357 0.95069 0.89517 1.20629 0.96446 0.92588 0.86577 1.42353 1.77229 1.07470 1.10623 1.19152 1.35659 0.89508 0.92988 0.91275 1.24740 1.02032 0.96040 0.98026 1.69646 1.50759 1.13527 1.24038 0.86279 0.78003 0.80457 0.81487 1.21316 1.21708 1.21286 1.22429 0.96207 0.98097 0.94994 0.89576 1.21684 0.93662 1.02550 1.01766 1.22448 0.82923 0.98042 0.98170 0.91049 0.90932 0.92517 0.89612 0.88353 0.90456 0.90955 0.96193 0.95857 0.78190 0.93431 0.91532 0.92775 0.92357 0.91344 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.90 37.16 0.37 -0.77 16 2 C -0.07 -0.46 6.27 -27.88 -0.17 -0.64 16 3 C 0.14 1.34 6.55 -81.61 -0.53 0.81 16 4 N -0.45 -3.57 7.28 33.86 0.25 -3.32 16 5 H 0.45 1.80 8.96 -182.73 -1.64 0.16 16 6 N -0.28 -3.14 12.64 33.18 0.42 -2.72 16 7 C 0.16 2.03 7.89 -16.90 -0.13 1.89 16 8 Cl 0.02 0.29 29.19 -51.86 -1.51 -1.23 16 9 C -0.26 -3.26 4.77 -105.04 -0.50 -3.76 16 10 C 0.61 9.41 7.29 -12.54 -0.09 9.32 16 11 O -0.52 -10.23 17.43 5.27 0.09 -10.14 16 12 N -0.61 -8.65 3.33 -171.51 -0.57 -9.22 16 13 C 0.12 1.94 6.27 -3.07 -0.02 1.92 16 14 C -0.10 -1.52 2.44 -88.78 -0.22 -1.74 16 15 H 0.09 1.36 8.04 -51.93 -0.42 0.94 16 16 C 0.17 3.14 5.59 -4.04 -0.02 3.12 16 17 N -0.73 -18.18 5.48 -59.90 -0.33 -18.51 16 18 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 19 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 22 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 C -0.10 -1.10 3.10 -88.22 -0.27 -1.38 16 27 H 0.09 0.94 8.05 -51.93 -0.42 0.52 16 28 C -0.14 -1.35 9.32 37.16 0.35 -1.00 16 29 C 0.11 1.19 6.17 -2.27 -0.01 1.18 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.10 0.76 8.08 -51.93 -0.42 0.34 16 35 H 0.08 1.43 7.73 -51.93 -0.40 1.02 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.02 0.39 8.00 -51.93 -0.42 -0.03 16 38 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 39 H 0.38 10.11 7.60 -40.82 -0.31 9.80 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 44 H 0.07 0.65 7.69 -51.93 -0.40 0.25 16 45 H 0.07 0.75 8.00 -51.93 -0.42 0.33 16 LS Contribution 391.81 15.07 5.90 5.90 Total: -1.00 -34.44 391.81 -9.74 -44.18 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -8.18 Total: 3.56 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -1.51 Total: 1.64 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: 0.49 Total: -61.35 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -1.51 Total: -1.23 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.44 -9.74 -44.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106235031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.468 kcal (2) G-P(sol) polarization free energy of solvation -34.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds