Wall clock time and date at job start Sat Apr 11 2020 06:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.51272 * 2 1 4 4 N 1.46503 * 109.47277 * 59.99856 * 3 2 1 5 5 C 1.34769 * 120.00039 * 180.27659 * 4 3 2 6 6 O 1.21274 * 120.00484 * 359.72438 * 5 4 3 7 7 C 1.50709 * 119.99850 * 179.72304 * 5 4 3 8 8 C 1.53000 * 109.46935 * 180.02562 * 7 5 4 9 9 H 1.08997 * 110.53705 * 57.82915 * 8 7 5 10 10 N 1.47313 * 110.59557 * 294.99945 * 8 7 5 11 11 C 1.34533 * 106.61794 * 241.47551 * 10 8 7 12 12 O 1.21538 * 123.76812 * 180.02562 * 11 10 8 13 13 N 1.33787 * 112.45898 * 0.02562 * 11 10 8 14 14 C 1.34768 * 111.64375 * 0.02562 * 13 11 10 15 15 O 1.21238 * 127.15979 * 180.02562 * 14 13 11 16 16 C 1.53294 * 109.51691 * 239.89917 * 2 1 3 17 17 N 1.47169 * 108.37355 * 292.27789 * 16 2 1 18 18 C 1.36937 * 120.94433 * 129.48183 * 17 16 2 19 19 H 1.08004 * 120.00164 * 206.29010 * 18 17 16 20 20 C 1.38816 * 119.99908 * 26.29434 * 18 17 16 21 21 N 1.31615 * 119.99839 * 16.88798 * 20 18 17 22 22 Si 1.86792 * 119.99943 * 196.89082 * 20 18 17 23 23 H 1.48504 * 109.47450 * 89.99902 * 22 20 18 24 24 H 1.48498 * 109.47507 * 210.00091 * 22 20 18 25 25 H 1.48499 * 109.47383 * 330.00170 * 22 20 18 26 26 C 1.47152 * 118.07490 * 309.54570 * 17 16 2 27 27 C 1.53292 * 108.38562 * 50.50013 * 26 17 16 28 28 O 1.42957 * 109.22381 * 307.70129 * 27 26 17 29 29 H 1.08998 * 109.46713 * 60.00293 * 1 2 3 30 30 H 1.09006 * 109.46820 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47244 * 300.00016 * 1 2 3 32 32 H 1.09002 * 109.47128 * 299.99840 * 3 2 1 33 33 H 1.09002 * 109.47088 * 179.97438 * 3 2 1 34 34 H 0.97007 * 119.99692 * 0.02562 * 4 3 2 35 35 H 1.09001 * 109.46950 * 299.99905 * 7 5 4 36 36 H 1.08994 * 109.46800 * 60.00104 * 7 5 4 37 37 H 0.96999 * 126.69521 * 61.51561 * 10 8 7 38 38 H 0.96999 * 124.18483 * 179.97438 * 13 11 10 39 39 H 1.09005 * 109.68024 * 52.04932 * 16 2 1 40 40 H 1.08994 * 109.68533 * 172.60705 * 16 2 1 41 41 H 0.96999 * 119.99893 * 180.02562 * 21 20 18 42 42 H 1.09001 * 109.68061 * 290.77758 * 26 17 16 43 43 H 1.08996 * 109.68364 * 170.22666 * 26 17 16 44 44 H 1.09005 * 109.51213 * 187.77770 * 27 26 17 45 45 H 1.09000 * 109.50933 * 67.62404 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4422 0.0000 4 7 1.5532 2.1332 1.1962 5 6 1.8751 3.4248 1.4066 6 8 2.5728 4.0138 0.6084 7 6 1.3681 4.1374 2.6339 8 6 1.8740 5.5814 2.6308 9 1 1.5527 6.0971 1.7259 10 7 3.3416 5.6165 2.7541 11 6 3.6163 6.2768 3.8936 12 8 4.7430 6.4859 4.2984 13 7 2.5105 6.6775 4.5313 14 6 1.3950 6.3157 3.8673 15 8 0.2471 6.5337 4.1907 16 6 2.0421 -0.7246 -1.2500 17 7 1.6981 -2.1508 -1.1331 18 6 1.0637 -2.8079 -2.1534 19 1 0.4507 -3.6714 -1.9409 20 6 1.2085 -2.3644 -3.4608 21 7 2.1902 -1.5451 -3.7727 22 14 0.0103 -2.9303 -4.7772 23 1 -1.1327 -1.9846 -4.8458 24 1 0.7005 -2.9687 -6.0914 25 1 -0.4899 -4.2875 -4.4409 26 6 2.0542 -2.8493 0.1121 27 6 1.5406 -2.0208 1.2951 28 8 2.0075 -0.6758 1.1658 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6781 1.9563 -0.8900 33 1 3.1311 1.4414 0.0005 34 1 0.9954 1.6620 1.8349 35 1 0.2781 4.1347 2.6313 36 1 1.7306 3.6270 3.5261 37 1 3.9845 5.2380 2.1342 38 1 2.5115 7.1672 5.3686 39 1 1.5698 -0.3037 -2.1377 40 1 3.1240 -0.6134 -1.3215 41 1 2.2912 -1.2348 -4.6862 42 1 3.1373 -2.9519 0.1785 43 1 1.5900 -3.8354 0.1255 44 1 1.9122 -2.4472 2.2269 45 1 0.4506 -2.0289 1.2993 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108002288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:12 Heat of formation + Delta-G solvation = -98.477721 kcal Electronic energy + Delta-G solvation = -30278.676769 eV Core-core repulsion = 25912.070758 eV Total energy + Delta-G solvation = -4366.606011 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.74162 -39.97926 -39.00785 -38.90356 -36.56610 -35.14287 -34.45566 -34.30633 -32.16519 -31.33751 -30.98516 -28.04043 -27.01286 -26.15500 -24.96058 -23.31218 -23.08058 -21.98175 -21.29380 -20.54072 -18.87111 -18.68892 -17.74338 -17.17982 -17.03422 -16.86356 -16.25316 -16.05068 -15.84713 -15.47820 -15.32526 -15.15236 -14.57208 -14.42785 -14.26586 -14.11884 -13.77201 -13.63974 -13.36430 -13.09929 -12.93593 -12.69488 -12.26868 -11.92779 -11.67627 -11.43854 -11.27421 -11.09347 -10.89689 -10.78932 -10.75101 -10.71390 -10.39522 -10.30341 -10.16373 -9.97501 -9.83882 -9.62524 -9.15337 -9.01789 -8.60646 -6.81676 -5.91231 -3.34828 1.13978 2.05955 2.46026 2.64087 2.71099 3.10707 3.29403 3.36831 3.38184 3.61155 4.05404 4.14520 4.37592 4.42639 4.65810 4.95861 5.02221 5.04893 5.17868 5.26791 5.37033 5.42700 5.58363 5.60385 5.83456 5.84989 5.90195 5.97833 6.04850 6.20550 6.32922 6.43103 6.48472 6.56697 6.57561 6.66866 6.74571 6.95580 6.98841 7.37567 7.42707 7.64681 7.78034 7.80947 8.07969 8.26121 9.04098 9.66973 10.23755 11.16804 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021093 B = 0.002324 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.161317 B =12043.452244 C =12262.250896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.077 3.923 3 C 0.139 3.861 4 N -0.711 5.711 5 C 0.514 3.486 6 O -0.545 6.545 7 C -0.145 4.145 8 C 0.110 3.890 9 H 0.139 0.861 10 N -0.708 5.708 11 C 0.700 3.300 12 O -0.545 6.545 13 N -0.680 5.680 14 C 0.530 3.470 15 O -0.465 6.465 16 C 0.160 3.840 17 N -0.591 5.591 18 C -0.255 4.255 19 H 0.069 0.931 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.904 3.096 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.109 3.891 27 C 0.046 3.954 28 O -0.385 6.385 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.404 0.596 35 H 0.121 0.879 36 H 0.106 0.894 37 H 0.449 0.551 38 H 0.433 0.567 39 H 0.097 0.903 40 H 0.029 0.971 41 H 0.256 0.744 42 H 0.026 0.974 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.654 11.838 14.828 19.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 C 0.016 3.984 4 N -0.361 5.361 5 C 0.299 3.701 6 O -0.424 6.424 7 C -0.186 4.186 8 C 0.000 4.000 9 H 0.157 0.843 10 N -0.375 5.375 11 C 0.399 3.601 12 O -0.419 6.419 13 N -0.351 5.351 14 C 0.316 3.684 15 O -0.334 6.334 16 C 0.033 3.967 17 N -0.314 5.314 18 C -0.385 4.385 19 H 0.086 0.914 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.733 3.267 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.204 1.204 26 C -0.018 4.018 27 C -0.032 4.032 28 O -0.304 6.304 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.239 0.761 35 H 0.139 0.861 36 H 0.124 0.876 37 H 0.296 0.704 38 H 0.275 0.725 39 H 0.115 0.885 40 H 0.047 0.953 41 H 0.066 0.934 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.024 12.535 14.491 19.398 hybrid contribution -0.749 -0.705 -0.532 1.158 sum -3.774 11.830 13.960 18.683 Atomic orbital electron populations 1.22211 0.95689 1.03346 1.00716 1.22567 0.93598 0.90598 0.89661 1.21418 1.00001 0.90009 0.87022 1.45962 1.52945 1.11197 1.26015 1.20175 0.80767 0.82317 0.86801 1.90711 1.38418 1.66203 1.47055 1.21892 1.04337 0.93192 0.99198 1.21768 0.82068 0.97122 0.99043 0.84346 1.45702 1.07499 1.59696 1.24572 1.15936 0.84035 0.78880 0.81222 1.91069 1.20251 1.60903 1.69635 1.44318 1.08081 1.55573 1.27117 1.20753 0.84731 0.78067 0.84897 1.90868 1.17881 1.53792 1.70854 1.21291 0.97826 0.83975 0.93567 1.43999 1.68663 1.04914 1.13846 1.19170 1.21683 1.12231 0.85367 0.91374 1.25042 0.97260 1.00084 0.97108 1.70009 1.29109 1.36794 1.18619 0.86271 0.80664 0.78469 0.81259 1.21343 1.21650 1.20421 1.21599 0.97586 0.95259 0.87317 1.23041 0.98319 0.83024 0.98777 1.87802 1.73020 1.25901 1.43714 0.91838 0.90770 0.93944 0.89828 0.90644 0.76055 0.86094 0.87592 0.70368 0.72495 0.88532 0.95263 0.93384 0.95626 0.92006 0.90147 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 7.92 37.16 0.29 -2.21 16 2 C 0.08 1.29 0.76 -90.47 -0.07 1.23 16 3 C 0.14 2.06 4.82 -4.04 -0.02 2.05 16 4 N -0.71 -8.05 5.15 -60.29 -0.31 -8.36 16 5 C 0.51 5.40 7.71 -10.98 -0.08 5.32 16 6 O -0.55 -7.35 14.85 5.56 0.08 -7.26 16 7 C -0.15 -0.97 5.47 -27.88 -0.15 -1.12 16 8 C 0.11 0.78 3.19 -68.20 -0.22 0.56 16 9 H 0.14 0.90 8.07 -51.93 -0.42 0.48 16 10 N -0.71 -5.97 5.85 -59.19 -0.35 -6.32 16 11 C 0.70 6.67 8.99 -88.02 -0.79 5.88 16 12 O -0.55 -7.28 18.04 5.33 0.10 -7.18 16 13 N -0.68 -4.72 5.70 -15.79 -0.09 -4.81 16 14 C 0.53 3.95 8.14 -10.55 -0.09 3.86 16 15 O -0.47 -4.56 18.02 5.59 0.10 -4.46 16 16 C 0.16 3.51 4.11 -3.52 -0.01 3.50 16 17 N -0.59 -13.74 2.57 -171.82 -0.44 -14.18 16 18 C -0.26 -6.55 9.65 -15.06 -0.15 -6.70 16 19 H 0.07 1.72 7.88 -52.48 -0.41 1.31 16 20 C 0.00 0.11 4.94 -17.43 -0.09 0.02 16 21 N -0.90 -24.88 11.14 55.49 0.62 -24.26 16 22 Si 0.90 20.69 29.59 -169.99 -5.03 15.66 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 C 0.11 2.12 6.74 -3.53 -0.02 2.10 16 27 C 0.05 0.74 6.60 37.31 0.25 0.99 16 28 O -0.38 -6.46 9.98 -35.23 -0.35 -6.81 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.29 6.11 -51.93 -0.32 0.97 16 31 H 0.04 0.52 6.87 -51.93 -0.36 0.17 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.40 3.94 7.20 -40.82 -0.29 3.65 16 35 H 0.12 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.45 4.12 8.01 -40.82 -0.33 3.79 16 38 H 0.43 2.15 8.96 -40.82 -0.37 1.78 16 39 H 0.10 2.36 6.14 -51.93 -0.32 2.04 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 44 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.05 0.75 6.25 -51.93 -0.32 0.43 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -32.47 368.15 -7.34 -39.81 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.07 Total: 7.15 kcal Atomic # 6 Polarization: 16.62 SS G_CDS: -1.15 Total: 15.47 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -0.57 Total: -57.93 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.07 Total: -25.72 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.47 -7.34 -39.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108002288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.667 kcal (2) G-P(sol) polarization free energy of solvation -32.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds