Wall clock time and date at job start Sat Apr 11 2020 06:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.51272 * 2 1 4 4 N 1.46503 * 109.47277 * 59.99856 * 3 2 1 5 5 C 1.34769 * 120.00039 * 180.27659 * 4 3 2 6 6 O 1.21274 * 120.00484 * 359.72438 * 5 4 3 7 7 C 1.50709 * 119.99850 * 179.72304 * 5 4 3 8 8 C 1.53000 * 109.46935 * 180.02562 * 7 5 4 9 9 H 1.08997 * 110.53705 * 57.82915 * 8 7 5 10 10 N 1.47313 * 110.59557 * 294.99945 * 8 7 5 11 11 C 1.34533 * 106.61794 * 241.47551 * 10 8 7 12 12 O 1.21538 * 123.76812 * 180.02562 * 11 10 8 13 13 N 1.33787 * 112.45898 * 0.02562 * 11 10 8 14 14 C 1.34768 * 111.64375 * 0.02562 * 13 11 10 15 15 O 1.21238 * 127.15979 * 180.02562 * 14 13 11 16 16 C 1.53294 * 109.51691 * 239.89917 * 2 1 3 17 17 N 1.47169 * 108.37355 * 292.27789 * 16 2 1 18 18 C 1.36937 * 120.94433 * 129.48183 * 17 16 2 19 19 H 1.08004 * 120.00164 * 206.29010 * 18 17 16 20 20 C 1.38816 * 119.99908 * 26.29434 * 18 17 16 21 21 N 1.31615 * 119.99839 * 16.88798 * 20 18 17 22 22 Si 1.86792 * 119.99943 * 196.89082 * 20 18 17 23 23 H 1.48504 * 109.47450 * 89.99902 * 22 20 18 24 24 H 1.48498 * 109.47507 * 210.00091 * 22 20 18 25 25 H 1.48499 * 109.47383 * 330.00170 * 22 20 18 26 26 C 1.47152 * 118.07490 * 309.54570 * 17 16 2 27 27 C 1.53292 * 108.38562 * 50.50013 * 26 17 16 28 28 O 1.42957 * 109.22381 * 307.70129 * 27 26 17 29 29 H 1.08998 * 109.46713 * 60.00293 * 1 2 3 30 30 H 1.09006 * 109.46820 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47244 * 300.00016 * 1 2 3 32 32 H 1.09002 * 109.47128 * 299.99840 * 3 2 1 33 33 H 1.09002 * 109.47088 * 179.97438 * 3 2 1 34 34 H 0.97007 * 119.99692 * 0.02562 * 4 3 2 35 35 H 1.09001 * 109.46950 * 299.99905 * 7 5 4 36 36 H 1.08994 * 109.46800 * 60.00104 * 7 5 4 37 37 H 0.96999 * 126.69521 * 61.51561 * 10 8 7 38 38 H 0.96999 * 124.18483 * 179.97438 * 13 11 10 39 39 H 1.09005 * 109.68024 * 52.04932 * 16 2 1 40 40 H 1.08994 * 109.68533 * 172.60705 * 16 2 1 41 41 H 0.96999 * 119.99893 * 180.02562 * 21 20 18 42 42 H 1.09001 * 109.68061 * 290.77758 * 26 17 16 43 43 H 1.08996 * 109.68364 * 170.22666 * 26 17 16 44 44 H 1.09005 * 109.51213 * 187.77770 * 27 26 17 45 45 H 1.09000 * 109.50933 * 67.62404 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4422 0.0000 4 7 1.5532 2.1332 1.1962 5 6 1.8751 3.4248 1.4066 6 8 2.5728 4.0138 0.6084 7 6 1.3681 4.1374 2.6339 8 6 1.8740 5.5814 2.6308 9 1 1.5527 6.0971 1.7259 10 7 3.3416 5.6165 2.7541 11 6 3.6163 6.2768 3.8936 12 8 4.7430 6.4859 4.2984 13 7 2.5105 6.6775 4.5313 14 6 1.3950 6.3157 3.8673 15 8 0.2471 6.5337 4.1907 16 6 2.0421 -0.7246 -1.2500 17 7 1.6981 -2.1508 -1.1331 18 6 1.0637 -2.8079 -2.1534 19 1 0.4507 -3.6714 -1.9409 20 6 1.2085 -2.3644 -3.4608 21 7 2.1902 -1.5451 -3.7727 22 14 0.0103 -2.9303 -4.7772 23 1 -1.1327 -1.9846 -4.8458 24 1 0.7005 -2.9687 -6.0914 25 1 -0.4899 -4.2875 -4.4409 26 6 2.0542 -2.8493 0.1121 27 6 1.5406 -2.0208 1.2951 28 8 2.0075 -0.6758 1.1658 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6781 1.9563 -0.8900 33 1 3.1311 1.4414 0.0005 34 1 0.9954 1.6620 1.8349 35 1 0.2781 4.1347 2.6313 36 1 1.7306 3.6270 3.5261 37 1 3.9845 5.2380 2.1342 38 1 2.5115 7.1672 5.3686 39 1 1.5698 -0.3037 -2.1377 40 1 3.1240 -0.6134 -1.3215 41 1 2.2912 -1.2348 -4.6862 42 1 3.1373 -2.9519 0.1785 43 1 1.5900 -3.8354 0.1255 44 1 1.9122 -2.4472 2.2269 45 1 0.4506 -2.0289 1.2993 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108002288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:11 Heat of formation + Delta-G solvation = -126.212553 kcal Electronic energy + Delta-G solvation = -30279.879441 eV Core-core repulsion = 25912.070758 eV Total energy + Delta-G solvation = -4367.808684 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.42483 -41.08728 -40.17254 -39.72300 -37.37139 -36.52044 -35.90438 -35.00644 -33.34256 -33.17573 -31.79905 -29.55731 -28.13416 -27.67278 -26.00959 -24.96542 -23.77820 -23.01261 -22.44676 -21.43998 -20.28331 -19.43254 -18.94426 -18.49286 -17.83227 -17.65154 -17.34672 -17.03863 -16.87286 -16.64142 -16.40916 -16.17887 -16.03595 -15.57301 -15.38427 -15.26368 -15.06286 -15.00447 -14.62701 -14.24116 -14.08870 -13.91443 -13.40167 -13.16890 -12.89849 -12.84163 -12.76168 -12.49881 -12.43913 -12.22509 -12.12117 -11.92876 -11.82610 -11.50379 -11.46977 -11.15862 -10.92856 -10.71949 -10.54709 -10.48433 -10.06659 -8.70611 -7.88987 -5.35592 0.48556 1.40851 1.46839 1.48413 1.56721 1.63135 1.91521 2.00499 2.28094 2.49172 2.81644 2.95385 3.25748 3.44830 3.53074 3.84660 3.89564 4.00861 4.06017 4.14696 4.38372 4.44563 4.48697 4.51167 4.63132 4.66357 4.68786 4.74754 4.83586 5.00674 5.06595 5.07859 5.15281 5.23569 5.40029 5.40720 5.56174 5.63078 5.75796 5.88593 6.30489 6.34159 6.39250 6.56207 7.08448 7.09040 7.23783 7.77620 8.30975 9.16400 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021093 B = 0.002324 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.161317 B =12043.452244 C =12262.250896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.092 3.908 3 C 0.151 3.849 4 N -0.704 5.704 5 C 0.515 3.485 6 O -0.577 6.577 7 C -0.133 4.133 8 C 0.110 3.890 9 H 0.149 0.851 10 N -0.706 5.706 11 C 0.704 3.296 12 O -0.586 6.586 13 N -0.667 5.667 14 C 0.545 3.455 15 O -0.483 6.483 16 C 0.167 3.833 17 N -0.608 5.608 18 C -0.258 4.258 19 H 0.072 0.928 20 C -0.049 4.049 21 N -0.935 5.935 22 Si 0.965 3.035 23 H -0.283 1.283 24 H -0.299 1.299 25 H -0.268 1.268 26 C 0.101 3.899 27 C 0.054 3.946 28 O -0.384 6.384 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.416 0.584 35 H 0.150 0.850 36 H 0.125 0.875 37 H 0.446 0.554 38 H 0.442 0.558 39 H 0.066 0.934 40 H -0.009 1.009 41 H 0.250 0.750 42 H 0.011 0.989 43 H 0.070 0.930 44 H 0.117 0.883 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.813 12.027 17.003 21.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.051 3.949 3 C 0.026 3.974 4 N -0.356 5.356 5 C 0.302 3.698 6 O -0.457 6.457 7 C -0.173 4.173 8 C 0.001 3.999 9 H 0.166 0.834 10 N -0.370 5.370 11 C 0.403 3.597 12 O -0.463 6.463 13 N -0.338 5.338 14 C 0.331 3.669 15 O -0.353 6.353 16 C 0.040 3.960 17 N -0.332 5.332 18 C -0.388 4.388 19 H 0.090 0.910 20 C -0.244 4.244 21 N -0.581 5.581 22 Si 0.793 3.207 23 H -0.209 1.209 24 H -0.226 1.226 25 H -0.193 1.193 26 C -0.025 4.025 27 C -0.023 4.023 28 O -0.303 6.303 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.253 0.747 35 H 0.168 0.832 36 H 0.143 0.857 37 H 0.292 0.708 38 H 0.287 0.713 39 H 0.085 0.915 40 H 0.009 0.991 41 H 0.059 0.941 42 H 0.029 0.971 43 H 0.088 0.912 44 H 0.134 0.866 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.230 12.713 16.725 21.650 hybrid contribution -0.019 -0.812 -1.197 1.447 sum -5.249 11.901 15.528 20.256 Atomic orbital electron populations 1.22118 0.93909 1.02762 1.02298 1.22217 0.94684 0.90866 0.87157 1.21008 0.98755 0.89189 0.88496 1.45775 1.53205 1.11559 1.25017 1.20799 0.79828 0.81710 0.87446 1.90714 1.39743 1.66756 1.48506 1.21883 1.05912 0.92099 0.97451 1.21885 0.81018 0.97714 0.99300 0.83417 1.45740 1.08250 1.59034 1.24012 1.15969 0.83812 0.78593 0.81313 1.91046 1.21986 1.62562 1.70716 1.44149 1.07231 1.55119 1.27286 1.20584 0.84242 0.77529 0.84549 1.90879 1.18499 1.54635 1.71256 1.21078 0.95328 0.84266 0.95315 1.44265 1.68649 1.05675 1.14595 1.19499 1.21149 1.12030 0.86120 0.91000 1.25763 0.98763 1.00815 0.99107 1.70176 1.30955 1.38527 1.18490 0.85299 0.78590 0.78465 0.78298 1.20932 1.22628 1.19302 1.21824 0.96951 0.96386 0.87311 1.23082 0.99112 0.81858 0.98294 1.87816 1.73322 1.26304 1.42855 0.92636 0.92365 0.89950 0.90693 0.92654 0.74670 0.83221 0.85726 0.70763 0.71344 0.91521 0.99114 0.94076 0.97123 0.91176 0.86554 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.43 7.92 71.98 0.57 -3.86 16 2 C 0.09 3.04 0.76 -10.69 -0.01 3.03 16 3 C 0.15 4.43 4.82 86.38 0.42 4.84 16 4 N -0.70 -14.28 5.15 -463.05 -2.39 -16.67 16 5 C 0.51 9.64 7.71 87.66 0.68 10.32 16 6 O -0.58 -14.94 14.85 -3.01 -0.04 -14.99 16 7 C -0.13 -1.30 5.47 29.85 0.16 -1.13 16 8 C 0.11 1.27 3.19 44.37 0.14 1.41 16 9 H 0.15 1.54 8.07 -2.39 -0.02 1.52 16 10 N -0.71 -10.87 5.85 -459.60 -2.69 -13.55 16 11 C 0.70 12.55 8.99 179.44 1.61 14.16 16 12 O -0.59 -15.44 18.04 -3.84 -0.07 -15.51 16 13 N -0.67 -7.96 5.70 -441.12 -2.52 -10.47 16 14 C 0.55 6.65 8.14 87.94 0.72 7.37 16 15 O -0.48 -8.10 18.02 -2.90 -0.05 -8.15 16 16 C 0.17 7.60 4.11 86.35 0.36 7.95 16 17 N -0.61 -28.68 2.57 -697.50 -1.79 -30.47 16 18 C -0.26 -13.38 9.65 84.03 0.81 -12.57 16 19 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 20 C -0.05 -2.62 4.94 84.86 0.42 -2.20 16 21 N -0.94 -53.73 11.14 21.65 0.24 -53.49 16 22 Si 0.97 43.10 29.59 68.60 2.03 45.13 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 24 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 C 0.10 3.87 6.74 86.35 0.58 4.45 16 27 C 0.05 1.58 6.60 72.08 0.48 2.05 16 28 O -0.38 -12.09 9.98 -148.98 -1.49 -13.58 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.06 1.89 6.11 -2.38 -0.01 1.88 16 31 H 0.08 1.71 6.87 -2.39 -0.02 1.70 16 32 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.42 6.51 7.20 -92.70 -0.67 5.84 16 35 H 0.15 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.45 7.84 8.01 -92.71 -0.74 7.10 16 38 H 0.44 3.60 8.96 -92.71 -0.83 2.77 16 39 H 0.07 3.42 6.14 -2.38 -0.01 3.41 16 40 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 41 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 42 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.07 2.53 7.96 -2.39 -0.02 2.51 16 44 H 0.12 2.63 8.14 -2.38 -0.02 2.61 16 45 H 0.06 1.69 6.25 -2.39 -0.01 1.68 16 Total: -1.00 -73.09 368.15 -3.00 -76.09 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -1.17 Total: 19.84 kcal Atomic # 6 Polarization: 28.88 SS G_CDS: 6.93 Total: 35.81 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -9.14 Total: -124.66 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -1.65 Total: -52.22 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -73.09 -3.00 -76.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108002288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.123 kcal (2) G-P(sol) polarization free energy of solvation -73.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds