Wall clock time and date at job start Sat Apr 11 2020 06:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 114.00244 * 2 1 4 4 C 1.53006 * 109.46894 * 299.99935 * 3 2 1 5 5 C 1.52994 * 109.47506 * 59.99847 * 3 2 1 6 6 O 1.42899 * 109.47186 * 64.99870 * 5 3 2 7 7 C 1.52999 * 109.47063 * 180.02562 * 3 2 1 8 8 N 1.46496 * 109.47277 * 64.99782 * 7 3 2 9 9 C 1.34781 * 120.00327 * 179.97438 * 8 7 3 10 10 O 1.21364 * 119.99337 * 0.02562 * 9 8 7 11 11 C 1.49337 * 120.00373 * 179.97438 * 9 8 7 12 12 O 1.21389 * 119.99697 * 0.02562 * 11 9 8 13 13 N 1.34768 * 120.00105 * 179.97438 * 11 9 8 14 14 C 1.39932 * 120.00299 * 179.97438 * 13 11 9 15 15 C 1.40466 * 125.97706 * 0.02562 * 14 13 11 16 16 C 1.35222 * 107.86479 * 179.71737 * 15 14 13 17 17 N 1.34986 * 107.87618 * 0.42340 * 16 15 14 18 18 C 1.46495 * 125.97298 * 179.83859 * 17 16 15 19 19 C 1.50702 * 109.47571 * 124.71954 * 18 17 16 20 20 H 1.08002 * 119.99446 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00072 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 179.72119 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72576 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72423 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72459 * 23 21 19 27 27 N 1.31275 * 125.98291 * 179.97438 * 14 13 11 28 28 H 1.09001 * 109.46865 * 59.99999 * 1 2 3 29 29 H 1.08999 * 109.47213 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47012 * 300.00297 * 1 2 3 31 31 H 1.08995 * 109.47365 * 300.00127 * 4 3 2 32 32 H 1.09001 * 109.46899 * 60.00216 * 4 3 2 33 33 H 1.08999 * 109.47106 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.47668 * 184.99988 * 5 3 2 35 35 H 1.09004 * 109.47278 * 305.00162 * 5 3 2 36 36 H 0.96698 * 114.00696 * 179.97438 * 6 5 3 37 37 H 1.08996 * 109.47125 * 304.99841 * 7 3 2 38 38 H 1.09006 * 109.46662 * 184.99624 * 7 3 2 39 39 H 0.97003 * 119.99851 * 0.02562 * 8 7 3 40 40 H 0.97003 * 120.00090 * 0.02562 * 13 11 9 41 41 H 1.07996 * 126.06883 * 359.97438 * 15 14 13 42 42 H 1.07998 * 126.06003 * 180.26767 * 16 15 14 43 43 H 1.09000 * 109.47378 * 4.71613 * 18 17 16 44 44 H 1.09001 * 109.47153 * 244.71734 * 18 17 16 45 45 H 0.96999 * 120.00128 * 180.27192 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5588 2.0646 -1.2493 5 6 1.5589 2.0647 1.2491 6 8 2.0793 1.4192 2.4130 7 6 3.5355 1.1845 -0.0006 8 7 3.9757 0.5642 -1.2527 9 6 5.2884 0.3562 -1.4767 10 8 6.1057 0.6825 -0.6409 11 6 5.7371 -0.2766 -2.7528 12 8 4.9195 -0.6033 -3.5885 13 7 7.0497 -0.4841 -2.9770 14 6 7.4702 -1.0775 -4.1724 15 6 6.6369 -1.5034 -5.2200 16 6 7.4234 -2.0146 -6.1939 17 7 8.7052 -1.9273 -5.7800 18 6 9.8835 -2.3704 -6.5292 19 6 10.8508 -1.2232 -6.6688 20 1 10.6115 -0.2603 -6.2423 21 6 12.0407 -1.4028 -7.3417 22 7 12.8824 -0.4002 -7.4682 23 14 12.4543 -3.0682 -8.0799 24 1 13.1899 -3.8837 -7.0803 25 1 11.2001 -3.7658 -8.4613 26 1 13.3015 -2.8791 -9.2846 27 7 8.7124 -1.3329 -4.5116 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8804 1.5237 -2.1393 32 1 0.4722 2.1507 -1.2493 33 1 2.0026 3.0602 -1.2496 34 1 1.9294 3.0890 1.2055 35 1 0.4699 2.0739 1.2951 36 1 1.8327 1.8478 3.2440 37 1 3.8515 0.5681 0.8409 38 1 3.9786 2.1764 0.0889 39 1 3.3225 0.3038 -1.9208 40 1 7.7031 -0.2227 -2.3093 41 1 5.5597 -1.4311 -5.2451 42 1 7.0856 -2.4230 -7.1350 43 1 9.5782 -2.7106 -7.5188 44 1 10.3660 -3.1897 -5.9963 45 1 13.7178 -0.5255 -7.9450 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118312792.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:36 Heat of formation + Delta-G solvation = -62.787659 kcal Electronic energy + Delta-G solvation = -28957.660062 eV Core-core repulsion = 24592.601688 eV Total energy + Delta-G solvation = -4365.058374 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.12301 -40.42995 -39.71964 -38.37567 -36.67765 -35.63324 -34.70946 -33.28582 -32.24020 -31.31861 -29.48756 -28.34380 -27.48072 -26.92595 -26.53179 -24.40621 -22.47107 -21.32131 -20.73032 -20.29181 -19.71112 -18.50246 -17.97464 -17.42700 -17.05818 -16.69019 -16.55476 -16.09738 -16.00771 -15.75978 -15.35223 -14.99981 -14.78738 -14.46804 -14.19643 -14.10443 -13.92641 -13.61383 -13.18446 -13.07057 -12.96144 -12.70506 -12.58893 -12.42376 -12.35980 -12.16014 -12.11783 -11.58798 -11.16283 -11.06007 -10.88120 -10.62274 -10.56850 -10.14657 -10.09703 -10.00302 -9.58892 -9.52708 -9.47190 -8.76784 -8.27341 -7.62870 -6.23273 -4.26033 1.23806 2.06130 2.61859 3.01623 3.08467 3.14207 3.17932 3.21437 3.26850 3.61884 3.65164 3.81294 4.03476 4.22816 4.25788 4.40552 4.53986 4.66407 4.75578 4.83865 4.97899 5.02618 5.04074 5.12054 5.23022 5.32131 5.34884 5.48299 5.60830 5.63863 5.93754 6.04942 6.27314 6.35630 6.41753 6.60846 6.66725 6.91343 7.06560 7.20683 7.21975 7.39395 7.67149 7.75921 7.96233 8.31837 8.48249 8.86263 9.31150 10.89330 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031074 B = 0.001833 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.853343 B =15268.614675 C =15714.529778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.364 6.364 3 C 0.105 3.895 4 C -0.185 4.185 5 C 0.053 3.947 6 O -0.559 6.559 7 C 0.139 3.861 8 N -0.695 5.695 9 C 0.516 3.484 10 O -0.515 6.515 11 C 0.515 3.485 12 O -0.500 6.500 13 N -0.599 5.599 14 C 0.255 3.745 15 C -0.282 4.282 16 C 0.054 3.946 17 N -0.315 5.315 18 C 0.231 3.769 19 C -0.536 4.536 20 H 0.086 0.914 21 C 0.076 3.924 22 N -0.887 5.887 23 Si 0.875 3.125 24 H -0.271 1.271 25 H -0.265 1.265 26 H -0.280 1.280 27 N -0.287 5.287 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.381 0.619 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.415 0.585 40 H 0.424 0.576 41 H 0.163 0.837 42 H 0.171 0.829 43 H 0.055 0.945 44 H 0.039 0.961 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.073 4.297 15.552 32.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.283 6.283 3 C 0.065 3.935 4 C -0.242 4.242 5 C -0.026 4.026 6 O -0.364 6.364 7 C 0.016 3.984 8 N -0.350 5.350 9 C 0.296 3.704 10 O -0.390 6.390 11 C 0.294 3.706 12 O -0.373 6.373 13 N -0.247 5.247 14 C 0.001 3.999 15 C -0.313 4.313 16 C -0.096 4.096 17 N -0.097 5.097 18 C 0.112 3.888 19 C -0.574 4.574 20 H 0.104 0.896 21 C -0.128 4.128 22 N -0.524 5.524 23 Si 0.701 3.299 24 H -0.197 1.197 25 H -0.190 1.190 26 H -0.206 1.206 27 N -0.118 5.118 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.228 0.772 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.253 0.747 40 H 0.262 0.738 41 H 0.180 0.820 42 H 0.188 0.812 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -26.200 3.821 15.324 30.592 hybrid contribution -0.896 -0.133 -0.282 0.949 sum -27.096 3.688 15.041 31.209 Atomic orbital electron populations 1.22852 0.81227 1.03218 0.99993 1.88086 1.19695 1.25713 1.94821 1.21792 0.93565 0.84667 0.93522 1.22439 1.02593 1.01557 0.97629 1.22740 0.97995 0.95758 0.86085 1.86574 1.77265 1.56643 1.15953 1.21350 0.90587 0.99722 0.86788 1.45649 1.06990 1.61321 1.21012 1.19834 0.83443 0.80057 0.87098 1.90802 1.52638 1.49709 1.45834 1.19914 0.82568 0.80489 0.87591 1.90701 1.52463 1.48904 1.45258 1.42000 1.07619 1.57532 1.17548 1.19026 0.92470 1.00387 0.87980 1.21543 1.01303 1.14108 0.94353 1.22569 0.84603 1.02124 1.00284 1.48696 1.06421 1.43129 1.11465 1.20099 0.81722 0.96954 0.90021 1.21103 1.01774 0.97545 1.36977 0.89589 1.24837 0.95606 0.96908 0.95422 1.69873 1.10073 1.31050 1.41364 0.86883 0.79248 0.84264 0.79500 1.19680 1.18965 1.20590 1.77477 1.16158 1.19682 0.98484 0.93562 0.89294 0.93861 0.90417 0.91224 0.90472 0.92135 0.92535 0.77224 0.88899 0.89420 0.74709 0.73808 0.81962 0.81154 0.92755 0.94304 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 10.22 101.05 1.03 1.16 16 2 O -0.36 -3.10 10.26 -40.09 -0.41 -3.52 16 3 C 0.10 0.71 0.59 -90.62 -0.05 0.65 16 4 C -0.18 -0.91 8.02 37.16 0.30 -0.61 16 5 C 0.05 0.26 5.75 37.15 0.21 0.47 16 6 O -0.56 -3.54 12.85 -40.09 -0.51 -4.06 16 7 C 0.14 1.24 4.56 -4.04 -0.02 1.22 16 8 N -0.69 -7.22 5.18 -60.77 -0.31 -7.53 16 9 C 0.52 6.84 7.89 -11.64 -0.09 6.75 16 10 O -0.51 -7.83 16.48 5.48 0.09 -7.74 16 11 C 0.51 7.78 7.85 -11.64 -0.09 7.69 16 12 O -0.50 -8.02 13.60 5.46 0.07 -7.94 16 13 N -0.60 -10.05 5.43 -11.58 -0.06 -10.12 16 14 C 0.25 5.12 8.10 -154.55 -1.25 3.87 16 15 C -0.28 -5.33 9.60 -39.82 -0.38 -5.71 16 16 C 0.05 1.01 11.43 -17.24 -0.20 0.81 16 17 N -0.32 -7.09 3.67 -62.56 -0.23 -7.32 16 18 C 0.23 5.44 5.33 -5.20 -0.03 5.41 16 19 C -0.54 -15.11 9.79 -34.44 -0.34 -15.45 16 20 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 21 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 22 N -0.89 -26.61 13.96 55.43 0.77 -25.83 16 23 Si 0.87 20.13 27.47 -169.99 -4.67 15.46 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 25 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 N -0.29 -6.64 12.42 31.41 0.39 -6.25 16 28 H 0.05 0.19 6.42 -51.93 -0.33 -0.14 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.19 6.31 -51.93 -0.33 -0.14 16 31 H 0.08 0.45 6.57 -51.93 -0.34 0.10 16 32 H 0.07 0.25 6.54 -51.93 -0.34 -0.09 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.06 0.20 6.29 -51.93 -0.33 -0.13 16 36 H 0.38 0.70 9.12 45.56 0.42 1.11 16 37 H 0.09 1.02 7.73 -51.93 -0.40 0.62 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.42 3.96 6.45 -40.82 -0.26 3.69 16 40 H 0.42 6.61 8.29 -40.82 -0.34 6.27 16 41 H 0.16 2.87 5.91 -52.49 -0.31 2.56 16 42 H 0.17 2.49 8.06 -52.49 -0.42 2.06 16 43 H 0.05 1.17 7.12 -51.93 -0.37 0.80 16 44 H 0.04 0.90 7.57 -51.93 -0.39 0.51 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 377.99 15.07 5.70 5.70 Total: -1.00 -36.04 377.99 -5.22 -41.26 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -5.03 Total: 9.58 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -1.01 Total: 8.31 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.56 Total: -57.05 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.76 Total: -23.26 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.67 Total: 15.46 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.04 -5.22 -41.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118312792.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.526 kcal (2) G-P(sol) polarization free energy of solvation -36.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds