Wall clock time and date at job start Sat Apr 11 2020 06:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.34233 * 126.27900 * 2 1 4 4 H 0.96999 * 125.73844 * 0.02629 * 3 2 1 5 5 N 1.39927 * 108.52271 * 180.02562 * 3 2 1 6 6 C 1.30535 * 108.89272 * 359.75483 * 5 3 2 7 7 Cl 1.73604 * 126.00294 * 180.25394 * 6 5 3 8 8 C 1.38064 * 126.27861 * 180.02562 * 2 1 3 9 9 C 1.47382 * 126.42842 * 359.94323 * 8 2 1 10 10 O 1.21601 * 120.00056 * 89.99659 * 9 8 2 11 11 N 1.34784 * 119.99879 * 269.99980 * 9 8 2 12 12 C 1.46927 * 120.62995 * 359.71718 * 11 9 8 13 13 C 1.53626 * 108.53906 * 126.36585 * 12 11 9 14 14 C 1.53041 * 109.24183 * 54.85853 * 13 12 11 15 15 H 1.09010 * 109.45941 * 58.52811 * 14 13 12 16 16 C 1.53000 * 109.45179 * 178.49247 * 14 13 12 17 17 C 1.53036 * 109.53807 * 298.50777 * 14 13 12 18 18 H 1.09001 * 109.49825 * 301.41219 * 17 14 13 19 19 C 1.52999 * 109.52542 * 181.33305 * 17 14 13 20 20 N 1.46503 * 109.47339 * 175.14409 * 19 17 14 21 21 C 1.36931 * 120.00304 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99990 * 0.02562 * 21 20 19 23 23 C 1.38815 * 120.00397 * 179.97438 * 21 20 19 24 24 N 1.31618 * 119.99630 * 0.02562 * 23 21 20 25 25 Si 1.86791 * 120.00198 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46929 * 60.00541 * 25 23 21 27 27 H 1.48498 * 109.47198 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47744 * 300.00498 * 25 23 21 29 29 C 1.46923 * 120.62964 * 179.97438 * 11 9 8 30 30 H 1.09002 * 109.46651 * 269.97618 * 1 2 3 31 31 H 1.09000 * 109.46979 * 29.97357 * 1 2 3 32 32 H 1.09000 * 109.46715 * 149.98114 * 1 2 3 33 33 H 1.08998 * 109.58645 * 246.19910 * 12 11 9 34 34 H 1.09001 * 109.58579 * 6.63067 * 12 11 9 35 35 H 1.08990 * 109.63926 * 294.86483 * 13 12 11 36 36 H 1.09005 * 109.42826 * 174.72267 * 13 12 11 37 37 H 1.08996 * 109.47222 * 180.02562 * 16 14 13 38 38 H 1.09001 * 109.47245 * 300.06320 * 16 14 13 39 39 H 1.09000 * 109.46673 * 60.05706 * 16 14 13 40 40 H 1.09003 * 109.46848 * 295.14123 * 19 17 14 41 41 H 1.08997 * 109.47497 * 55.14478 * 19 17 14 42 42 H 0.97005 * 119.99377 * 0.02562 * 20 19 17 43 43 H 0.97003 * 119.99933 * 180.02562 * 24 23 21 44 44 H 1.09007 * 109.58781 * 353.37617 * 29 11 9 45 45 H 1.08998 * 109.58580 * 113.65434 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3014 1.0821 0.0000 4 1 2.0019 2.0047 0.0004 5 7 3.6340 0.6554 -0.0006 6 6 3.6599 -0.6497 0.0043 7 17 5.0843 -1.6421 0.0120 8 6 2.3240 -1.1130 -0.0005 9 6 1.8859 -2.5202 0.0000 10 8 1.7043 -3.1009 -1.0528 11 7 1.6865 -3.1635 1.1676 12 6 1.9077 -2.4771 2.4477 13 6 0.6375 -2.6134 3.3009 14 6 0.2774 -4.0947 3.4363 15 1 1.1096 -4.6304 3.8931 16 6 -0.9658 -4.2384 4.3165 17 6 -0.0077 -4.6808 2.0517 18 1 -0.8236 -4.1294 1.5842 19 6 -0.4000 -6.1531 2.1905 20 7 -0.7844 -6.6818 0.8794 21 6 -1.1760 -7.9881 0.7559 22 1 -1.2019 -8.6286 1.6251 23 6 -1.5409 -8.4889 -0.4863 24 7 -1.5099 -7.7082 -1.5455 25 14 -2.0744 -10.2710 -0.6549 26 1 -3.2687 -10.5126 0.1940 27 1 -2.4091 -10.5555 -2.0734 28 1 -0.9691 -11.1620 -0.2194 29 6 1.2493 -4.5660 1.1843 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5141 33 1 2.7505 -2.9340 2.9665 34 1 2.1160 -1.4228 2.2658 35 1 -0.1844 -2.0816 2.8218 36 1 0.8176 -2.1909 4.2895 37 1 -1.2223 -5.2933 4.4136 38 1 -0.7629 -3.8210 5.3028 39 1 -1.7982 -3.7031 3.8597 40 1 0.4473 -6.7199 2.5766 41 1 -1.2405 -6.2419 2.8787 42 1 -0.7609 -6.1065 0.0986 43 1 -1.7651 -8.0580 -2.4135 44 1 1.0231 -4.8904 0.1685 45 1 2.0403 -5.1904 1.5996 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132887413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:55 Heat of formation + Delta-G solvation = 36.649459 kcal Electronic energy + Delta-G solvation = -28253.214800 eV Core-core repulsion = 24333.177508 eV Total energy + Delta-G solvation = -3920.037292 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.86311 -39.82491 -37.74917 -37.04120 -34.89979 -33.63133 -33.00349 -31.95228 -31.45096 -29.74586 -28.41736 -27.54656 -25.55591 -23.76272 -23.15985 -22.23825 -21.86576 -21.17523 -19.80587 -18.91227 -17.91975 -17.01903 -16.64577 -15.96004 -15.51684 -15.37564 -15.01229 -14.81517 -14.34239 -14.00731 -13.92618 -13.73757 -13.50640 -13.41245 -13.00524 -12.94238 -12.73707 -12.59807 -12.42207 -12.20696 -11.95131 -11.86446 -11.70264 -11.47669 -11.00126 -10.95831 -10.85057 -10.76464 -10.55772 -10.26967 -10.12915 -9.96076 -9.76920 -9.72541 -9.54687 -8.95563 -8.79733 -8.42542 -6.83367 -5.67094 -2.96510 1.19944 1.22092 1.91285 2.56290 2.66869 3.22788 3.49372 3.53547 3.55072 4.18167 4.47315 4.58830 4.64325 4.75199 4.80462 4.91071 4.97657 5.07330 5.20334 5.32468 5.39087 5.42415 5.48400 5.61271 5.64705 5.69760 5.71396 5.78766 5.84907 5.94123 5.99197 6.06029 6.21738 6.27609 6.35550 6.48467 6.61765 6.63278 6.71455 6.85211 6.93709 6.95478 7.55577 7.76555 8.34618 8.50752 9.61696 10.20089 10.54216 11.55119 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013385 B = 0.003205 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.320312 B = 8734.767272 C = 9478.126319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.142 3.858 3 N -0.449 5.449 4 H 0.448 0.552 5 N -0.278 5.278 6 C 0.158 3.842 7 Cl 0.022 6.978 8 C -0.259 4.259 9 C 0.591 3.409 10 O -0.517 6.517 11 N -0.599 5.599 12 C 0.111 3.889 13 C -0.126 4.126 14 C -0.085 4.085 15 H 0.071 0.929 16 C -0.147 4.147 17 C -0.100 4.100 18 H 0.074 0.926 19 C 0.159 3.841 20 N -0.733 5.733 21 C -0.242 4.242 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.929 5.929 25 Si 0.905 3.095 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.120 3.880 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.053 0.947 40 H 0.018 0.982 41 H 0.027 0.973 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.105 0.895 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.189 21.385 10.455 24.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.010 3.990 3 N -0.158 5.158 4 H 0.294 0.706 5 N -0.104 5.104 6 C -0.034 4.034 7 Cl 0.049 6.951 8 C -0.275 4.275 9 C 0.376 3.624 10 O -0.391 6.391 11 N -0.332 5.332 12 C -0.013 4.013 13 C -0.164 4.164 14 C -0.104 4.104 15 H 0.090 0.910 16 C -0.204 4.204 17 C -0.119 4.119 18 H 0.092 0.908 19 C 0.031 3.969 20 N -0.377 5.377 21 C -0.373 4.373 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.736 3.264 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.002 4.002 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.036 0.964 41 H 0.044 0.956 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.123 0.877 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.903 21.821 9.891 25.228 hybrid contribution -0.634 -1.025 -0.356 1.257 sum 7.269 20.796 9.535 24.005 Atomic orbital electron populations 1.20668 0.85521 1.05395 1.04477 1.21433 0.94915 0.85870 0.96796 1.45826 1.02996 1.08610 1.58402 0.70624 1.77140 0.96568 1.10690 1.25957 1.22568 0.88861 0.90447 1.01548 1.98430 1.35158 1.64774 1.96709 1.19826 0.91062 0.94764 1.21809 1.17164 0.77282 0.84191 0.83750 1.90874 1.50181 1.67247 1.30821 1.48078 1.66619 1.13381 1.05148 1.21753 0.97783 0.97437 0.84300 1.22050 0.97487 0.97377 0.99530 1.21097 0.98521 0.94875 0.95886 0.91038 1.21877 0.97449 1.02662 0.98462 1.21694 0.97449 0.98358 0.94448 0.90767 1.20721 0.96788 0.89589 0.89838 1.42403 1.80468 1.10638 1.04212 1.19146 1.37041 0.87546 0.93588 0.91349 1.24737 1.02495 0.97896 0.95691 1.69662 1.54366 1.34926 0.98793 0.86302 0.78399 0.85078 0.76583 1.21380 1.21736 1.21326 1.21762 0.95693 0.79271 1.03435 0.88951 0.89921 0.88374 0.91363 0.90526 0.91568 0.91064 0.91622 0.93309 0.92824 0.96414 0.95570 0.78107 0.93467 0.87685 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.71 10.25 36.01 0.37 -0.34 16 2 C 0.14 1.36 7.19 -81.60 -0.59 0.77 16 3 N -0.45 -3.67 7.28 33.86 0.25 -3.43 16 4 H 0.45 1.87 8.96 -182.73 -1.64 0.23 16 5 N -0.28 -3.20 12.64 33.18 0.42 -2.79 16 6 C 0.16 2.03 7.89 -16.90 -0.13 1.90 16 7 Cl 0.02 0.27 29.19 -51.86 -1.51 -1.25 16 8 C -0.26 -3.37 3.86 -105.04 -0.41 -3.78 16 9 C 0.59 9.45 7.05 -12.54 -0.09 9.36 16 10 O -0.52 -10.75 16.52 5.28 0.09 -10.67 16 11 N -0.60 -8.48 2.97 -173.81 -0.52 -8.99 16 12 C 0.11 1.16 6.37 -3.48 -0.02 1.14 16 13 C -0.13 -1.20 5.38 -26.38 -0.14 -1.34 16 14 C -0.08 -0.99 2.23 -90.58 -0.20 -1.19 16 15 H 0.07 0.83 8.14 -51.92 -0.42 0.40 16 16 C -0.15 -1.64 8.82 37.16 0.33 -1.31 16 17 C -0.10 -1.56 1.92 -90.52 -0.17 -1.74 16 18 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 19 C 0.16 3.10 5.41 -4.04 -0.02 3.08 16 20 N -0.73 -18.63 5.38 -59.91 -0.32 -18.95 16 21 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 22 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -28.81 13.06 55.49 0.72 -28.09 16 25 Si 0.91 22.78 29.55 -169.99 -5.02 17.75 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 C 0.12 2.00 5.51 -3.73 -0.02 1.98 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.10 0.92 7.96 -51.93 -0.41 0.50 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.74 6.25 -51.93 -0.32 0.41 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.81 6.30 -51.93 -0.33 0.49 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.03 0.51 6.15 -51.93 -0.32 0.20 16 42 H 0.38 10.49 6.89 -40.82 -0.28 10.21 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 44 H 0.10 2.20 6.20 -51.93 -0.32 1.87 16 45 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 379.68 15.07 5.72 5.72 Total: -1.00 -35.27 379.68 -9.34 -44.61 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -7.82 Total: 4.98 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -1.35 Total: 1.10 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: 0.55 Total: -62.25 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.51 Total: -1.25 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.27 -9.34 -44.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132887413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.259 kcal (2) G-P(sol) polarization free energy of solvation -35.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds