Wall clock time and date at job start Sat Apr 11 2020 06:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47052 * 2 1 4 4 C 1.53002 * 109.47599 * 239.99910 * 2 1 3 5 5 O 1.45203 * 109.47132 * 119.99722 * 2 1 3 6 6 C 1.34640 * 116.99690 * 60.00253 * 5 2 1 7 7 O 1.21511 * 119.99997 * 359.97438 * 6 5 2 8 8 N 1.34770 * 119.99759 * 180.02562 * 6 5 2 9 9 O 1.41601 * 120.00035 * 180.02562 * 8 6 5 10 10 C 1.42898 * 114.00622 * 179.97438 * 9 8 6 11 11 C 1.50696 * 109.47403 * 179.97438 * 10 9 8 12 12 O 1.21290 * 120.00012 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99736 * 179.97438 * 11 10 9 14 14 C 1.40159 * 119.99983 * 179.97438 * 13 11 10 15 15 C 1.40409 * 125.97033 * 0.02562 * 14 13 11 16 16 C 1.35241 * 107.86602 * 179.73843 * 15 14 13 17 17 N 1.34966 * 107.86079 * 0.39163 * 16 15 14 18 18 C 1.46500 * 125.97782 * 179.87198 * 17 16 15 19 19 C 1.50706 * 109.47299 * 124.71059 * 18 17 16 20 20 H 1.07998 * 119.99503 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00434 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 359.72891 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72558 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72681 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72491 * 23 21 19 27 27 N 1.31219 * 125.97718 * 179.97438 * 14 13 11 28 28 H 1.08997 * 109.47681 * 300.00553 * 1 2 3 29 29 H 1.09008 * 109.46740 * 60.00172 * 1 2 3 30 30 H 1.08995 * 109.47039 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46973 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.47386 * 299.99569 * 3 2 1 33 33 H 1.09005 * 109.47050 * 60.00045 * 3 2 1 34 34 H 1.08995 * 109.47149 * 300.00207 * 4 2 1 35 35 H 1.08996 * 109.46752 * 59.99954 * 4 2 1 36 36 H 1.08997 * 109.46890 * 180.02562 * 4 2 1 37 37 H 0.97000 * 120.00476 * 359.97438 * 8 6 5 38 38 H 1.09001 * 109.46875 * 59.99586 * 10 9 8 39 39 H 1.09006 * 109.46878 * 300.00274 * 10 9 8 40 40 H 0.97003 * 120.00166 * 0.02562 * 13 11 10 41 41 H 1.08002 * 126.06850 * 0.02562 * 15 14 13 42 42 H 1.08003 * 126.07024 * 180.26845 * 16 15 14 43 43 H 1.09004 * 109.47078 * 4.71821 * 18 17 16 44 44 H 1.08993 * 109.47364 * 244.71592 * 18 17 16 45 45 H 0.97000 * 120.00236 * 0.27947 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9509 -2.5094 0.5040 8 7 2.0671 -2.6653 2.4172 9 8 1.6872 -4.0199 2.5776 10 6 2.1980 -4.6304 3.7644 11 6 1.7335 -6.0623 3.8327 12 8 1.0334 -6.5155 2.9519 13 7 2.0960 -6.8395 4.8724 14 6 1.6636 -8.1712 4.9362 15 6 0.8542 -8.8217 3.9911 16 6 0.6677 -10.0939 4.4101 17 7 1.3243 -10.2451 5.5796 18 6 1.3831 -11.4697 6.3815 19 6 2.8230 -11.8448 6.6209 20 1 3.6150 -11.2319 6.2164 21 6 3.1293 -12.9701 7.3561 22 7 2.1648 -13.7134 7.8531 23 14 4.9140 -13.4347 7.6534 24 1 4.9737 -14.6727 8.4712 25 1 5.5881 -13.6687 6.3509 26 1 5.5990 -12.3318 8.3741 27 7 1.9451 -9.0282 5.8892 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6768 -1.7489 -1.2492 35 1 1.6768 -0.2074 -2.1392 36 1 3.1301 -0.7216 -1.2489 37 1 2.6267 -2.2365 3.0834 38 1 1.8337 -4.0886 4.6373 39 1 3.2875 -4.6018 3.7476 40 1 2.6556 -6.4770 5.5770 41 1 0.4556 -8.3850 3.0873 42 1 0.0934 -10.8535 3.9005 43 1 0.8811 -12.2773 5.8488 44 1 0.8876 -11.3020 7.3377 45 1 1.2380 -13.4722 7.6990 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147440068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:01 Heat of formation + Delta-G solvation = -16.741964 kcal Electronic energy + Delta-G solvation = -28292.331096 eV Core-core repulsion = 23929.269413 eV Total energy + Delta-G solvation = -4363.061683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.07702 -40.89139 -39.65307 -38.24762 -36.74261 -35.02063 -34.64704 -33.75860 -32.52224 -31.08191 -29.49195 -28.40590 -27.83719 -27.76443 -26.13846 -23.27995 -23.16427 -21.99199 -20.81115 -20.42301 -19.76268 -18.84577 -18.42138 -17.23825 -17.14770 -16.93606 -16.72117 -16.37207 -16.23793 -15.47943 -15.07326 -14.88487 -14.59550 -14.34725 -13.99555 -13.95436 -13.81156 -13.35314 -13.18046 -12.94069 -12.72413 -12.52807 -12.34455 -12.33619 -12.32106 -12.07224 -11.88559 -11.73104 -11.57063 -11.21499 -10.86300 -10.79176 -10.59468 -10.43333 -10.19404 -10.19027 -9.80120 -9.49201 -9.05884 -8.61924 -8.31164 -7.63227 -6.61865 -4.36332 0.59020 2.03522 2.41625 2.47823 2.73897 3.18198 3.35391 3.36614 3.51717 3.55594 3.67592 3.96952 4.27173 4.32484 4.34738 4.38551 4.46451 4.49963 4.55672 5.04828 5.09341 5.11818 5.12831 5.27848 5.35711 5.36644 5.45637 5.56891 5.60481 5.83883 5.91798 5.96806 6.02906 6.26724 6.33054 6.42151 6.52792 6.69435 6.76856 7.16646 7.35197 7.62799 7.75817 7.96284 8.02894 8.29195 8.44303 8.56799 9.31975 10.75783 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.033140 B = 0.001561 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.696447 B =17937.346596 C =18341.759929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.139 3.861 3 C -0.140 4.140 4 C -0.187 4.187 5 O -0.359 6.359 6 C 0.669 3.331 7 O -0.542 6.542 8 N -0.584 5.584 9 O -0.085 6.085 10 C 0.014 3.986 11 C 0.529 3.471 12 O -0.489 6.489 13 N -0.623 5.623 14 C 0.258 3.742 15 C -0.284 4.284 16 C 0.053 3.947 17 N -0.315 5.315 18 C 0.249 3.751 19 C -0.610 4.610 20 H 0.063 0.937 21 C 0.023 3.977 22 N -0.904 5.904 23 Si 1.077 2.923 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.285 1.285 27 N -0.298 5.298 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.415 0.585 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.414 0.586 41 H 0.162 0.838 42 H 0.170 0.830 43 H 0.047 0.953 44 H 0.036 0.964 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.597 29.879 -11.910 32.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.103 3.897 3 C -0.197 4.197 4 C -0.244 4.244 5 O -0.274 6.274 6 C 0.422 3.578 7 O -0.427 6.427 8 N -0.292 5.292 9 O -0.089 6.089 10 C -0.067 4.067 11 C 0.311 3.689 12 O -0.359 6.359 13 N -0.273 5.273 14 C 0.005 3.995 15 C -0.316 4.316 16 C -0.096 4.096 17 N -0.097 5.097 18 C 0.131 3.869 19 C -0.648 4.648 20 H 0.082 0.918 21 C -0.181 4.181 22 N -0.539 5.539 23 Si 0.904 3.096 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.212 1.212 27 N -0.129 5.129 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.256 0.744 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.249 0.751 41 H 0.180 0.820 42 H 0.187 0.813 43 H 0.065 0.935 44 H 0.053 0.947 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.168 27.862 -11.292 30.086 hybrid contribution -0.735 1.499 -0.515 1.747 sum 0.432 29.362 -11.807 31.649 Atomic orbital electron populations 1.22553 0.93680 1.05419 1.02741 1.22196 0.94635 0.91324 0.81570 1.21879 1.02369 0.92139 1.03357 1.22553 1.01728 1.03730 0.96389 1.86272 1.71833 1.22057 1.47262 1.17208 0.79152 0.80539 0.80902 1.90972 1.39636 1.69888 1.42220 1.45307 1.56522 1.02226 1.25153 1.90796 1.71294 1.05667 1.41125 1.22686 1.01320 0.92518 0.90161 1.19493 0.81305 0.86103 0.81995 1.90758 1.34958 1.73206 1.37020 1.42060 1.51957 1.08468 1.24784 1.18977 0.99404 0.84890 0.96232 1.21556 1.11072 0.93894 1.05029 1.22586 0.99289 0.98227 0.89543 1.48814 1.34858 1.09111 1.16884 1.19793 1.00167 0.76747 0.90236 1.22098 0.90710 1.13318 1.38667 0.91823 1.25928 1.06827 0.92621 0.92756 1.70854 1.00828 1.39456 1.42748 0.83414 0.73122 0.76414 0.76651 1.20492 1.21226 1.21154 1.77348 1.21762 0.91583 1.22200 0.91969 0.90835 0.89164 0.91317 0.89823 0.91329 0.89166 0.90828 0.91957 0.74430 0.87985 0.87941 0.75073 0.82043 0.81307 0.93505 0.94674 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.41 8.37 37.16 0.31 -1.10 16 2 C 0.14 1.02 1.13 -90.62 -0.10 0.92 16 3 C -0.14 -0.63 8.85 37.16 0.33 -0.30 16 4 C -0.19 -1.42 8.37 37.16 0.31 -1.11 16 5 O -0.36 -3.16 9.94 -40.32 -0.40 -3.56 16 6 C 0.67 7.46 8.20 54.05 0.44 7.91 16 7 O -0.54 -7.94 12.29 -25.55 -0.31 -8.26 16 8 N -0.58 -5.26 6.39 27.59 0.18 -5.08 16 9 O -0.08 -1.01 10.64 -40.34 -0.43 -1.43 16 10 C 0.01 0.11 6.71 36.00 0.24 0.35 16 11 C 0.53 6.99 7.87 -10.99 -0.09 6.91 16 12 O -0.49 -8.68 13.63 -14.36 -0.20 -8.88 16 13 N -0.62 -8.60 5.45 -11.13 -0.06 -8.66 16 14 C 0.26 4.96 8.11 -154.39 -1.25 3.71 16 15 C -0.28 -5.55 9.61 -39.83 -0.38 -5.93 16 16 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 17 N -0.31 -7.21 3.67 -62.56 -0.23 -7.44 16 18 C 0.25 6.19 5.57 -5.19 -0.03 6.16 16 19 C -0.61 -16.91 9.24 -34.44 -0.32 -17.23 16 20 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 21 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 22 N -0.90 -26.02 13.65 55.43 0.76 -25.26 16 23 Si 1.08 24.56 29.90 -169.99 -5.08 19.48 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.29 -6.28 7.11 56.52 0.40 -5.87 16 26 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 27 N -0.30 -6.67 12.42 31.44 0.39 -6.28 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.09 0.94 5.88 -51.93 -0.31 0.64 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.09 0.95 5.88 -51.93 -0.31 0.64 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.41 1.95 8.65 -40.82 -0.35 1.59 16 38 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.41 4.18 8.82 -40.82 -0.36 3.82 16 41 H 0.16 3.10 5.92 -52.49 -0.31 2.79 16 42 H 0.17 2.72 8.06 -52.48 -0.42 2.29 16 43 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 44 H 0.04 0.91 8.00 -51.93 -0.42 0.49 16 45 H 0.27 7.52 7.22 -40.82 -0.29 7.23 16 LS Contribution 385.70 15.07 5.81 5.81 Total: -1.00 -37.64 385.70 -6.60 -44.24 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.19 Total: 3.62 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -0.83 Total: 1.70 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 1.03 Total: -52.72 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -1.34 Total: -22.13 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.08 Total: 19.48 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.64 -6.60 -44.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147440068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.493 kcal (2) G-P(sol) polarization free energy of solvation -37.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds