Wall clock time and date at job start Sat Apr 11 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47052 * 2 1 4 4 C 1.53002 * 109.47599 * 239.99910 * 2 1 3 5 5 O 1.45203 * 109.47132 * 119.99722 * 2 1 3 6 6 C 1.34640 * 116.99690 * 60.00253 * 5 2 1 7 7 O 1.21511 * 119.99997 * 359.97438 * 6 5 2 8 8 N 1.34770 * 119.99759 * 180.02562 * 6 5 2 9 9 O 1.41601 * 120.00035 * 180.02562 * 8 6 5 10 10 C 1.42898 * 114.00622 * 179.97438 * 9 8 6 11 11 C 1.50696 * 109.47403 * 179.97438 * 10 9 8 12 12 O 1.21290 * 120.00012 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99736 * 179.97438 * 11 10 9 14 14 C 1.40159 * 119.99983 * 179.97438 * 13 11 10 15 15 C 1.40409 * 125.97033 * 0.02562 * 14 13 11 16 16 C 1.35241 * 107.86602 * 179.73843 * 15 14 13 17 17 N 1.34966 * 107.86079 * 0.39163 * 16 15 14 18 18 C 1.46500 * 125.97782 * 179.87198 * 17 16 15 19 19 C 1.50706 * 109.47299 * 124.71059 * 18 17 16 20 20 H 1.07998 * 119.99503 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00434 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 359.72891 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72558 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72681 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72491 * 23 21 19 27 27 N 1.31219 * 125.97718 * 179.97438 * 14 13 11 28 28 H 1.08997 * 109.47681 * 300.00553 * 1 2 3 29 29 H 1.09008 * 109.46740 * 60.00172 * 1 2 3 30 30 H 1.08995 * 109.47039 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46973 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.47386 * 299.99569 * 3 2 1 33 33 H 1.09005 * 109.47050 * 60.00045 * 3 2 1 34 34 H 1.08995 * 109.47149 * 300.00207 * 4 2 1 35 35 H 1.08996 * 109.46752 * 59.99954 * 4 2 1 36 36 H 1.08997 * 109.46890 * 180.02562 * 4 2 1 37 37 H 0.97000 * 120.00476 * 359.97438 * 8 6 5 38 38 H 1.09001 * 109.46875 * 59.99586 * 10 9 8 39 39 H 1.09006 * 109.46878 * 300.00274 * 10 9 8 40 40 H 0.97003 * 120.00166 * 0.02562 * 13 11 10 41 41 H 1.08002 * 126.06850 * 0.02562 * 15 14 13 42 42 H 1.08003 * 126.07024 * 180.26845 * 16 15 14 43 43 H 1.09004 * 109.47078 * 4.71821 * 18 17 16 44 44 H 1.08993 * 109.47364 * 244.71592 * 18 17 16 45 45 H 0.97000 * 120.00236 * 0.27947 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9509 -2.5094 0.5040 8 7 2.0671 -2.6653 2.4172 9 8 1.6872 -4.0199 2.5776 10 6 2.1980 -4.6304 3.7644 11 6 1.7335 -6.0623 3.8327 12 8 1.0334 -6.5155 2.9519 13 7 2.0960 -6.8395 4.8724 14 6 1.6636 -8.1712 4.9362 15 6 0.8542 -8.8217 3.9911 16 6 0.6677 -10.0939 4.4101 17 7 1.3243 -10.2451 5.5796 18 6 1.3831 -11.4697 6.3815 19 6 2.8230 -11.8448 6.6209 20 1 3.6150 -11.2319 6.2164 21 6 3.1293 -12.9701 7.3561 22 7 2.1648 -13.7134 7.8531 23 14 4.9140 -13.4347 7.6534 24 1 4.9737 -14.6727 8.4712 25 1 5.5881 -13.6687 6.3509 26 1 5.5990 -12.3318 8.3741 27 7 1.9451 -9.0282 5.8892 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6768 -1.7489 -1.2492 35 1 1.6768 -0.2074 -2.1392 36 1 3.1301 -0.7216 -1.2489 37 1 2.6267 -2.2365 3.0834 38 1 1.8337 -4.0886 4.6373 39 1 3.2875 -4.6018 3.7476 40 1 2.6556 -6.4770 5.5770 41 1 0.4556 -8.3850 3.0873 42 1 0.0934 -10.8535 3.9005 43 1 0.8811 -12.2773 5.8488 44 1 0.8876 -11.3020 7.3377 45 1 1.2380 -13.4722 7.6990 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147440068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:00 Heat of formation + Delta-G solvation = -43.959923 kcal Electronic energy + Delta-G solvation = -28293.511355 eV Core-core repulsion = 23929.269413 eV Total energy + Delta-G solvation = -4364.241942 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.37163 -41.81105 -40.85983 -39.06092 -37.57006 -36.48802 -35.60196 -35.31178 -33.33752 -32.73363 -31.09151 -29.45255 -28.35220 -28.26485 -27.87645 -25.12239 -23.93008 -23.25567 -22.21310 -21.42243 -20.98601 -19.60076 -19.24640 -19.21568 -18.42516 -17.77262 -17.70804 -17.30922 -17.09056 -16.87013 -16.22022 -15.95415 -15.66289 -15.51471 -15.37593 -15.18198 -14.95374 -14.58134 -14.20894 -14.06907 -13.95720 -13.71779 -13.33741 -13.25072 -13.21501 -12.91594 -12.86617 -12.69070 -12.61137 -12.36077 -12.26267 -12.09582 -11.95385 -11.73666 -11.43133 -11.24496 -11.06283 -11.02093 -10.69762 -10.25546 -9.89821 -9.27436 -8.78627 -6.56696 -0.18721 0.77066 1.21416 1.29372 1.51827 1.57939 1.65235 1.79510 2.06911 2.08222 2.48615 2.61137 3.01019 3.26330 3.50155 3.74710 3.80011 3.84603 3.94804 4.00069 4.05327 4.10689 4.49637 4.53801 4.64106 4.64299 4.72421 4.76238 4.78211 4.79545 4.86863 4.91459 5.02100 5.13425 5.27606 5.30805 5.32806 5.53640 5.63859 5.75532 5.89038 6.07009 6.14199 6.24065 6.39514 6.80936 6.96937 7.19252 7.28439 8.58041 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.033140 B = 0.001561 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.696447 B =17937.346596 C =18341.759929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.128 3.872 3 C -0.134 4.134 4 C -0.184 4.184 5 O -0.350 6.350 6 C 0.664 3.336 7 O -0.583 6.583 8 N -0.564 5.564 9 O -0.126 6.126 10 C 0.023 3.977 11 C 0.529 3.471 12 O -0.538 6.538 13 N -0.611 5.611 14 C 0.269 3.731 15 C -0.294 4.294 16 C 0.056 3.944 17 N -0.341 5.341 18 C 0.259 3.741 19 C -0.623 4.623 20 H 0.047 0.953 21 C -0.018 4.018 22 N -0.923 5.923 23 Si 1.120 2.880 24 H -0.276 1.276 25 H -0.272 1.272 26 H -0.273 1.273 27 N -0.338 5.338 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.436 0.564 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.432 0.568 41 H 0.166 0.834 42 H 0.201 0.799 43 H 0.053 0.947 44 H 0.019 0.981 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.155 32.488 -12.052 34.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.092 3.908 3 C -0.191 4.191 4 C -0.242 4.242 5 O -0.265 6.265 6 C 0.417 3.583 7 O -0.472 6.472 8 N -0.275 5.275 9 O -0.131 6.131 10 C -0.057 4.057 11 C 0.314 3.686 12 O -0.412 6.412 13 N -0.264 5.264 14 C 0.014 3.986 15 C -0.325 4.325 16 C -0.092 4.092 17 N -0.123 5.123 18 C 0.139 3.861 19 C -0.661 4.661 20 H 0.065 0.935 21 C -0.218 4.218 22 N -0.559 5.559 23 Si 0.941 3.059 24 H -0.201 1.201 25 H -0.197 1.197 26 H -0.199 1.199 27 N -0.168 5.168 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.281 0.719 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.272 0.728 41 H 0.183 0.817 42 H 0.217 0.783 43 H 0.071 0.929 44 H 0.036 0.964 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.753 30.539 -11.398 32.713 hybrid contribution -1.280 0.838 -0.565 1.630 sum 1.474 31.377 -11.963 33.613 Atomic orbital electron populations 1.22519 0.94057 1.03560 1.04013 1.22545 0.94594 0.92716 0.80917 1.21905 1.02738 0.89807 1.04650 1.22520 1.02004 1.02046 0.97595 1.86308 1.71536 1.20725 1.47968 1.17493 0.78787 0.81097 0.80889 1.90965 1.41511 1.70857 1.43846 1.45113 1.56159 1.01120 1.25100 1.90762 1.72302 1.07061 1.42968 1.22820 1.03558 0.88717 0.90559 1.20480 0.79812 0.87837 0.80478 1.90736 1.37169 1.74590 1.38726 1.42154 1.51946 1.06429 1.25834 1.19329 0.97826 0.86593 0.94831 1.21734 1.11423 0.94018 1.05299 1.23164 0.98376 0.99203 0.88428 1.48588 1.36815 1.08975 1.17953 1.19447 0.98619 0.77963 0.90027 1.22294 0.91743 1.13299 1.38757 0.93461 1.27282 1.09975 0.92489 0.92062 1.70949 1.00906 1.40164 1.43884 0.82871 0.69071 0.76591 0.77355 1.20094 1.19734 1.19865 1.77264 1.23586 0.92031 1.23952 0.91374 0.88905 0.92481 0.90732 0.87853 0.90711 0.92492 0.88894 0.91405 0.71871 0.83612 0.83733 0.72821 0.81716 0.78265 0.92905 0.96363 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.66 8.37 71.98 0.60 -2.05 16 2 C 0.13 1.71 1.13 -10.79 -0.01 1.70 16 3 C -0.13 -0.83 8.85 71.98 0.64 -0.19 16 4 C -0.18 -2.68 8.37 71.98 0.60 -2.08 16 5 O -0.35 -5.72 9.94 -55.49 -0.55 -6.27 16 6 C 0.66 14.44 8.20 129.79 1.06 15.51 16 7 O -0.58 -17.66 12.29 25.80 0.32 -17.34 16 8 N -0.56 -9.10 6.39 -297.02 -1.90 -10.99 16 9 O -0.13 -2.77 10.64 -11.18 -0.12 -2.89 16 10 C 0.02 0.29 6.71 71.23 0.48 0.77 16 11 C 0.53 13.12 7.87 87.66 0.69 13.81 16 12 O -0.54 -19.03 13.63 15.97 0.22 -18.81 16 13 N -0.61 -15.91 5.45 -307.52 -1.68 -17.59 16 14 C 0.27 10.25 8.11 133.32 1.08 11.33 16 15 C -0.29 -11.44 9.61 22.11 0.21 -11.23 16 16 C 0.06 2.22 11.44 83.52 0.96 3.18 16 17 N -0.34 -15.84 3.67 -351.83 -1.29 -17.13 16 18 C 0.26 13.17 5.57 85.64 0.48 13.65 16 19 C -0.62 -35.02 9.24 25.60 0.24 -34.78 16 20 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 21 C -0.02 -1.01 5.46 84.65 0.46 -0.55 16 22 N -0.92 -53.56 13.65 21.45 0.29 -53.27 16 23 Si 1.12 48.96 29.90 68.60 2.05 51.02 16 24 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 27 N -0.34 -15.20 12.42 -54.45 -0.68 -15.88 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 29 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.06 1.24 5.88 -2.39 -0.01 1.23 16 31 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 34 H 0.06 1.25 5.88 -2.39 -0.01 1.23 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.44 2.75 8.65 -92.71 -0.80 1.94 16 38 H 0.15 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.15 0.70 8.14 -2.38 -0.02 0.68 16 40 H 0.43 7.71 8.82 -92.71 -0.82 6.89 16 41 H 0.17 6.37 5.92 -2.91 -0.02 6.35 16 42 H 0.20 6.26 8.06 -2.91 -0.02 6.24 16 43 H 0.05 2.59 7.94 -2.39 -0.02 2.57 16 44 H 0.02 0.99 8.00 -2.39 -0.02 0.97 16 45 H 0.26 14.97 7.22 -92.71 -0.67 14.30 16 Total: -1.00 -85.73 385.70 3.68 -82.05 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -0.47 Total: 18.06 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 7.49 Total: 9.05 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -5.25 Total: -114.86 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -0.14 Total: -45.32 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 2.05 Total: 51.02 kcal Total: -85.73 3.68 -82.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147440068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.087 kcal (2) G-P(sol) polarization free energy of solvation -85.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds