Wall clock time and date at job start Sat Apr 11 2020 06:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35461 * 126.43635 * 2 1 4 4 Cl 1.73601 * 127.23795 * 359.95329 * 3 2 1 5 5 C 1.41553 * 105.52530 * 179.97438 * 3 2 1 6 6 C 1.47656 * 126.46216 * 179.97438 * 5 3 2 7 7 O 1.21576 * 120.00065 * 359.97438 * 6 5 3 8 8 N 1.34778 * 120.00299 * 179.97438 * 6 5 3 9 9 C 1.46498 * 120.00537 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47203 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.46758 * 175.02074 * 10 9 8 12 12 C 1.53001 * 115.55252 * 278.02956 * 11 10 9 13 13 N 1.46506 * 109.47096 * 303.90780 * 12 11 10 14 14 C 1.36935 * 120.00030 * 175.59333 * 13 12 11 15 15 H 1.08005 * 119.99746 * 359.97438 * 14 13 12 16 16 C 1.38808 * 120.00067 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00226 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00149 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46765 * 60.00204 * 18 16 14 20 20 H 1.48496 * 109.47324 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47145 * 300.00505 * 18 16 14 22 22 C 1.53005 * 117.49495 * 132.32985 * 11 10 9 23 23 C 1.52999 * 117.50138 * 63.70597 * 11 10 9 24 24 N 1.31828 * 107.07502 * 0.22060 * 5 3 2 25 25 N 1.28476 * 110.13385 * 359.62230 * 24 5 3 26 26 C 1.46505 * 124.93135 * 180.19531 * 25 24 5 27 27 H 1.09002 * 109.47045 * 89.97754 * 1 2 3 28 28 H 1.08995 * 109.47397 * 209.98160 * 1 2 3 29 29 H 1.09001 * 109.47071 * 329.98383 * 1 2 3 30 30 H 0.97006 * 119.99314 * 0.27567 * 8 6 5 31 31 H 1.08999 * 109.46439 * 299.99779 * 9 8 6 32 32 H 1.08998 * 109.47088 * 59.99559 * 9 8 6 33 33 H 1.08999 * 109.47157 * 295.02317 * 10 9 8 34 34 H 1.09002 * 109.46877 * 55.01956 * 10 9 8 35 35 H 1.09003 * 109.46684 * 63.89899 * 12 11 10 36 36 H 1.08999 * 109.47311 * 183.90121 * 12 11 10 37 37 H 0.96994 * 119.99767 * 355.58389 * 13 12 11 38 38 H 0.97001 * 120.00519 * 179.97438 * 17 16 14 39 39 H 1.08990 * 117.49862 * 359.97438 * 22 11 10 40 40 H 1.08998 * 117.50104 * 145.02200 * 22 11 10 41 41 H 1.08999 * 117.50020 * 214.97946 * 23 11 10 42 42 H 1.09007 * 117.49438 * 359.97438 * 23 11 10 43 43 H 1.08999 * 109.46464 * 270.22910 * 26 25 24 44 44 H 1.08997 * 109.47219 * 30.22328 * 26 25 24 45 45 H 1.08998 * 109.46889 * 150.23256 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0898 0.0000 4 17 1.8235 2.7558 -0.0011 5 6 3.6338 0.5846 0.0006 6 6 4.8774 1.3807 0.0003 7 8 4.8217 2.5952 -0.0010 8 7 6.0743 0.7611 0.0015 9 6 7.3081 1.5509 0.0018 10 6 8.5154 0.6109 0.0038 11 6 9.8007 1.4315 -0.1211 12 6 10.1793 1.8526 -1.5424 13 7 10.2783 0.6644 -2.3938 14 6 10.5184 0.8011 -3.7349 15 1 10.6344 1.7849 -4.1652 16 6 10.6128 -0.3247 -4.5415 17 7 10.4720 -1.5237 -4.0170 18 14 10.9396 -0.1382 -6.3712 19 1 12.2355 0.5581 -6.5740 20 1 10.9941 -1.4806 -7.0037 21 1 9.8485 0.6564 -6.9904 22 6 10.9402 1.1113 0.8485 23 6 10.1334 2.4006 1.0151 24 7 3.5456 -0.7307 -0.0039 25 7 2.3125 -1.0913 0.0007 26 6 1.8444 -2.4796 0.0018 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3634 -0.8901 0.5135 29 1 -0.3633 0.8898 0.5141 30 1 6.1187 -0.2080 -0.0015 31 1 7.3376 2.1788 -0.8887 32 1 7.3365 2.1801 0.8913 33 1 8.5342 0.0457 0.9356 34 1 8.4408 -0.0780 -0.8376 35 1 9.4150 2.5209 -1.9391 36 1 11.1394 2.3682 -1.5251 37 1 10.1739 -0.2191 -2.0073 38 1 10.5375 -2.3104 -4.5807 39 1 10.7740 0.3165 1.5755 40 1 11.9598 1.2006 0.4738 41 1 10.6222 3.3381 0.7500 42 1 9.4363 2.4540 1.8514 43 1 1.7283 -2.8246 -1.0256 44 1 2.5718 -3.1078 0.5160 45 1 0.8851 -2.5391 0.5157 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167345297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:24 Heat of formation + Delta-G solvation = 68.449459 kcal Electronic energy + Delta-G solvation = -26692.276693 eV Core-core repulsion = 22773.618352 eV Total energy + Delta-G solvation = -3918.658341 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.00967 -39.34631 -38.14232 -36.63314 -34.69200 -33.93328 -33.85623 -32.84182 -30.75204 -30.01624 -27.86006 -27.28708 -25.90315 -24.07587 -22.73006 -22.47603 -21.64501 -21.27950 -19.96462 -18.43035 -17.54097 -17.05169 -16.87029 -16.65386 -15.73461 -15.40325 -15.08533 -14.91756 -14.36390 -14.19332 -14.08770 -13.80174 -13.61735 -13.41141 -13.20753 -13.06440 -12.90230 -12.72695 -12.59489 -12.26281 -11.98885 -11.79901 -11.62073 -11.35960 -11.07055 -10.89035 -10.79580 -10.78254 -10.53415 -10.14504 -9.92043 -9.87370 -9.58512 -9.45684 -9.26927 -8.96129 -8.83090 -8.77462 -6.85178 -5.71645 -2.99069 1.30899 1.60193 1.68384 2.44657 3.21917 3.39030 3.47839 3.51687 3.52944 4.03878 4.11599 4.15141 4.47674 4.58087 4.65031 4.65624 4.90119 5.03187 5.03913 5.11160 5.17038 5.22812 5.29873 5.36358 5.41091 5.59881 5.65271 5.76003 5.77282 5.86152 5.97168 6.22753 6.25338 6.27576 6.30257 6.48974 6.51628 6.56471 6.69508 6.83269 6.89863 7.39883 7.70712 7.74857 8.30479 8.47693 9.59142 10.17799 10.53507 11.51263 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010347 B = 0.002683 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.552083 B =10434.830560 C =11626.065295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.023 3.977 3 C -0.104 4.104 4 Cl -0.009 7.009 5 C 0.005 3.995 6 C 0.598 3.402 7 O -0.519 6.519 8 N -0.712 5.712 9 C 0.127 3.873 10 C -0.092 4.092 11 C -0.117 4.117 12 C 0.187 3.813 13 N -0.727 5.727 14 C -0.236 4.236 15 H 0.069 0.931 16 C -0.014 4.014 17 N -0.934 5.934 18 Si 0.906 3.094 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.286 1.286 22 C -0.167 4.167 23 C -0.177 4.177 24 N -0.245 5.245 25 N -0.278 5.278 26 C 0.086 3.914 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.406 0.594 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.026 0.974 36 H 0.018 0.982 37 H 0.385 0.615 38 H 0.254 0.746 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.193 -0.847 14.122 25.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 C -0.141 4.141 4 Cl 0.020 6.980 5 C -0.157 4.157 6 C 0.381 3.619 7 O -0.393 6.393 8 N -0.363 5.363 9 C 0.004 3.996 10 C -0.130 4.130 11 C -0.118 4.118 12 C 0.060 3.940 13 N -0.372 5.372 14 C -0.368 4.368 15 H 0.087 0.913 16 C -0.210 4.210 17 N -0.583 5.583 18 Si 0.737 3.263 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.213 1.213 22 C -0.204 4.204 23 C -0.215 4.215 24 N -0.080 5.080 25 N -0.067 5.067 26 C -0.054 4.054 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.241 0.759 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.044 0.956 36 H 0.035 0.965 37 H 0.219 0.781 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.120 0.880 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.606 -0.849 13.949 24.897 hybrid contribution -0.271 -0.062 -0.988 1.027 sum -20.877 -0.911 12.961 24.590 Atomic orbital electron populations 1.20404 0.85796 1.04236 1.03845 1.21102 0.95436 0.85769 1.07913 1.20506 0.92031 0.87742 1.13840 1.98355 1.90791 1.11754 1.97106 1.21900 0.94374 0.89430 1.09964 1.16731 0.81512 0.86450 0.77218 1.90834 1.86504 1.12382 1.49590 1.45864 1.05309 1.11014 1.74099 1.21394 0.81563 0.94049 1.02580 1.21265 0.91317 0.97508 1.02908 1.21560 0.95487 1.01730 0.93061 1.20183 0.97026 0.90714 0.86084 1.42297 1.86673 1.03230 1.04953 1.19194 1.40517 0.92666 0.84382 0.91324 1.24701 1.03050 0.95261 0.97972 1.69647 1.57270 0.96760 1.34644 0.86286 0.78078 0.76425 0.85525 1.21337 1.21753 1.21314 1.22992 0.96841 0.98516 1.02025 1.22967 1.03766 0.94450 1.00326 1.73659 1.01818 1.13751 1.18798 1.45287 1.02610 1.07456 1.51347 1.22257 1.01788 0.76336 1.05000 0.89738 0.90649 0.89244 0.75911 0.90688 0.91582 0.91968 0.89165 0.95583 0.96473 0.78138 0.93594 0.89343 0.88730 0.88948 0.89182 0.89179 0.87970 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 9.99 36.01 0.36 -0.08 16 2 C 0.02 0.22 6.94 -81.90 -0.57 -0.35 16 3 C -0.10 -1.35 6.79 -39.31 -0.27 -1.62 16 4 Cl -0.01 -0.11 27.92 -51.86 -1.45 -1.56 16 5 C 0.00 0.07 7.13 -82.76 -0.59 -0.52 16 6 C 0.60 9.85 7.82 -12.41 -0.10 9.75 16 7 O -0.52 -9.82 15.87 5.30 0.08 -9.74 16 8 N -0.71 -10.72 5.55 -61.31 -0.34 -11.06 16 9 C 0.13 1.97 5.49 -4.04 -0.02 1.94 16 10 C -0.09 -1.44 5.20 -26.73 -0.14 -1.58 16 11 C -0.12 -1.94 1.65 -154.51 -0.25 -2.20 16 12 C 0.19 3.89 6.15 -4.04 -0.02 3.87 16 13 N -0.73 -18.53 5.23 -59.90 -0.31 -18.85 16 14 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 15 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 17 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 18 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 C -0.17 -2.48 9.87 -26.73 -0.26 -2.75 16 23 C -0.18 -2.44 9.58 -26.73 -0.26 -2.70 16 24 N -0.24 -3.14 11.66 33.42 0.39 -2.75 16 25 N -0.28 -2.66 3.72 -63.68 -0.24 -2.90 16 26 C 0.09 0.37 11.12 59.85 0.67 1.04 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.20 7.02 -51.93 -0.36 -0.16 16 29 H 0.09 0.46 8.03 -51.93 -0.42 0.04 16 30 H 0.41 5.57 8.19 -40.82 -0.33 5.23 16 31 H 0.07 1.33 7.96 -51.93 -0.41 0.92 16 32 H 0.07 0.98 7.72 -51.93 -0.40 0.57 16 33 H 0.06 0.85 7.93 -51.93 -0.41 0.44 16 34 H 0.09 1.66 6.94 -51.93 -0.36 1.30 16 35 H 0.03 0.56 7.96 -51.93 -0.41 0.15 16 36 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 37 H 0.38 10.21 6.80 -40.82 -0.28 9.93 16 38 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.09 1.19 8.07 -51.93 -0.42 0.77 16 40 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.09 1.11 7.90 -51.93 -0.41 0.70 16 43 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.10 0.14 6.98 -51.93 -0.36 -0.22 16 LS Contribution 393.55 15.07 5.93 5.93 Total: -1.00 -35.20 393.55 -8.60 -43.80 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -6.67 Total: 9.51 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -1.70 Total: -2.57 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: 0.22 Total: -63.16 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.08 Total: -9.74 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.45 Total: -1.56 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.20 -8.60 -43.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167345297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.247 kcal (2) G-P(sol) polarization free energy of solvation -35.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds