Wall clock time and date at job start Sat Apr 11 2020 06:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35461 * 126.43635 * 2 1 4 4 Cl 1.73601 * 127.23795 * 359.95329 * 3 2 1 5 5 C 1.41553 * 105.52530 * 179.97438 * 3 2 1 6 6 C 1.47656 * 126.46216 * 179.97438 * 5 3 2 7 7 O 1.21576 * 120.00065 * 359.97438 * 6 5 3 8 8 N 1.34778 * 120.00299 * 179.97438 * 6 5 3 9 9 C 1.46498 * 120.00537 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47203 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.46758 * 175.02074 * 10 9 8 12 12 C 1.53001 * 115.55252 * 278.02956 * 11 10 9 13 13 N 1.46506 * 109.47096 * 303.90780 * 12 11 10 14 14 C 1.36935 * 120.00030 * 175.59333 * 13 12 11 15 15 H 1.08005 * 119.99746 * 359.97438 * 14 13 12 16 16 C 1.38808 * 120.00067 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00226 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00149 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46765 * 60.00204 * 18 16 14 20 20 H 1.48496 * 109.47324 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47145 * 300.00505 * 18 16 14 22 22 C 1.53005 * 117.49495 * 132.32985 * 11 10 9 23 23 C 1.52999 * 117.50138 * 63.70597 * 11 10 9 24 24 N 1.31828 * 107.07502 * 0.22060 * 5 3 2 25 25 N 1.28476 * 110.13385 * 359.62230 * 24 5 3 26 26 C 1.46505 * 124.93135 * 180.19531 * 25 24 5 27 27 H 1.09002 * 109.47045 * 89.97754 * 1 2 3 28 28 H 1.08995 * 109.47397 * 209.98160 * 1 2 3 29 29 H 1.09001 * 109.47071 * 329.98383 * 1 2 3 30 30 H 0.97006 * 119.99314 * 0.27567 * 8 6 5 31 31 H 1.08999 * 109.46439 * 299.99779 * 9 8 6 32 32 H 1.08998 * 109.47088 * 59.99559 * 9 8 6 33 33 H 1.08999 * 109.47157 * 295.02317 * 10 9 8 34 34 H 1.09002 * 109.46877 * 55.01956 * 10 9 8 35 35 H 1.09003 * 109.46684 * 63.89899 * 12 11 10 36 36 H 1.08999 * 109.47311 * 183.90121 * 12 11 10 37 37 H 0.96994 * 119.99767 * 355.58389 * 13 12 11 38 38 H 0.97001 * 120.00519 * 179.97438 * 17 16 14 39 39 H 1.08990 * 117.49862 * 359.97438 * 22 11 10 40 40 H 1.08998 * 117.50104 * 145.02200 * 22 11 10 41 41 H 1.08999 * 117.50020 * 214.97946 * 23 11 10 42 42 H 1.09007 * 117.49438 * 359.97438 * 23 11 10 43 43 H 1.08999 * 109.46464 * 270.22910 * 26 25 24 44 44 H 1.08997 * 109.47219 * 30.22328 * 26 25 24 45 45 H 1.08998 * 109.46889 * 150.23256 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0898 0.0000 4 17 1.8235 2.7558 -0.0011 5 6 3.6338 0.5846 0.0006 6 6 4.8774 1.3807 0.0003 7 8 4.8217 2.5952 -0.0010 8 7 6.0743 0.7611 0.0015 9 6 7.3081 1.5509 0.0018 10 6 8.5154 0.6109 0.0038 11 6 9.8007 1.4315 -0.1211 12 6 10.1793 1.8526 -1.5424 13 7 10.2783 0.6644 -2.3938 14 6 10.5184 0.8011 -3.7349 15 1 10.6344 1.7849 -4.1652 16 6 10.6128 -0.3247 -4.5415 17 7 10.4720 -1.5237 -4.0170 18 14 10.9396 -0.1382 -6.3712 19 1 12.2355 0.5581 -6.5740 20 1 10.9941 -1.4806 -7.0037 21 1 9.8485 0.6564 -6.9904 22 6 10.9402 1.1113 0.8485 23 6 10.1334 2.4006 1.0151 24 7 3.5456 -0.7307 -0.0039 25 7 2.3125 -1.0913 0.0007 26 6 1.8444 -2.4796 0.0018 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3634 -0.8901 0.5135 29 1 -0.3633 0.8898 0.5141 30 1 6.1187 -0.2080 -0.0015 31 1 7.3376 2.1788 -0.8887 32 1 7.3365 2.1801 0.8913 33 1 8.5342 0.0457 0.9356 34 1 8.4408 -0.0780 -0.8376 35 1 9.4150 2.5209 -1.9391 36 1 11.1394 2.3682 -1.5251 37 1 10.1739 -0.2191 -2.0073 38 1 10.5375 -2.3104 -4.5807 39 1 10.7740 0.3165 1.5755 40 1 11.9598 1.2006 0.4738 41 1 10.6222 3.3381 0.7500 42 1 9.4363 2.4540 1.8514 43 1 1.7283 -2.8246 -1.0256 44 1 2.5718 -3.1078 0.5160 45 1 0.8851 -2.5391 0.5157 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167345297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:23 Heat of formation + Delta-G solvation = 44.325704 kcal Electronic energy + Delta-G solvation = -26693.322777 eV Core-core repulsion = 22773.618352 eV Total energy + Delta-G solvation = -3919.704425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.84619 -40.60913 -39.47955 -37.56222 -36.10749 -35.74855 -34.64492 -33.52042 -32.78979 -31.25125 -28.57513 -28.03937 -27.68637 -25.18667 -24.61134 -23.67403 -22.82899 -22.17867 -21.05742 -19.86482 -19.02083 -18.42681 -17.66573 -17.64059 -16.98272 -16.77782 -16.53447 -16.05036 -15.81967 -15.57342 -15.22022 -14.97571 -14.77095 -14.48906 -14.22083 -14.15300 -13.91415 -13.72156 -13.51624 -13.16545 -13.10534 -13.01426 -12.83326 -12.76768 -12.57645 -12.49077 -12.27247 -12.15202 -11.93320 -11.88272 -11.75046 -11.18381 -11.07050 -10.90541 -10.53763 -10.35848 -10.05766 -9.78043 -8.96648 -7.94247 -5.21671 0.32772 0.74309 0.91182 1.45422 1.48494 1.54367 1.64043 2.09527 2.20795 2.54643 2.90609 3.25443 3.38600 3.50238 3.74437 3.84121 3.85505 3.98159 4.06988 4.08968 4.25638 4.31120 4.35138 4.40813 4.48703 4.61522 4.63438 4.70735 4.76359 4.84500 4.85471 4.94790 4.98505 5.06499 5.08755 5.18401 5.26939 5.35109 5.37467 5.38705 5.48900 5.64799 6.28090 6.34579 6.67734 7.08193 7.35126 8.11488 8.37486 9.28859 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010347 B = 0.002683 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.552083 B =10434.830560 C =11626.065295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.042 3.958 3 C -0.136 4.136 4 Cl -0.018 7.018 5 C -0.029 4.029 6 C 0.593 3.407 7 O -0.554 6.554 8 N -0.707 5.707 9 C 0.136 3.864 10 C -0.077 4.077 11 C -0.140 4.140 12 C 0.188 3.812 13 N -0.735 5.735 14 C -0.247 4.247 15 H 0.069 0.931 16 C -0.072 4.072 17 N -0.965 5.965 18 Si 0.970 3.030 19 H -0.278 1.278 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.162 4.162 23 C -0.150 4.150 24 N -0.258 5.258 25 N -0.268 5.268 26 C 0.071 3.929 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.412 0.588 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.015 0.985 36 H 0.016 0.984 37 H 0.377 0.623 38 H 0.251 0.749 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.113 0.887 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.760 -1.773 15.139 27.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.173 4.173 4 Cl 0.010 6.990 5 C -0.188 4.188 6 C 0.378 3.622 7 O -0.430 6.430 8 N -0.358 5.358 9 C 0.013 3.987 10 C -0.115 4.115 11 C -0.141 4.141 12 C 0.061 3.939 13 N -0.378 5.378 14 C -0.379 4.379 15 H 0.087 0.913 16 C -0.264 4.264 17 N -0.616 5.616 18 Si 0.799 3.201 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.199 4.199 23 C -0.188 4.188 24 N -0.095 5.095 25 N -0.058 5.058 26 C -0.066 4.066 27 H 0.117 0.883 28 H 0.128 0.872 29 H 0.109 0.891 30 H 0.248 0.752 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.033 0.967 36 H 0.034 0.966 37 H 0.210 0.790 38 H 0.060 0.940 39 H 0.126 0.874 40 H 0.103 0.897 41 H 0.117 0.883 42 H 0.132 0.868 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -22.163 -1.772 14.981 26.810 hybrid contribution 0.152 0.179 -1.281 1.303 sum -22.010 -1.593 13.700 25.975 Atomic orbital electron populations 1.20639 0.82339 1.06051 1.05252 1.21719 0.97181 0.84611 1.04888 1.20768 0.92171 0.88267 1.16125 1.98336 1.90694 1.12677 1.97276 1.21693 0.94158 0.90320 1.12674 1.17082 0.82363 0.86352 0.76434 1.90793 1.87131 1.13781 1.51302 1.45829 1.05024 1.11269 1.73666 1.21252 0.81859 0.93911 1.01685 1.21098 0.90866 0.96813 1.02751 1.21380 0.96790 1.04576 0.91397 1.20233 0.96428 0.89012 0.88190 1.42440 1.86456 1.04278 1.04661 1.19569 1.39638 0.92753 0.85951 0.91268 1.25489 1.03669 0.95046 1.02206 1.69796 1.58629 0.97247 1.35909 0.85268 0.78137 0.76256 0.80437 1.20439 1.21788 1.20826 1.23057 0.95672 0.99928 1.01273 1.23060 1.02898 0.94013 0.98791 1.73594 1.03766 1.12852 1.19260 1.45869 1.01649 1.09250 1.49031 1.22793 1.03620 0.73601 1.06615 0.88333 0.87182 0.89098 0.75207 0.93628 0.90339 0.89323 0.92420 0.96696 0.96629 0.79041 0.93995 0.87418 0.89747 0.88348 0.86848 0.87796 0.87441 0.84663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 9.99 71.24 0.71 0.10 16 2 C 0.04 0.74 6.94 41.33 0.29 1.02 16 3 C -0.14 -3.53 6.79 22.45 0.15 -3.37 16 4 Cl -0.02 -0.48 27.92 -2.72 -0.08 -0.56 16 5 C -0.03 -0.87 7.13 42.45 0.30 -0.56 16 6 C 0.59 20.31 7.82 86.73 0.68 20.98 16 7 O -0.55 -21.88 15.87 -3.95 -0.06 -21.94 16 8 N -0.71 -21.95 5.55 -466.16 -2.59 -24.54 16 9 C 0.14 4.29 5.49 86.38 0.47 4.77 16 10 C -0.08 -2.41 5.20 30.59 0.16 -2.26 16 11 C -0.14 -4.58 1.65 -52.18 -0.09 -4.67 16 12 C 0.19 7.97 6.15 86.38 0.53 8.50 16 13 N -0.74 -38.50 5.23 -343.44 -1.80 -40.30 16 14 C -0.25 -14.33 9.99 84.03 0.84 -13.49 16 15 H 0.07 3.91 7.83 -2.91 -0.02 3.88 16 16 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 17 N -0.97 -59.60 13.06 21.65 0.28 -59.32 16 18 Si 0.97 47.38 29.55 68.60 2.03 49.41 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 20 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 21 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 22 C -0.16 -4.56 9.87 30.60 0.30 -4.26 16 23 C -0.15 -3.81 9.58 30.60 0.29 -3.51 16 24 N -0.26 -6.50 11.66 -48.17 -0.56 -7.06 16 25 N -0.27 -4.62 3.72 -355.39 -1.32 -5.94 16 26 C 0.07 0.39 11.12 127.77 1.42 1.81 16 27 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.11 0.05 7.02 -2.39 -0.02 0.03 16 29 H 0.09 0.70 8.03 -2.39 -0.02 0.68 16 30 H 0.41 11.63 8.19 -92.70 -0.76 10.87 16 31 H 0.05 1.70 7.96 -2.39 -0.02 1.68 16 32 H 0.08 2.28 7.72 -2.39 -0.02 2.26 16 33 H 0.09 2.28 7.93 -2.39 -0.02 2.26 16 34 H 0.06 2.19 6.94 -2.39 -0.02 2.17 16 35 H 0.02 0.67 7.96 -2.39 -0.02 0.65 16 36 H 0.02 0.67 8.10 -2.39 -0.02 0.66 16 37 H 0.38 20.66 6.80 -92.71 -0.63 20.03 16 38 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 39 H 0.11 2.62 8.07 -2.39 -0.02 2.60 16 40 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.11 2.40 7.90 -2.38 -0.02 2.39 16 43 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.14 -0.27 6.98 -2.39 -0.02 -0.29 16 Total: -1.00 -79.20 393.55 2.08 -77.12 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: -0.36 Total: 31.81 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 6.53 Total: 1.32 kcal Atomic # 7 Polarization: -131.17 SS G_CDS: -5.98 Total: -137.16 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.06 Total: -21.94 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -0.08 Total: -0.56 kcal Total: -79.20 2.08 -77.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167345297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.449 kcal (2) G-P(sol) polarization free energy of solvation -79.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds