Wall clock time and date at job start Sat Apr 11 2020 06:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47343 * 2 1 4 4 N 1.46510 * 109.46715 * 119.99870 * 2 1 3 5 5 C 1.34775 * 119.99518 * 155.27532 * 4 2 1 6 6 O 1.21278 * 120.00558 * 354.83013 * 5 4 2 7 7 C 1.50700 * 119.99954 * 174.83063 * 5 4 2 8 8 H 1.09005 * 109.46813 * 34.15204 * 7 5 4 9 9 N 1.46496 * 109.47391 * 154.15513 * 7 5 4 10 10 C 1.38537 * 119.99891 * 205.00369 * 9 7 5 11 11 C 1.40042 * 120.45147 * 359.97438 * 10 9 7 12 12 C 1.38807 * 118.59384 * 179.97438 * 11 10 9 13 13 Cl 1.73597 * 120.33730 * 179.97438 * 12 11 10 14 14 N 1.32200 * 119.32311 * 359.97438 * 12 11 10 15 15 C 1.33418 * 120.86495 * 0.02562 * 14 12 11 16 16 C 1.41568 * 119.23971 * 179.97438 * 15 14 12 17 17 H 1.08007 * 120.00503 * 179.97438 * 16 15 14 18 18 C 1.40052 * 120.00207 * 359.97438 * 16 15 14 19 19 N 1.30696 * 119.99739 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00262 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47137 * 90.00203 * 20 18 16 22 22 H 1.48502 * 109.46836 * 209.99939 * 20 18 16 23 23 H 1.48492 * 109.47140 * 329.99726 * 20 18 16 24 24 N 1.32567 * 120.44891 * 179.71805 * 10 9 7 25 25 C 1.52996 * 109.47012 * 274.15952 * 7 5 4 26 26 C 1.52998 * 109.47039 * 305.19758 * 25 7 5 27 27 C 1.52993 * 109.47656 * 65.20157 * 25 7 5 28 28 H 1.09006 * 109.46942 * 300.00532 * 1 2 3 29 29 H 1.09004 * 109.47123 * 59.99731 * 1 2 3 30 30 H 1.08998 * 109.47376 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46925 * 239.99380 * 2 1 3 32 32 H 1.08997 * 109.47616 * 59.99804 * 3 2 1 33 33 H 1.09004 * 109.47093 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.47046 * 299.99743 * 3 2 1 35 35 H 0.96994 * 119.99696 * 334.99337 * 4 2 1 36 36 H 0.97002 * 119.99989 * 24.99942 * 9 7 5 37 37 H 1.08000 * 120.70671 * 359.95436 * 11 10 9 38 38 H 0.96999 * 119.99745 * 180.02562 * 19 18 16 39 39 H 1.09003 * 109.47304 * 185.20213 * 25 7 5 40 40 H 1.09001 * 109.47163 * 60.00327 * 26 25 7 41 41 H 1.09005 * 109.47442 * 180.02562 * 26 25 7 42 42 H 1.08997 * 109.47511 * 300.00369 * 26 25 7 43 43 H 1.09003 * 109.47198 * 172.44658 * 27 25 7 44 44 H 1.09000 * 109.47145 * 292.44100 * 27 25 7 45 45 H 1.08999 * 109.47483 * 52.44599 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 3.2424 -1.2544 1.1963 6 8 3.9019 -1.2724 0.1787 7 6 3.7919 -1.8625 2.4610 8 1 2.9775 -2.3043 3.0353 9 7 4.7679 -2.9003 2.1199 10 6 5.0234 -3.9304 3.0103 11 6 4.3545 -3.9886 4.2392 12 6 4.6398 -5.0380 5.1019 13 17 3.8375 -5.1540 6.6370 14 7 5.5287 -5.9482 4.7425 15 6 6.1518 -5.8690 3.5654 16 6 7.0980 -6.8623 3.2157 17 1 7.6093 -6.8105 2.2657 18 6 7.3710 -7.9122 4.1014 19 7 6.7519 -7.9752 5.2507 20 14 8.6200 -9.2225 3.6402 21 1 9.9674 -8.8082 4.1074 22 1 8.2475 -10.5089 4.2818 23 1 8.6379 -9.3919 2.1651 24 7 5.9008 -4.8773 2.7084 25 6 4.4732 -0.7759 3.2952 26 6 5.5299 -0.0678 2.4450 27 6 3.4284 0.2401 3.7606 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.4621 -0.7386 1.9895 36 1 5.2353 -2.8662 1.2705 37 1 3.6322 -3.2329 4.5103 38 1 6.9412 -8.7022 5.8643 39 1 4.9503 -1.2301 4.1636 40 1 5.0529 0.3865 1.5766 41 1 6.0157 0.7061 3.0394 42 1 6.2743 -0.7916 2.1134 43 1 3.8866 0.9369 4.4626 44 1 3.0473 0.7897 2.8999 45 1 2.6069 -0.2821 4.2510 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170189394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:27 Heat of formation + Delta-G solvation = -8.721433 kcal Electronic energy + Delta-G solvation = -27823.874832 eV Core-core repulsion = 23901.870110 eV Total energy + Delta-G solvation = -3922.004722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.49216 -38.98252 -36.93606 -35.87788 -35.60330 -34.22271 -33.13339 -31.66980 -31.12244 -29.51936 -27.52799 -27.17282 -26.49736 -26.26238 -22.59993 -22.07544 -21.59319 -20.81180 -19.72253 -18.04471 -17.40931 -16.68155 -16.13434 -15.87086 -15.55555 -14.96462 -14.64052 -14.54391 -14.30973 -13.86158 -13.70653 -13.64441 -13.37598 -13.10791 -12.94016 -12.84119 -12.62176 -12.56769 -12.21495 -12.06557 -11.68512 -11.62700 -11.42680 -11.37688 -11.25391 -11.07680 -10.97202 -10.91435 -10.82292 -10.38934 -10.21745 -10.00447 -9.71804 -9.23749 -9.12974 -9.02193 -8.28430 -7.49009 -7.18985 -6.57803 -4.80736 2.51216 2.54562 2.85803 2.96127 3.00673 3.06369 3.10125 3.14613 3.83627 3.94025 4.47647 4.60128 4.66682 4.76984 4.83423 4.96021 4.96590 5.12041 5.25671 5.35826 5.38868 5.46226 5.58671 5.63863 5.70376 5.80142 5.85113 5.86165 5.88650 5.95629 6.04875 6.08838 6.25771 6.30998 6.37910 6.39233 6.41612 6.79993 6.89573 7.10289 7.32795 7.69397 8.11510 8.11770 8.22146 8.51760 8.59013 9.04765 10.08288 10.23038 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015306 B = 0.002989 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.923950 B = 9364.419946 C =10181.977713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.135 3.865 3 C -0.163 4.163 4 N -0.726 5.726 5 C 0.521 3.479 6 O -0.530 6.530 7 C 0.152 3.848 8 H 0.098 0.902 9 N -0.711 5.711 10 C 0.460 3.540 11 C -0.409 4.409 12 C 0.270 3.730 13 Cl -0.083 7.083 14 N -0.527 5.527 15 C 0.435 3.565 16 C -0.392 4.392 17 H 0.096 0.904 18 C 0.065 3.935 19 N -0.701 5.701 20 Si 0.919 3.081 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.259 1.259 24 N -0.638 5.638 25 C -0.106 4.106 26 C -0.144 4.144 27 C -0.153 4.153 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.400 0.600 36 H 0.407 0.593 37 H 0.111 0.889 38 H 0.277 0.723 39 H 0.092 0.908 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.503 15.028 -3.486 18.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.030 3.970 3 C -0.222 4.222 4 N -0.380 5.380 5 C 0.307 3.693 6 O -0.406 6.406 7 C 0.041 3.959 8 H 0.115 0.885 9 N -0.349 5.349 10 C 0.213 3.787 11 C -0.442 4.442 12 C 0.089 3.911 13 Cl -0.055 7.055 14 N -0.248 5.248 15 C 0.200 3.800 16 C -0.427 4.427 17 H 0.114 0.886 18 C -0.163 4.163 19 N -0.322 5.322 20 Si 0.743 3.257 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.183 1.183 24 N -0.367 5.367 25 C -0.126 4.126 26 C -0.202 4.202 27 C -0.211 4.211 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.235 0.765 36 H 0.245 0.755 37 H 0.129 0.871 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.513 14.176 -4.072 17.551 hybrid contribution -0.407 0.126 0.479 0.641 sum -9.920 14.302 -3.593 17.772 Atomic orbital electron populations 1.22074 0.94139 1.02768 1.02830 1.20931 0.93967 0.92911 0.89149 1.22199 1.02138 0.95827 1.02003 1.46150 1.17557 1.57434 1.16821 1.20707 0.81103 0.77313 0.90176 1.90689 1.58468 1.57363 1.34039 1.20668 0.92877 0.89499 0.92839 0.88470 1.43783 1.45546 1.24462 1.21138 1.18044 0.88485 0.86083 0.86089 1.20899 1.16722 1.07544 0.99075 1.21424 0.92281 0.91363 0.86041 1.98294 1.77821 1.98049 1.31351 1.68586 1.10901 1.26148 1.19203 1.19457 0.90029 0.88567 0.81984 1.19382 1.16792 1.03349 1.03191 0.88554 1.26134 0.96790 0.98972 0.94399 1.70150 1.30275 1.26511 1.05236 0.86124 0.80285 0.79109 0.80200 1.19201 1.19972 1.18259 1.68221 1.23952 1.07341 1.37224 1.21557 0.96843 0.95113 0.99098 1.21806 0.98926 1.00266 0.99181 1.21949 0.98828 0.98985 1.01320 0.92035 0.91011 0.91854 0.89341 0.92424 0.92088 0.91732 0.76488 0.75503 0.87132 0.91159 0.88978 0.92837 0.92848 0.91853 0.92027 0.92429 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 9.38 37.16 0.35 -0.61 16 2 C 0.13 1.14 3.22 -67.93 -0.22 0.93 16 3 C -0.16 -1.26 9.48 37.15 0.35 -0.91 16 4 N -0.73 -6.87 4.03 -53.81 -0.22 -7.09 16 5 C 0.52 6.90 5.27 -10.99 -0.06 6.84 16 6 O -0.53 -8.77 14.95 5.56 0.08 -8.68 16 7 C 0.15 2.14 1.84 -69.09 -0.13 2.01 16 8 H 0.10 1.30 6.50 -51.93 -0.34 0.96 16 9 N -0.71 -13.13 4.67 -54.90 -0.26 -13.39 16 10 C 0.46 10.41 7.69 -154.99 -1.19 9.22 16 11 C -0.41 -8.94 8.76 -38.69 -0.34 -9.28 16 12 C 0.27 6.57 7.33 -17.18 -0.13 6.45 16 13 Cl -0.08 -1.72 29.15 -51.86 -1.51 -3.23 16 14 N -0.53 -14.56 7.86 -9.84 -0.08 -14.64 16 15 C 0.44 12.19 7.37 -158.35 -1.17 11.02 16 16 C -0.39 -10.61 9.37 -37.63 -0.35 -10.96 16 17 H 0.10 2.50 7.85 -52.48 -0.41 2.09 16 18 C 0.07 1.63 5.50 -17.36 -0.10 1.54 16 19 N -0.70 -18.34 11.42 55.55 0.63 -17.71 16 20 Si 0.92 18.39 29.56 -169.99 -5.02 13.37 16 21 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 22 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 24 N -0.64 -16.72 10.39 -11.89 -0.12 -16.85 16 25 C -0.11 -1.33 2.83 -90.63 -0.26 -1.58 16 26 C -0.14 -1.88 8.63 37.16 0.32 -1.56 16 27 C -0.15 -1.40 8.50 37.15 0.32 -1.09 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.94 7.52 -51.93 -0.39 0.55 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 35 H 0.40 2.87 8.36 -40.82 -0.34 2.53 16 36 H 0.41 7.90 7.92 -40.82 -0.32 7.57 16 37 H 0.11 2.05 6.34 -52.49 -0.33 1.72 16 38 H 0.28 6.54 8.29 -40.82 -0.34 6.20 16 39 H 0.09 1.35 7.81 -51.93 -0.41 0.94 16 40 H 0.05 0.70 6.70 -51.93 -0.35 0.35 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.96 7.76 -51.93 -0.40 0.56 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.48 6.96 -51.93 -0.36 0.12 16 45 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 LS Contribution 383.78 15.07 5.78 5.78 Total: -1.00 -31.16 383.78 -9.90 -41.06 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -6.59 Total: 9.37 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: -2.59 Total: 12.01 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -0.04 Total: -69.67 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.08 Total: -8.68 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.02 Total: 13.37 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -1.51 Total: -3.23 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.16 -9.90 -41.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170189394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.335 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds