Wall clock time and date at job start Sat Apr 11 2020 06:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47343 * 2 1 4 4 N 1.46510 * 109.46715 * 119.99870 * 2 1 3 5 5 C 1.34775 * 119.99518 * 155.27532 * 4 2 1 6 6 O 1.21278 * 120.00558 * 354.83013 * 5 4 2 7 7 C 1.50700 * 119.99954 * 174.83063 * 5 4 2 8 8 H 1.09005 * 109.46813 * 34.15204 * 7 5 4 9 9 N 1.46496 * 109.47391 * 154.15513 * 7 5 4 10 10 C 1.38537 * 119.99891 * 205.00369 * 9 7 5 11 11 C 1.40042 * 120.45147 * 359.97438 * 10 9 7 12 12 C 1.38807 * 118.59384 * 179.97438 * 11 10 9 13 13 Cl 1.73597 * 120.33730 * 179.97438 * 12 11 10 14 14 N 1.32200 * 119.32311 * 359.97438 * 12 11 10 15 15 C 1.33418 * 120.86495 * 0.02562 * 14 12 11 16 16 C 1.41568 * 119.23971 * 179.97438 * 15 14 12 17 17 H 1.08007 * 120.00503 * 179.97438 * 16 15 14 18 18 C 1.40052 * 120.00207 * 359.97438 * 16 15 14 19 19 N 1.30696 * 119.99739 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00262 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47137 * 90.00203 * 20 18 16 22 22 H 1.48502 * 109.46836 * 209.99939 * 20 18 16 23 23 H 1.48492 * 109.47140 * 329.99726 * 20 18 16 24 24 N 1.32567 * 120.44891 * 179.71805 * 10 9 7 25 25 C 1.52996 * 109.47012 * 274.15952 * 7 5 4 26 26 C 1.52998 * 109.47039 * 305.19758 * 25 7 5 27 27 C 1.52993 * 109.47656 * 65.20157 * 25 7 5 28 28 H 1.09006 * 109.46942 * 300.00532 * 1 2 3 29 29 H 1.09004 * 109.47123 * 59.99731 * 1 2 3 30 30 H 1.08998 * 109.47376 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46925 * 239.99380 * 2 1 3 32 32 H 1.08997 * 109.47616 * 59.99804 * 3 2 1 33 33 H 1.09004 * 109.47093 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.47046 * 299.99743 * 3 2 1 35 35 H 0.96994 * 119.99696 * 334.99337 * 4 2 1 36 36 H 0.97002 * 119.99989 * 24.99942 * 9 7 5 37 37 H 1.08000 * 120.70671 * 359.95436 * 11 10 9 38 38 H 0.96999 * 119.99745 * 180.02562 * 19 18 16 39 39 H 1.09003 * 109.47304 * 185.20213 * 25 7 5 40 40 H 1.09001 * 109.47163 * 60.00327 * 26 25 7 41 41 H 1.09005 * 109.47442 * 180.02562 * 26 25 7 42 42 H 1.08997 * 109.47511 * 300.00369 * 26 25 7 43 43 H 1.09003 * 109.47198 * 172.44658 * 27 25 7 44 44 H 1.09000 * 109.47145 * 292.44100 * 27 25 7 45 45 H 1.08999 * 109.47483 * 52.44599 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 3.2424 -1.2544 1.1963 6 8 3.9019 -1.2724 0.1787 7 6 3.7919 -1.8625 2.4610 8 1 2.9775 -2.3043 3.0353 9 7 4.7679 -2.9003 2.1199 10 6 5.0234 -3.9304 3.0103 11 6 4.3545 -3.9886 4.2392 12 6 4.6398 -5.0380 5.1019 13 17 3.8375 -5.1540 6.6370 14 7 5.5287 -5.9482 4.7425 15 6 6.1518 -5.8690 3.5654 16 6 7.0980 -6.8623 3.2157 17 1 7.6093 -6.8105 2.2657 18 6 7.3710 -7.9122 4.1014 19 7 6.7519 -7.9752 5.2507 20 14 8.6200 -9.2225 3.6402 21 1 9.9674 -8.8082 4.1074 22 1 8.2475 -10.5089 4.2818 23 1 8.6379 -9.3919 2.1651 24 7 5.9008 -4.8773 2.7084 25 6 4.4732 -0.7759 3.2952 26 6 5.5299 -0.0678 2.4450 27 6 3.4284 0.2401 3.7606 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.4621 -0.7386 1.9895 36 1 5.2353 -2.8662 1.2705 37 1 3.6322 -3.2329 4.5103 38 1 6.9412 -8.7022 5.8643 39 1 4.9503 -1.2301 4.1636 40 1 5.0529 0.3865 1.5766 41 1 6.0157 0.7061 3.0394 42 1 6.2743 -0.7916 2.1134 43 1 3.8866 0.9369 4.4626 44 1 3.0473 0.7897 2.8999 45 1 2.6069 -0.2821 4.2510 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170189394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:26 Heat of formation + Delta-G solvation = -28.283418 kcal Electronic energy + Delta-G solvation = -27824.723103 eV Core-core repulsion = 23901.870110 eV Total energy + Delta-G solvation = -3922.852993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.65608 -40.71920 -38.09743 -37.36284 -36.86781 -35.84030 -34.79408 -32.96258 -32.49230 -31.23261 -28.41664 -28.07483 -28.05199 -27.56661 -24.10681 -23.58106 -23.07607 -21.66950 -20.84154 -19.74220 -18.87775 -18.15373 -17.40612 -16.99047 -16.96773 -16.56039 -15.98193 -15.71919 -15.37691 -15.31987 -15.17602 -15.02894 -14.59839 -14.57252 -14.25574 -13.77315 -13.35687 -13.22957 -13.20256 -13.10851 -13.05858 -13.02024 -12.91303 -12.76012 -12.41644 -12.26644 -12.03865 -12.01986 -11.96433 -11.91523 -11.89006 -11.57443 -10.97920 -10.87773 -10.79955 -10.14268 -10.11189 -9.41988 -8.86965 -8.44006 -6.79765 0.64618 1.11769 1.13874 1.41987 1.47782 1.53264 1.58178 1.88211 2.21531 2.52862 2.74736 3.57685 3.73651 3.84654 3.93096 3.97916 4.13530 4.17373 4.24112 4.32051 4.34972 4.55396 4.60389 4.66203 4.74748 4.77448 4.79016 4.90805 4.94611 4.96544 5.00539 5.04424 5.10640 5.17767 5.26114 5.28762 5.33005 5.37321 5.42322 5.53634 5.95653 6.15428 6.41939 6.49038 6.66857 6.70527 7.15474 7.20526 8.20091 8.36474 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015306 B = 0.002989 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.923950 B = 9364.419946 C =10181.977713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.131 3.869 3 C -0.158 4.158 4 N -0.707 5.707 5 C 0.524 3.476 6 O -0.569 6.569 7 C 0.146 3.854 8 H 0.112 0.888 9 N -0.704 5.704 10 C 0.454 3.546 11 C -0.394 4.394 12 C 0.248 3.752 13 Cl -0.054 7.054 14 N -0.562 5.562 15 C 0.411 3.589 16 C -0.429 4.429 17 H 0.091 0.909 18 C 0.026 3.974 19 N -0.736 5.736 20 Si 0.999 3.001 21 H -0.260 1.260 22 H -0.262 1.262 23 H -0.257 1.257 24 N -0.669 5.669 25 C -0.101 4.101 26 C -0.139 4.139 27 C -0.147 4.147 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.078 0.922 35 H 0.415 0.585 36 H 0.401 0.599 37 H 0.146 0.854 38 H 0.285 0.715 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.068 0.932 42 H 0.032 0.968 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.369 16.516 -2.865 20.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.027 3.973 3 C -0.216 4.216 4 N -0.360 5.360 5 C 0.310 3.690 6 O -0.447 6.447 7 C 0.036 3.964 8 H 0.129 0.871 9 N -0.340 5.340 10 C 0.207 3.793 11 C -0.427 4.427 12 C 0.069 3.931 13 Cl -0.026 7.026 14 N -0.284 5.284 15 C 0.174 3.826 16 C -0.464 4.464 17 H 0.109 0.891 18 C -0.199 4.199 19 N -0.358 5.358 20 Si 0.818 3.182 21 H -0.185 1.185 22 H -0.186 1.186 23 H -0.181 1.181 24 N -0.400 5.400 25 C -0.121 4.121 26 C -0.197 4.197 27 C -0.204 4.204 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.253 0.747 36 H 0.237 0.763 37 H 0.164 0.836 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.051 0.949 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.478 15.751 -3.421 19.787 hybrid contribution 0.031 -0.146 0.272 0.310 sum -11.447 15.605 -3.149 19.607 Atomic orbital electron populations 1.22033 0.91595 1.03003 1.04419 1.21066 0.95828 0.92908 0.87491 1.22153 1.00484 0.95377 1.03631 1.46040 1.16132 1.55973 1.17862 1.20501 0.81966 0.77445 0.89126 1.90686 1.59816 1.59125 1.35118 1.21013 0.92406 0.89000 0.93936 0.87061 1.43930 1.45804 1.24194 1.20046 1.18359 0.87768 0.86128 0.87079 1.21162 1.16275 1.07243 0.97983 1.21902 0.92149 0.91538 0.87548 1.98286 1.76946 1.98001 1.29327 1.68577 1.12523 1.27820 1.19514 1.19816 0.90699 0.89344 0.82707 1.19685 1.17930 1.04891 1.03928 0.89051 1.27039 0.98472 1.00531 0.93826 1.70215 1.31699 1.27610 1.06260 0.84963 0.77361 0.76079 0.79810 1.18452 1.18619 1.18100 1.68236 1.25706 1.08374 1.37687 1.21508 0.97542 0.95336 0.97746 1.21749 0.98509 0.99899 0.99513 1.21921 0.98208 0.98255 1.02033 0.90148 0.89737 0.92303 0.91982 0.90646 0.94573 0.90303 0.74711 0.76263 0.83625 0.90380 0.90889 0.92895 0.91264 0.94885 0.90985 0.91441 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.38 71.98 0.68 -0.68 16 2 C 0.13 1.98 3.22 44.99 0.15 2.12 16 3 C -0.16 -2.10 9.48 71.98 0.68 -1.42 16 4 N -0.71 -11.84 4.03 -442.54 -1.78 -13.62 16 5 C 0.52 13.39 5.27 87.66 0.46 13.85 16 6 O -0.57 -19.07 14.95 -3.02 -0.05 -19.12 16 7 C 0.15 3.93 1.84 44.24 0.08 4.01 16 8 H 0.11 2.69 6.50 -2.38 -0.02 2.67 16 9 N -0.70 -26.35 4.67 -327.60 -1.53 -27.88 16 10 C 0.45 20.90 7.69 133.39 1.03 21.93 16 11 C -0.39 -17.02 8.76 22.84 0.20 -16.82 16 12 C 0.25 12.09 7.33 84.77 0.62 12.71 16 13 Cl -0.05 -2.17 29.15 -2.72 -0.08 -2.24 16 14 N -0.56 -31.87 7.86 -185.04 -1.45 -33.33 16 15 C 0.41 23.97 7.37 135.16 1.00 24.97 16 16 C -0.43 -24.21 9.37 23.53 0.22 -23.99 16 17 H 0.09 5.00 7.85 -2.91 -0.02 4.98 16 18 C 0.03 1.33 5.50 85.30 0.47 1.80 16 19 N -0.74 -39.40 11.42 21.84 0.25 -39.15 16 20 Si 1.00 38.25 29.56 68.60 2.03 40.27 16 21 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 22 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 23 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 24 N -0.67 -36.49 10.39 -191.54 -1.99 -38.48 16 25 C -0.10 -2.38 2.83 -10.80 -0.03 -2.41 16 26 C -0.14 -3.58 8.63 71.98 0.62 -2.96 16 27 C -0.15 -2.19 8.50 71.98 0.61 -1.57 16 28 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 1.30 7.52 -2.39 -0.02 1.28 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.42 4.51 8.36 -92.71 -0.78 3.73 16 36 H 0.40 16.17 7.92 -92.71 -0.73 15.43 16 37 H 0.15 5.07 6.34 -2.91 -0.02 5.06 16 38 H 0.29 13.65 8.29 -92.71 -0.77 12.88 16 39 H 0.07 2.04 7.81 -2.39 -0.02 2.02 16 40 H 0.05 1.36 6.70 -2.39 -0.02 1.34 16 41 H 0.07 1.52 8.14 -2.38 -0.02 1.51 16 42 H 0.03 1.03 7.76 -2.39 -0.02 1.01 16 43 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.07 0.89 6.96 -2.39 -0.02 0.87 16 45 H 0.08 0.90 8.13 -2.39 -0.02 0.88 16 Total: -1.00 -71.85 383.78 1.70 -70.15 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: -0.48 Total: 31.87 kcal Atomic # 6 Polarization: 24.76 SS G_CDS: 6.78 Total: 31.54 kcal Atomic # 7 Polarization: -145.95 SS G_CDS: -6.51 Total: -152.46 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.05 Total: -19.12 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.27 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -0.08 Total: -2.24 kcal Total: -71.85 1.70 -70.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170189394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.863 kcal (2) G-P(sol) polarization free energy of solvation -71.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds