Wall clock time and date at job start Sat Apr 11 2020 05:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34234 * 126.28197 * 2 1 4 4 H 0.97005 * 125.73696 * 359.95889 * 3 2 1 5 5 N 1.39931 * 108.52126 * 179.97438 * 3 2 1 6 6 C 1.30527 * 108.89481 * 359.75328 * 5 3 2 7 7 Cl 1.73597 * 126.00341 * 180.26614 * 6 5 3 8 8 C 1.38064 * 126.27716 * 179.97438 * 2 1 3 9 9 C 1.47387 * 126.42680 * 359.97438 * 8 2 1 10 10 O 1.21609 * 119.99925 * 89.99247 * 9 8 2 11 11 N 1.34773 * 119.99522 * 269.99406 * 9 8 2 12 12 C 1.46924 * 120.63432 * 359.97438 * 11 9 8 13 13 C 1.53194 * 108.77390 * 233.58615 * 12 11 9 14 14 C 1.53040 * 109.31367 * 305.36176 * 13 12 11 15 15 H 1.08995 * 109.45933 * 301.36091 * 14 13 12 16 16 C 1.53001 * 109.45855 * 181.38794 * 14 13 12 17 17 N 1.46490 * 109.47264 * 64.97245 * 16 14 13 18 18 C 1.36935 * 120.00121 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.46685 * 269.99637 * 22 20 18 24 24 H 1.48494 * 109.47357 * 29.99716 * 22 20 18 25 25 H 1.48502 * 109.47120 * 150.00435 * 22 20 18 26 26 C 1.53047 * 109.52411 * 61.37449 * 14 13 12 27 27 H 1.09001 * 109.49516 * 178.67707 * 26 14 13 28 28 C 1.53000 * 109.49788 * 58.58043 * 26 14 13 29 29 C 1.46931 * 120.62671 * 179.97438 * 11 9 8 30 30 H 1.08996 * 109.47713 * 270.00609 * 1 2 3 31 31 H 1.09010 * 109.46726 * 30.00504 * 1 2 3 32 32 H 1.08997 * 109.46850 * 150.00016 * 1 2 3 33 33 H 1.08997 * 109.58682 * 113.80319 * 12 11 9 34 34 H 1.09000 * 109.70075 * 353.44145 * 12 11 9 35 35 H 1.09002 * 109.49391 * 185.41031 * 13 12 11 36 36 H 1.09002 * 109.52444 * 65.33588 * 13 12 11 37 37 H 1.09003 * 109.46836 * 304.96952 * 16 14 13 38 38 H 1.08999 * 109.47071 * 184.97991 * 16 14 13 39 39 H 0.97000 * 120.00577 * 0.02562 * 17 16 14 40 40 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 41 41 H 1.08998 * 109.47104 * 59.99427 * 28 26 14 42 42 H 1.08995 * 109.46976 * 179.97438 * 28 26 14 43 43 H 1.09003 * 109.47162 * 300.00093 * 28 26 14 44 44 H 1.09001 * 109.58671 * 246.20115 * 29 11 9 45 45 H 1.09001 * 109.58811 * 6.48519 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3014 1.0821 0.0000 4 1 2.0019 2.0047 -0.0006 5 7 3.6340 0.6552 0.0006 6 6 3.6598 -0.6498 0.0063 7 17 5.0841 -1.6422 0.0158 8 6 2.3239 -1.1130 0.0005 9 6 1.8858 -2.5202 0.0017 10 8 1.7045 -3.1015 -1.0510 11 7 1.6860 -3.1628 1.1694 12 6 1.9013 -2.4740 2.4492 13 6 2.8649 -3.3064 3.3010 14 6 2.3195 -4.7298 3.4373 15 1 1.3309 -4.6976 3.8952 16 6 3.2618 -5.5548 4.3162 17 7 3.2651 -5.0085 5.6755 18 6 4.0399 -5.5880 6.6444 19 1 4.6489 -6.4475 6.4065 20 6 4.0427 -5.0707 7.9326 21 7 3.3000 -4.0234 8.2228 22 14 5.1003 -5.8609 9.2542 23 1 4.3196 -6.9174 9.9468 24 1 6.3044 -6.4646 8.6293 25 1 5.5173 -4.8289 10.2372 26 6 2.2192 -5.3739 2.0526 27 1 1.8530 -6.3957 2.1523 28 6 3.6005 -5.3878 1.3946 29 6 1.2486 -4.5654 1.1868 30 1 -0.3634 0.0001 1.0276 31 1 -0.3633 0.8900 -0.5140 32 1 -0.3633 -0.8900 -0.5138 33 1 0.9506 -2.3678 2.9715 34 1 2.3312 -1.4888 2.2686 35 1 2.9582 -2.8564 4.2894 36 1 3.8430 -3.3360 2.8209 37 1 4.2706 -5.5136 3.9056 38 1 2.9218 -6.5901 4.3415 39 1 2.7178 -4.2367 5.8894 40 1 2.7512 -3.6129 7.5364 41 1 4.2916 -5.9610 2.0126 42 1 3.5286 -5.8470 0.4087 43 1 3.9653 -4.3656 1.2941 44 1 0.2445 -4.6299 1.6059 45 1 1.2466 -4.9601 0.1707 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184547499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:35 Heat of formation + Delta-G solvation = 37.855752 kcal Electronic energy + Delta-G solvation = -28392.759427 eV Core-core repulsion = 24472.774444 eV Total energy + Delta-G solvation = -3919.984983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.94547 -40.11834 -37.96879 -37.05617 -35.09492 -33.60287 -33.07593 -31.99722 -31.35937 -30.18423 -28.13503 -26.93607 -26.42244 -23.65388 -23.04367 -22.66972 -22.29034 -21.31514 -19.68196 -18.51238 -17.92444 -17.24357 -16.88826 -16.00770 -15.56405 -15.55553 -15.29544 -14.88840 -14.60438 -14.17118 -14.01159 -13.77791 -13.62855 -13.56709 -13.27570 -12.93690 -12.86516 -12.80015 -12.42070 -12.23585 -12.22177 -11.99456 -11.59742 -11.39010 -11.04806 -10.95667 -10.70450 -10.65855 -10.37092 -10.23312 -10.14480 -9.96380 -9.95592 -9.78449 -9.15240 -9.05832 -8.83936 -8.61134 -6.96067 -6.08509 -3.07127 1.15287 1.18439 1.84690 2.40705 2.52720 3.05375 3.52908 3.57674 3.71594 4.06907 4.37295 4.45856 4.67305 4.74679 4.82446 4.93874 4.94529 4.99042 5.13071 5.24115 5.27952 5.30777 5.44427 5.51624 5.55681 5.64270 5.72600 5.77954 5.82528 5.86860 5.96726 6.03594 6.18720 6.26796 6.36913 6.41849 6.47957 6.57612 6.61640 6.76540 6.90354 6.90424 7.33193 7.84253 8.08614 8.78119 9.26260 10.12501 10.27846 11.40307 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014330 B = 0.003104 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.500635 B = 9019.369698 C = 9374.735753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.140 3.860 3 N -0.447 5.447 4 H 0.448 0.552 5 N -0.274 5.274 6 C 0.160 3.840 7 Cl 0.025 6.975 8 C -0.264 4.264 9 C 0.599 3.401 10 O -0.535 6.535 11 N -0.593 5.593 12 C 0.110 3.890 13 C -0.126 4.126 14 C -0.089 4.089 15 H 0.070 0.930 16 C 0.164 3.836 17 N -0.743 5.743 18 C -0.328 4.328 19 H 0.063 0.937 20 C -0.046 4.046 21 N -0.946 5.946 22 Si 1.081 2.919 23 H -0.296 1.296 24 H -0.295 1.295 25 H -0.288 1.288 26 C -0.097 4.097 27 H 0.082 0.918 28 C -0.147 4.147 29 C 0.117 3.883 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.023 0.977 38 H 0.018 0.982 39 H 0.366 0.634 40 H 0.254 0.746 41 H 0.061 0.939 42 H 0.049 0.951 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.925 9.232 -19.325 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.008 3.992 3 N -0.157 5.157 4 H 0.295 0.705 5 N -0.099 5.099 6 C -0.033 4.033 7 Cl 0.053 6.947 8 C -0.280 4.280 9 C 0.385 3.615 10 O -0.412 6.412 11 N -0.325 5.325 12 C -0.012 4.012 13 C -0.165 4.165 14 C -0.108 4.108 15 H 0.088 0.912 16 C 0.037 3.963 17 N -0.389 5.389 18 C -0.459 4.459 19 H 0.081 0.919 20 C -0.243 4.243 21 N -0.592 5.592 22 Si 0.913 3.087 23 H -0.224 1.224 24 H -0.222 1.222 25 H -0.214 1.214 26 C -0.117 4.117 27 H 0.100 0.900 28 C -0.204 4.204 29 C -0.005 4.005 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.040 0.960 38 H 0.036 0.964 39 H 0.199 0.801 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.564 9.732 -18.338 21.494 hybrid contribution -0.910 -0.116 -1.410 1.682 sum -6.474 9.616 -19.749 22.899 Atomic orbital electron populations 1.20636 0.85660 1.05033 1.04546 1.21398 0.94843 0.85974 0.96980 1.45845 1.03040 1.08650 1.58129 0.70528 1.77189 0.96418 1.10722 1.25586 1.22589 0.88954 0.90506 1.01263 1.98443 1.35005 1.64590 1.96644 1.19731 0.91196 0.94533 1.22499 1.17122 0.76635 0.84311 0.83434 1.90773 1.51719 1.67625 1.31077 1.48020 1.66134 1.12642 1.05716 1.21780 0.99934 0.96034 0.83488 1.21952 0.98785 0.95431 1.00287 1.21322 1.00126 0.94875 0.94463 0.91194 1.20644 0.95840 0.94635 0.85195 1.42386 1.54481 1.36317 1.05693 1.20065 1.21612 1.12203 0.92040 0.91864 1.25731 1.02361 0.98715 0.97529 1.70861 1.29822 1.22836 1.35690 0.83210 0.75000 0.75032 0.75507 1.22375 1.22193 1.21422 1.21452 0.96210 0.99248 0.94790 0.89953 1.21880 0.96486 1.02263 0.99781 1.21714 0.97039 0.79927 1.01797 0.88836 0.89897 0.88813 0.91251 0.90380 0.89995 0.91094 0.95965 0.96444 0.80095 0.93512 0.92027 0.93182 0.92381 0.91371 0.88948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.52 10.25 36.01 0.37 -0.15 16 2 C 0.14 1.22 7.29 -81.60 -0.60 0.63 16 3 N -0.45 -3.62 7.28 33.86 0.25 -3.37 16 4 H 0.45 1.86 8.96 -182.72 -1.64 0.22 16 5 N -0.27 -3.25 12.64 33.18 0.42 -2.83 16 6 C 0.16 2.05 7.79 -16.91 -0.13 1.92 16 7 Cl 0.03 0.33 29.19 -51.86 -1.51 -1.18 16 8 C -0.26 -3.18 3.86 -105.04 -0.41 -3.59 16 9 C 0.60 8.05 7.05 -12.54 -0.09 7.96 16 10 O -0.54 -8.75 16.52 5.27 0.09 -8.66 16 11 N -0.59 -7.23 2.41 -174.07 -0.42 -7.65 16 12 C 0.11 1.31 6.33 -3.71 -0.02 1.29 16 13 C -0.13 -1.85 4.90 -26.61 -0.13 -1.98 16 14 C -0.09 -1.35 1.96 -90.57 -0.18 -1.53 16 15 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 16 C 0.16 3.25 5.19 -4.05 -0.02 3.23 16 17 N -0.74 -18.41 5.31 -59.91 -0.32 -18.73 16 18 C -0.33 -9.28 9.99 -15.06 -0.15 -9.43 16 19 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 20 C -0.05 -1.34 5.50 -17.43 -0.10 -1.44 16 21 N -0.95 -29.03 13.70 55.49 0.76 -28.27 16 22 Si 1.08 26.09 29.92 -169.99 -5.09 21.00 16 23 H -0.30 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.30 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 C -0.10 -1.25 2.72 -90.52 -0.25 -1.50 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 C -0.15 -1.97 8.38 37.16 0.31 -1.66 16 29 C 0.12 1.39 5.83 -3.73 -0.02 1.36 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.22 8.14 -51.92 -0.42 -0.20 16 32 H 0.09 0.59 7.96 -51.93 -0.41 0.18 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.92 6.27 -51.93 -0.33 0.59 16 35 H 0.08 1.37 7.15 -51.93 -0.37 1.00 16 36 H 0.07 1.10 6.34 -51.93 -0.33 0.77 16 37 H 0.02 0.46 6.74 -51.93 -0.35 0.11 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.37 9.14 5.68 -40.82 -0.23 8.91 16 40 H 0.25 7.61 6.77 -40.82 -0.28 7.34 16 41 H 0.06 0.87 6.58 -51.93 -0.34 0.53 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.83 5.97 -51.93 -0.31 0.52 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.09 1.15 7.00 -51.93 -0.36 0.78 16 LS Contribution 373.73 15.07 5.63 5.63 Total: -1.00 -35.24 373.73 -9.14 -44.38 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -7.54 Total: 4.58 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -1.41 Total: -4.88 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: 0.69 Total: -60.85 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.66 kcal Atomic # 14 Polarization: 26.09 SS G_CDS: -5.09 Total: 21.00 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -1.51 Total: -1.18 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.24 -9.14 -44.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184547499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.232 kcal (2) G-P(sol) polarization free energy of solvation -35.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds