Wall clock time and date at job start Sat Apr 11 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34234 * 126.28197 * 2 1 4 4 H 0.97005 * 125.73696 * 359.95889 * 3 2 1 5 5 N 1.39931 * 108.52126 * 179.97438 * 3 2 1 6 6 C 1.30527 * 108.89481 * 359.75328 * 5 3 2 7 7 Cl 1.73597 * 126.00341 * 180.26614 * 6 5 3 8 8 C 1.38064 * 126.27716 * 179.97438 * 2 1 3 9 9 C 1.47387 * 126.42680 * 359.97438 * 8 2 1 10 10 O 1.21609 * 119.99925 * 89.99247 * 9 8 2 11 11 N 1.34773 * 119.99522 * 269.99406 * 9 8 2 12 12 C 1.46924 * 120.63432 * 359.97438 * 11 9 8 13 13 C 1.53194 * 108.77390 * 233.58615 * 12 11 9 14 14 C 1.53040 * 109.31367 * 305.36176 * 13 12 11 15 15 H 1.08995 * 109.45933 * 301.36091 * 14 13 12 16 16 C 1.53001 * 109.45855 * 181.38794 * 14 13 12 17 17 N 1.46490 * 109.47264 * 64.97245 * 16 14 13 18 18 C 1.36935 * 120.00121 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.46685 * 269.99637 * 22 20 18 24 24 H 1.48494 * 109.47357 * 29.99716 * 22 20 18 25 25 H 1.48502 * 109.47120 * 150.00435 * 22 20 18 26 26 C 1.53047 * 109.52411 * 61.37449 * 14 13 12 27 27 H 1.09001 * 109.49516 * 178.67707 * 26 14 13 28 28 C 1.53000 * 109.49788 * 58.58043 * 26 14 13 29 29 C 1.46931 * 120.62671 * 179.97438 * 11 9 8 30 30 H 1.08996 * 109.47713 * 270.00609 * 1 2 3 31 31 H 1.09010 * 109.46726 * 30.00504 * 1 2 3 32 32 H 1.08997 * 109.46850 * 150.00016 * 1 2 3 33 33 H 1.08997 * 109.58682 * 113.80319 * 12 11 9 34 34 H 1.09000 * 109.70075 * 353.44145 * 12 11 9 35 35 H 1.09002 * 109.49391 * 185.41031 * 13 12 11 36 36 H 1.09002 * 109.52444 * 65.33588 * 13 12 11 37 37 H 1.09003 * 109.46836 * 304.96952 * 16 14 13 38 38 H 1.08999 * 109.47071 * 184.97991 * 16 14 13 39 39 H 0.97000 * 120.00577 * 0.02562 * 17 16 14 40 40 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 41 41 H 1.08998 * 109.47104 * 59.99427 * 28 26 14 42 42 H 1.08995 * 109.46976 * 179.97438 * 28 26 14 43 43 H 1.09003 * 109.47162 * 300.00093 * 28 26 14 44 44 H 1.09001 * 109.58671 * 246.20115 * 29 11 9 45 45 H 1.09001 * 109.58811 * 6.48519 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3014 1.0821 0.0000 4 1 2.0019 2.0047 -0.0006 5 7 3.6340 0.6552 0.0006 6 6 3.6598 -0.6498 0.0063 7 17 5.0841 -1.6422 0.0158 8 6 2.3239 -1.1130 0.0005 9 6 1.8858 -2.5202 0.0017 10 8 1.7045 -3.1015 -1.0510 11 7 1.6860 -3.1628 1.1694 12 6 1.9013 -2.4740 2.4492 13 6 2.8649 -3.3064 3.3010 14 6 2.3195 -4.7298 3.4373 15 1 1.3309 -4.6976 3.8952 16 6 3.2618 -5.5548 4.3162 17 7 3.2651 -5.0085 5.6755 18 6 4.0399 -5.5880 6.6444 19 1 4.6489 -6.4475 6.4065 20 6 4.0427 -5.0707 7.9326 21 7 3.3000 -4.0234 8.2228 22 14 5.1003 -5.8609 9.2542 23 1 4.3196 -6.9174 9.9468 24 1 6.3044 -6.4646 8.6293 25 1 5.5173 -4.8289 10.2372 26 6 2.2192 -5.3739 2.0526 27 1 1.8530 -6.3957 2.1523 28 6 3.6005 -5.3878 1.3946 29 6 1.2486 -4.5654 1.1868 30 1 -0.3634 0.0001 1.0276 31 1 -0.3633 0.8900 -0.5140 32 1 -0.3633 -0.8900 -0.5138 33 1 0.9506 -2.3678 2.9715 34 1 2.3312 -1.4888 2.2686 35 1 2.9582 -2.8564 4.2894 36 1 3.8430 -3.3360 2.8209 37 1 4.2706 -5.5136 3.9056 38 1 2.9218 -6.5901 4.3415 39 1 2.7178 -4.2367 5.8894 40 1 2.7512 -3.6129 7.5364 41 1 4.2916 -5.9610 2.0126 42 1 3.5286 -5.8470 0.4087 43 1 3.9653 -4.3656 1.2941 44 1 0.2445 -4.6299 1.6059 45 1 1.2466 -4.9601 0.1707 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184547499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:34 Heat of formation + Delta-G solvation = 14.506196 kcal Electronic energy + Delta-G solvation = -28393.771940 eV Core-core repulsion = 24472.774444 eV Total energy + Delta-G solvation = -3920.997496 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.76054 -41.17580 -39.16332 -37.99976 -36.79212 -34.98475 -33.77905 -33.34027 -32.24092 -31.85573 -28.84754 -28.33559 -27.54180 -25.47423 -24.30426 -23.81734 -23.11585 -22.60423 -20.66180 -19.70493 -19.23390 -18.72970 -17.91196 -16.93778 -16.77529 -16.42298 -16.41379 -16.23781 -15.97466 -15.61468 -15.34995 -15.06613 -14.81588 -14.47964 -14.19804 -14.14898 -14.08788 -13.68897 -13.54004 -13.34197 -13.04054 -12.87945 -12.78572 -12.68689 -12.61576 -12.45909 -12.11418 -11.94188 -11.89902 -11.76184 -11.43847 -11.42265 -11.12797 -11.02726 -10.88224 -10.60313 -9.88002 -9.65993 -9.05838 -8.37570 -5.30221 0.31951 0.41737 0.95092 1.41162 1.58867 1.69102 1.79849 1.83459 2.12809 2.71862 3.35008 3.41566 3.56609 3.65398 3.72100 3.76884 3.85917 3.98742 4.05795 4.15664 4.23796 4.35863 4.41356 4.57754 4.61905 4.62206 4.69291 4.73230 4.78778 4.80988 4.82087 4.94206 5.02663 5.04575 5.10838 5.15447 5.21038 5.28614 5.47999 5.59281 5.61162 5.94478 6.20007 6.32480 6.53456 7.07942 7.13465 8.04383 8.15014 9.14904 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014330 B = 0.003104 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.500635 B = 9019.369698 C = 9374.735753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.164 3.836 3 N -0.427 5.427 4 H 0.466 0.534 5 N -0.297 5.297 6 C 0.145 3.855 7 Cl 0.010 6.990 8 C -0.298 4.298 9 C 0.605 3.395 10 O -0.569 6.569 11 N -0.588 5.588 12 C 0.121 3.879 13 C -0.120 4.120 14 C -0.076 4.076 15 H 0.074 0.926 16 C 0.165 3.835 17 N -0.753 5.753 18 C -0.334 4.334 19 H 0.060 0.940 20 C -0.101 4.101 21 N -0.974 5.974 22 Si 1.127 2.873 23 H -0.284 1.284 24 H -0.277 1.277 25 H -0.292 1.292 26 C -0.090 4.090 27 H 0.095 0.905 28 C -0.143 4.143 29 C 0.120 3.880 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.014 0.986 38 H 0.015 0.985 39 H 0.363 0.637 40 H 0.245 0.755 41 H 0.049 0.951 42 H 0.058 0.942 43 H 0.046 0.954 44 H 0.091 0.909 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.519 9.806 -19.810 23.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.030 3.970 3 N -0.139 5.139 4 H 0.317 0.683 5 N -0.123 5.123 6 C -0.047 4.047 7 Cl 0.038 6.962 8 C -0.313 4.313 9 C 0.392 3.608 10 O -0.448 6.448 11 N -0.320 5.320 12 C -0.001 4.001 13 C -0.159 4.159 14 C -0.095 4.095 15 H 0.093 0.907 16 C 0.038 3.962 17 N -0.398 5.398 18 C -0.466 4.466 19 H 0.078 0.922 20 C -0.292 4.292 21 N -0.622 5.622 22 Si 0.952 3.048 23 H -0.211 1.211 24 H -0.203 1.203 25 H -0.218 1.218 26 C -0.109 4.109 27 H 0.113 0.887 28 C -0.201 4.201 29 C -0.002 4.002 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.032 0.968 38 H 0.033 0.967 39 H 0.195 0.805 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.109 0.891 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.160 10.317 -18.854 22.653 hybrid contribution -0.432 -0.263 -1.318 1.412 sum -7.592 10.053 -20.172 23.782 Atomic orbital electron populations 1.20837 0.82696 1.06209 1.06052 1.21881 0.96238 0.84885 0.93978 1.45862 1.01792 1.09639 1.56600 0.68308 1.77107 0.98538 1.10335 1.26327 1.22652 0.88865 0.90883 1.02303 1.98426 1.35944 1.65087 1.96766 1.19756 0.91418 0.94725 1.25428 1.17250 0.75769 0.84748 0.83000 1.90750 1.53319 1.68560 1.32175 1.48025 1.65588 1.12790 1.05551 1.21691 1.00096 0.95437 0.82897 1.21827 0.99071 0.95486 0.99471 1.21191 0.98888 0.94545 0.94895 0.90742 1.20765 0.96596 0.95072 0.83738 1.42552 1.53958 1.36244 1.07020 1.20387 1.21368 1.11863 0.92968 0.92164 1.27091 1.03270 0.98838 1.00028 1.70961 1.31258 1.24250 1.35706 0.82624 0.74357 0.74483 0.73322 1.21075 1.20264 1.21843 1.21408 0.96248 1.00023 0.93253 0.88668 1.21832 0.96664 1.01441 1.00116 1.21747 0.97628 0.79396 1.01441 0.86945 0.86702 0.89644 0.89108 0.89967 0.92295 0.92460 0.96843 0.96737 0.80450 0.94419 0.93176 0.92272 0.93464 0.89093 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 10.25 71.24 0.73 0.05 16 2 C 0.16 2.46 7.29 42.15 0.31 2.77 16 3 N -0.43 -5.94 7.28 -46.79 -0.34 -6.28 16 4 H 0.47 2.50 8.96 -213.42 -1.91 0.58 16 5 N -0.30 -6.78 12.64 -48.95 -0.62 -7.40 16 6 C 0.15 3.69 7.79 85.66 0.67 4.36 16 7 Cl 0.01 0.27 29.19 -2.72 -0.08 0.19 16 8 C -0.30 -6.83 3.86 -20.13 -0.08 -6.91 16 9 C 0.61 15.62 7.05 86.65 0.61 16.24 16 10 O -0.57 -18.24 16.52 -4.06 -0.07 -18.31 16 11 N -0.59 -13.47 2.41 -822.90 -1.98 -15.45 16 12 C 0.12 2.71 6.33 86.36 0.55 3.25 16 13 C -0.12 -3.51 4.90 30.67 0.15 -3.36 16 14 C -0.08 -2.27 1.96 -10.76 -0.02 -2.29 16 15 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 16 C 0.16 6.55 5.19 86.38 0.45 6.99 16 17 N -0.75 -37.72 5.31 -343.47 -1.83 -39.55 16 18 C -0.33 -19.02 9.99 84.03 0.84 -18.18 16 19 H 0.06 3.40 7.83 -2.91 -0.02 3.38 16 20 C -0.10 -5.85 5.50 84.86 0.47 -5.39 16 21 N -0.97 -60.27 13.70 21.65 0.30 -59.97 16 22 Si 1.13 52.31 29.92 68.60 2.05 54.36 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 26 C -0.09 -2.19 2.72 -10.73 -0.03 -2.22 16 27 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 28 C -0.14 -3.81 8.38 71.98 0.60 -3.21 16 29 C 0.12 2.59 5.83 86.35 0.50 3.09 16 30 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.11 0.09 8.14 -2.38 -0.02 0.07 16 32 H 0.08 0.83 7.96 -2.39 -0.02 0.81 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 1.82 6.27 -2.39 -0.01 1.81 16 35 H 0.06 2.00 7.15 -2.39 -0.02 1.98 16 36 H 0.06 1.82 6.34 -2.39 -0.02 1.80 16 37 H 0.01 0.57 6.74 -2.39 -0.02 0.55 16 38 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.36 18.45 5.68 -92.71 -0.53 17.92 16 40 H 0.25 15.00 6.77 -92.71 -0.63 14.37 16 41 H 0.05 1.42 6.58 -2.39 -0.02 1.41 16 42 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 43 H 0.05 1.36 5.97 -2.39 -0.01 1.34 16 44 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.09 2.08 7.00 -2.39 -0.02 2.06 16 Total: -1.00 -77.07 373.73 1.93 -75.14 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -1.25 Total: 22.07 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 5.75 Total: -4.79 kcal Atomic # 7 Polarization: -124.18 SS G_CDS: -4.47 Total: -128.66 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.07 Total: -18.31 kcal Atomic # 14 Polarization: 52.31 SS G_CDS: 2.05 Total: 54.36 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -0.08 Total: 0.19 kcal Total: -77.07 1.93 -75.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184547499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.645 kcal (2) G-P(sol) polarization free energy of solvation -77.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds