Wall clock time and date at job start Sat Apr 11 2020 05:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29858 * 125.73880 * 2 1 4 4 O 1.41676 * 107.92972 * 180.02562 * 3 2 1 5 5 N 1.41710 * 107.45497 * 359.75465 * 4 3 2 6 6 C 1.30519 * 107.69340 * 0.41543 * 5 4 3 7 7 N 1.39495 * 125.80351 * 179.86043 * 6 5 4 8 8 C 1.34773 * 119.99772 * 359.68312 * 7 6 5 9 9 O 1.21274 * 120.00118 * 359.73111 * 8 7 6 10 10 C 1.50706 * 120.00081 * 180.02562 * 8 7 6 11 11 N 1.46493 * 109.47128 * 179.72554 * 10 8 7 12 12 C 1.46507 * 120.00066 * 90.00240 * 11 10 8 13 13 C 1.50702 * 109.46955 * 89.99397 * 12 11 10 14 14 H 1.07989 * 120.00220 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99417 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00533 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99689 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47055 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47123 * 120.00026 * 17 15 13 20 20 H 1.48499 * 109.46994 * 240.00176 * 17 15 13 21 21 C 1.34771 * 120.00456 * 269.99867 * 11 10 8 22 22 O 1.21508 * 119.99785 * 0.02562 * 21 11 10 23 23 O 1.34640 * 120.00364 * 180.02562 * 21 11 10 24 24 C 1.45202 * 116.99833 * 179.97438 * 23 21 11 25 25 C 1.52999 * 109.46962 * 59.99961 * 24 23 21 26 26 C 1.52998 * 109.47018 * 180.02562 * 24 23 21 27 27 C 1.53003 * 109.47088 * 299.99923 * 24 23 21 28 28 H 1.09000 * 109.47178 * 269.97611 * 1 2 3 29 29 H 1.09000 * 109.46930 * 29.97390 * 1 2 3 30 30 H 1.08997 * 109.47589 * 149.97246 * 1 2 3 31 31 H 0.96998 * 119.99703 * 179.69248 * 7 6 5 32 32 H 1.09001 * 109.46564 * 299.73030 * 10 8 7 33 33 H 1.08998 * 109.47012 * 59.72084 * 10 8 7 34 34 H 1.08993 * 109.47381 * 209.99784 * 12 11 10 35 35 H 1.09002 * 109.46817 * 330.00021 * 12 11 10 36 36 H 0.97001 * 120.00384 * 179.97438 * 16 15 13 37 37 H 1.09001 * 109.47363 * 60.00029 * 25 24 23 38 38 H 1.09006 * 109.46733 * 179.97438 * 25 24 23 39 39 H 1.08997 * 109.47048 * 299.99440 * 25 24 23 40 40 H 1.08997 * 109.47258 * 59.99296 * 26 24 23 41 41 H 1.08995 * 109.47493 * 180.02562 * 26 24 23 42 42 H 1.09007 * 109.46963 * 300.00255 * 26 24 23 43 43 H 1.09000 * 109.47162 * 60.00390 * 27 24 23 44 44 H 1.09006 * 109.46925 * 180.02562 * 27 24 23 45 45 H 1.09001 * 109.47214 * 299.99930 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0540 0.0000 4 8 3.6143 0.6207 -0.0006 5 7 3.6056 -0.7963 0.0048 6 6 2.3597 -1.1853 -0.0006 7 7 1.9180 -2.5085 -0.0007 8 6 2.8117 -3.5173 -0.0013 9 8 3.9999 -3.2747 -0.0067 10 6 2.3345 -4.9468 -0.0020 11 7 3.4899 -5.8473 -0.0092 12 6 4.0735 -6.3002 1.2560 13 6 3.4001 -7.5761 1.6916 14 1 2.6162 -8.0068 1.0864 15 6 3.7849 -8.1935 2.8628 16 7 4.7391 -7.6688 3.6001 17 14 2.9507 -9.7755 3.4024 18 1 1.9179 -10.1555 2.4052 19 1 3.9617 -10.8584 3.5044 20 1 2.3096 -9.5704 4.7261 21 6 4.0161 -6.2592 -1.1795 22 8 3.5324 -5.8833 -2.2289 23 8 5.0777 -7.0873 -1.1861 24 6 5.5914 -7.4903 -2.4830 25 6 6.0318 -6.2510 -3.2647 26 6 6.7879 -8.4240 -2.2900 27 6 4.4952 -8.2211 -3.2610 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 0.9676 -2.7024 -0.0005 32 1 1.7361 -5.1304 0.8904 33 1 1.7279 -5.1269 -0.8895 34 1 5.1399 -6.4801 1.1205 35 1 3.9282 -5.5343 2.0179 36 1 5.0096 -8.1030 4.4243 37 1 6.8127 -5.7303 -2.7105 38 1 6.4178 -6.5536 -4.2382 39 1 5.1790 -5.5862 -3.4023 40 1 6.4738 -9.3068 -1.7332 41 1 7.1738 -8.7263 -3.2635 42 1 7.5690 -7.9038 -1.7355 43 1 3.6424 -7.5562 -3.3986 44 1 4.8809 -8.5241 -4.2345 45 1 4.1814 -9.1040 -2.7042 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184845057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:42 Heat of formation + Delta-G solvation = -15.172759 kcal Electronic energy + Delta-G solvation = -30651.933260 eV Core-core repulsion = 26288.939623 eV Total energy + Delta-G solvation = -4362.993637 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.44853 -40.33575 -39.52842 -36.98532 -35.52766 -34.94103 -34.00030 -33.41869 -32.64674 -31.70555 -29.06233 -28.65616 -27.08495 -27.05817 -26.80428 -23.93011 -23.11891 -21.67162 -21.18200 -20.29039 -18.90078 -18.34073 -17.33244 -17.05400 -16.45363 -16.34812 -16.17427 -15.76150 -15.28872 -15.06398 -14.87178 -14.48113 -14.41258 -14.08688 -13.77129 -13.71089 -13.61111 -13.34346 -12.96177 -12.49188 -12.34392 -12.15959 -12.13410 -11.89038 -11.67782 -11.65701 -11.58653 -11.52220 -11.36636 -11.14696 -11.02003 -10.84226 -10.81717 -10.76130 -10.27254 -10.15997 -9.84596 -9.76024 -9.46204 -9.41089 -8.56066 -8.01862 -6.16390 -4.23732 0.55069 1.68889 1.96386 2.71466 2.72856 2.86358 3.02734 3.21248 3.29858 3.32798 3.48772 3.90613 4.30154 4.55088 4.56306 4.66922 4.85490 4.91282 5.07929 5.12351 5.17590 5.25184 5.30613 5.31592 5.39931 5.50766 5.74326 5.80018 5.92965 5.96034 5.99709 6.08636 6.16971 6.27491 6.39899 6.58854 6.60129 6.69838 7.05640 7.16163 7.28166 7.42846 7.76314 7.93275 8.05278 8.11922 8.78011 9.04187 9.42846 10.91268 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009308 B = 0.003749 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.425044 B = 7466.354284 C = 9452.959181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.079 3.921 3 N -0.276 5.276 4 O 0.017 5.983 5 N -0.267 5.267 6 C 0.293 3.707 7 N -0.635 5.635 8 C 0.487 3.513 9 O -0.460 6.460 10 C 0.129 3.871 11 N -0.567 5.567 12 C 0.247 3.753 13 C -0.536 4.536 14 H 0.062 0.938 15 C 0.065 3.935 16 N -0.889 5.889 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.283 1.283 21 C 0.665 3.335 22 O -0.599 6.599 23 O -0.337 6.337 24 C 0.132 3.868 25 C -0.180 4.180 26 C -0.139 4.139 27 C -0.179 4.179 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.426 0.574 32 H 0.126 0.874 33 H 0.116 0.884 34 H 0.048 0.952 35 H 0.035 0.965 36 H 0.265 0.735 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.809 7.065 -9.261 15.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 N -0.020 5.020 4 O -0.116 6.116 5 N -0.023 5.023 6 C 0.018 3.982 7 N -0.293 5.293 8 C 0.272 3.728 9 O -0.325 6.325 10 C 0.001 3.999 11 N -0.303 5.303 12 C 0.128 3.872 13 C -0.575 4.575 14 H 0.080 0.920 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.209 1.209 21 C 0.421 3.579 22 O -0.492 6.492 23 O -0.250 6.250 24 C 0.095 3.905 25 C -0.237 4.237 26 C -0.196 4.196 27 C -0.237 4.237 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.264 0.736 32 H 0.143 0.857 33 H 0.133 0.867 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.600 8.059 -9.416 14.539 hybrid contribution -1.376 -1.405 0.458 2.019 sum -8.977 6.654 -8.958 14.321 Atomic orbital electron populations 1.20579 0.83822 1.05453 1.05112 1.25653 0.99622 0.87525 0.98070 1.79654 0.90450 1.19402 1.12527 1.93364 1.18204 1.13978 1.86026 1.80788 1.13396 0.89089 1.19046 1.22886 0.90178 0.87724 0.97421 1.43436 1.12073 1.00261 1.73541 1.22444 0.86814 0.88062 0.75494 1.90861 1.15797 1.83588 1.42287 1.21029 0.89445 0.83068 1.06314 1.46661 1.31152 1.45741 1.06742 1.19479 0.95080 0.94807 0.77822 1.21469 1.20723 1.08391 1.06927 0.92009 1.24929 0.94962 0.97647 0.96235 1.69950 1.28613 1.39697 1.14420 0.86456 0.79430 0.83177 0.78436 1.19689 1.20836 1.20915 1.17843 0.78971 0.77335 0.83746 1.90775 1.64834 1.62609 1.31018 1.86495 1.44054 1.60668 1.33820 1.21947 0.93649 0.94430 0.80472 1.22489 1.03192 0.98402 0.99643 1.21812 0.96291 0.99279 1.02252 1.22482 1.00251 1.01313 0.99621 0.88187 0.88703 0.88887 0.73570 0.85664 0.86659 0.93442 0.94689 0.92564 0.92346 0.91877 0.89554 0.91301 0.90846 0.91551 0.89530 0.91929 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.38 10.37 36.00 0.37 -0.01 16 2 C 0.08 0.80 7.40 -80.31 -0.59 0.20 16 3 N -0.28 -3.65 12.94 34.80 0.45 -3.20 16 4 O 0.02 0.29 13.64 12.20 0.17 0.45 16 5 N -0.27 -4.74 11.15 32.42 0.36 -4.38 16 6 C 0.29 3.91 7.97 -153.33 -1.22 2.69 16 7 N -0.63 -7.09 5.42 -9.95 -0.05 -7.15 16 8 C 0.49 7.83 7.86 -10.98 -0.09 7.74 16 9 O -0.46 -9.89 15.13 5.56 0.08 -9.81 16 10 C 0.13 1.99 5.89 -5.19 -0.03 1.96 16 11 N -0.57 -11.85 1.94 -182.25 -0.35 -12.20 16 12 C 0.25 6.08 5.17 -5.19 -0.03 6.05 16 13 C -0.54 -13.85 9.39 -34.44 -0.32 -14.18 16 14 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 15 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -24.96 13.29 55.43 0.74 -24.22 16 17 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 C 0.67 14.28 7.70 54.05 0.42 14.69 16 22 O -0.60 -12.46 11.46 -19.28 -0.22 -12.68 16 23 O -0.34 -7.24 8.71 -40.32 -0.35 -7.59 16 24 C 0.13 2.25 1.13 -90.62 -0.10 2.15 16 25 C -0.18 -2.89 8.37 37.16 0.31 -2.57 16 26 C -0.14 -1.99 8.85 37.16 0.33 -1.66 16 27 C -0.18 -2.77 8.37 37.16 0.31 -2.46 16 28 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.16 7.80 -51.93 -0.40 -0.25 16 31 H 0.43 2.37 8.37 -40.82 -0.34 2.03 16 32 H 0.13 1.61 8.07 -51.93 -0.42 1.19 16 33 H 0.12 1.49 7.42 -51.93 -0.39 1.11 16 34 H 0.05 1.31 7.37 -51.93 -0.38 0.93 16 35 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.09 1.57 5.88 -51.93 -0.31 1.27 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.09 1.48 5.88 -51.93 -0.31 1.18 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 386.74 15.07 5.83 5.83 Total: -1.00 -36.71 386.74 -5.43 -42.14 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.31 Total: 1.30 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: -0.74 Total: 16.24 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 1.14 Total: -51.15 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.32 Total: -29.63 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.71 -5.43 -42.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184845057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.970 kcal (2) G-P(sol) polarization free energy of solvation -36.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds