Wall clock time and date at job start Sat Apr 11 2020 05:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29858 * 125.73880 * 2 1 4 4 O 1.41676 * 107.92972 * 180.02562 * 3 2 1 5 5 N 1.41710 * 107.45497 * 359.75465 * 4 3 2 6 6 C 1.30519 * 107.69340 * 0.41543 * 5 4 3 7 7 N 1.39495 * 125.80351 * 179.86043 * 6 5 4 8 8 C 1.34773 * 119.99772 * 359.68312 * 7 6 5 9 9 O 1.21274 * 120.00118 * 359.73111 * 8 7 6 10 10 C 1.50706 * 120.00081 * 180.02562 * 8 7 6 11 11 N 1.46493 * 109.47128 * 179.72554 * 10 8 7 12 12 C 1.46507 * 120.00066 * 90.00240 * 11 10 8 13 13 C 1.50702 * 109.46955 * 89.99397 * 12 11 10 14 14 H 1.07989 * 120.00220 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99417 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00533 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99689 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47055 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47123 * 120.00026 * 17 15 13 20 20 H 1.48499 * 109.46994 * 240.00176 * 17 15 13 21 21 C 1.34771 * 120.00456 * 269.99867 * 11 10 8 22 22 O 1.21508 * 119.99785 * 0.02562 * 21 11 10 23 23 O 1.34640 * 120.00364 * 180.02562 * 21 11 10 24 24 C 1.45202 * 116.99833 * 179.97438 * 23 21 11 25 25 C 1.52999 * 109.46962 * 59.99961 * 24 23 21 26 26 C 1.52998 * 109.47018 * 180.02562 * 24 23 21 27 27 C 1.53003 * 109.47088 * 299.99923 * 24 23 21 28 28 H 1.09000 * 109.47178 * 269.97611 * 1 2 3 29 29 H 1.09000 * 109.46930 * 29.97390 * 1 2 3 30 30 H 1.08997 * 109.47589 * 149.97246 * 1 2 3 31 31 H 0.96998 * 119.99703 * 179.69248 * 7 6 5 32 32 H 1.09001 * 109.46564 * 299.73030 * 10 8 7 33 33 H 1.08998 * 109.47012 * 59.72084 * 10 8 7 34 34 H 1.08993 * 109.47381 * 209.99784 * 12 11 10 35 35 H 1.09002 * 109.46817 * 330.00021 * 12 11 10 36 36 H 0.97001 * 120.00384 * 179.97438 * 16 15 13 37 37 H 1.09001 * 109.47363 * 60.00029 * 25 24 23 38 38 H 1.09006 * 109.46733 * 179.97438 * 25 24 23 39 39 H 1.08997 * 109.47048 * 299.99440 * 25 24 23 40 40 H 1.08997 * 109.47258 * 59.99296 * 26 24 23 41 41 H 1.08995 * 109.47493 * 180.02562 * 26 24 23 42 42 H 1.09007 * 109.46963 * 300.00255 * 26 24 23 43 43 H 1.09000 * 109.47162 * 60.00390 * 27 24 23 44 44 H 1.09006 * 109.46925 * 180.02562 * 27 24 23 45 45 H 1.09001 * 109.47214 * 299.99930 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0540 0.0000 4 8 3.6143 0.6207 -0.0006 5 7 3.6056 -0.7963 0.0048 6 6 2.3597 -1.1853 -0.0006 7 7 1.9180 -2.5085 -0.0007 8 6 2.8117 -3.5173 -0.0013 9 8 3.9999 -3.2747 -0.0067 10 6 2.3345 -4.9468 -0.0020 11 7 3.4899 -5.8473 -0.0092 12 6 4.0735 -6.3002 1.2560 13 6 3.4001 -7.5761 1.6916 14 1 2.6162 -8.0068 1.0864 15 6 3.7849 -8.1935 2.8628 16 7 4.7391 -7.6688 3.6001 17 14 2.9507 -9.7755 3.4024 18 1 1.9179 -10.1555 2.4052 19 1 3.9617 -10.8584 3.5044 20 1 2.3096 -9.5704 4.7261 21 6 4.0161 -6.2592 -1.1795 22 8 3.5324 -5.8833 -2.2289 23 8 5.0777 -7.0873 -1.1861 24 6 5.5914 -7.4903 -2.4830 25 6 6.0318 -6.2510 -3.2647 26 6 6.7879 -8.4240 -2.2900 27 6 4.4952 -8.2211 -3.2610 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 0.9676 -2.7024 -0.0005 32 1 1.7361 -5.1304 0.8904 33 1 1.7279 -5.1269 -0.8895 34 1 5.1399 -6.4801 1.1205 35 1 3.9282 -5.5343 2.0179 36 1 5.0096 -8.1030 4.4243 37 1 6.8127 -5.7303 -2.7105 38 1 6.4178 -6.5536 -4.2382 39 1 5.1790 -5.5862 -3.4023 40 1 6.4738 -9.3068 -1.7332 41 1 7.1738 -8.7263 -3.2635 42 1 7.5690 -7.9038 -1.7355 43 1 3.6424 -7.5562 -3.3986 44 1 4.8809 -8.5241 -4.2345 45 1 4.1814 -9.1040 -2.7042 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184845057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:41 Heat of formation + Delta-G solvation = -41.178649 kcal Electronic energy + Delta-G solvation = -30653.060960 eV Core-core repulsion = 26288.939623 eV Total energy + Delta-G solvation = -4364.121337 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.53915 -41.81720 -40.84616 -38.45630 -36.82783 -36.54976 -34.91508 -34.84957 -34.54936 -32.90646 -30.23686 -29.67045 -28.55590 -28.32470 -28.25565 -25.13394 -25.03329 -22.93253 -22.27059 -21.50428 -20.32166 -19.50118 -18.94986 -18.53150 -18.13018 -17.69576 -17.43595 -16.98087 -16.73103 -16.51363 -16.30291 -16.04631 -15.53657 -15.18924 -15.12062 -14.95067 -14.39069 -14.34850 -14.23073 -13.90605 -13.60151 -13.47947 -13.25785 -13.16170 -12.99264 -12.94150 -12.88431 -12.80365 -12.74488 -12.69509 -12.54163 -12.47887 -12.27104 -11.99724 -11.82338 -11.73326 -11.45605 -11.27602 -11.01520 -10.60553 -10.57761 -9.71266 -8.18533 -6.34165 -0.47034 0.66665 0.81885 1.39400 1.44264 1.47150 1.52805 1.58559 1.76310 1.92015 2.03076 2.42294 2.88489 3.04304 3.13357 3.57536 3.81123 3.85843 4.00309 4.02727 4.07609 4.12403 4.32947 4.57063 4.64503 4.67837 4.69456 4.72797 4.75368 4.77584 4.83287 4.86559 4.89562 5.10867 5.13996 5.21060 5.32234 5.38010 5.52108 5.57275 5.65000 5.75056 6.03121 6.16792 6.40486 6.76189 6.78749 7.33298 7.45652 8.89393 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009308 B = 0.003749 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.425044 B = 7466.354284 C = 9452.959181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.115 3.885 3 N -0.298 5.298 4 O -0.025 6.025 5 N -0.327 5.327 6 C 0.296 3.704 7 N -0.604 5.604 8 C 0.491 3.509 9 O -0.522 6.522 10 C 0.124 3.876 11 N -0.575 5.575 12 C 0.269 3.731 13 C -0.538 4.538 14 H 0.067 0.933 15 C 0.015 3.985 16 N -0.928 5.928 17 Si 0.967 3.033 18 H -0.260 1.260 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.658 3.342 22 O -0.597 6.597 23 O -0.368 6.368 24 C 0.114 3.886 25 C -0.172 4.172 26 C -0.135 4.135 27 C -0.171 4.171 28 H 0.126 0.874 29 H 0.109 0.891 30 H 0.128 0.872 31 H 0.455 0.545 32 H 0.155 0.845 33 H 0.147 0.853 34 H 0.005 0.995 35 H 0.017 0.983 36 H 0.266 0.734 37 H 0.044 0.956 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.112 0.888 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.183 5.759 -10.350 17.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.073 4.073 3 N -0.047 5.047 4 O -0.150 6.150 5 N -0.085 5.085 6 C 0.020 3.980 7 N -0.265 5.265 8 C 0.277 3.723 9 O -0.392 6.392 10 C -0.002 4.002 11 N -0.311 5.311 12 C 0.149 3.851 13 C -0.577 4.577 14 H 0.085 0.915 15 C -0.185 4.185 16 N -0.568 5.568 17 Si 0.792 3.208 18 H -0.184 1.184 19 H -0.211 1.211 20 H -0.201 1.201 21 C 0.413 3.587 22 O -0.490 6.490 23 O -0.282 6.282 24 C 0.078 3.922 25 C -0.229 4.229 26 C -0.192 4.192 27 C -0.228 4.228 28 H 0.144 0.856 29 H 0.128 0.872 30 H 0.146 0.854 31 H 0.300 0.700 32 H 0.173 0.827 33 H 0.165 0.835 34 H 0.023 0.977 35 H 0.035 0.965 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.118 0.882 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.131 0.869 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.116 0.884 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.019 6.788 -10.534 16.687 hybrid contribution -0.413 -0.977 0.733 1.289 sum -11.432 5.811 -9.801 16.140 Atomic orbital electron populations 1.21060 0.78750 1.07926 1.07399 1.26531 1.01737 0.84971 0.94109 1.79652 0.89204 1.20461 1.15404 1.93329 1.20757 1.13374 1.87562 1.80713 1.16373 0.90048 1.21389 1.23292 0.90055 0.88962 0.95672 1.43061 1.13010 0.98737 1.71716 1.22574 0.86339 0.89124 0.74280 1.90858 1.18558 1.84501 1.45272 1.21465 0.87988 0.81522 1.09194 1.46644 1.32447 1.46712 1.05325 1.18904 0.93021 0.94242 0.78972 1.21680 1.20514 1.08591 1.06870 0.91499 1.25804 0.95438 1.00951 0.96317 1.70087 1.30245 1.41439 1.14984 0.85372 0.78414 0.78664 0.78373 1.18397 1.21148 1.20090 1.18018 0.79155 0.77529 0.83955 1.90759 1.64938 1.62678 1.30644 1.86486 1.44180 1.60736 1.36811 1.22472 0.95053 0.95380 0.79297 1.22412 1.01751 0.97567 1.01197 1.21860 0.94908 0.98148 1.04266 1.22401 0.99066 1.00294 1.01005 0.85565 0.87244 0.85372 0.70030 0.82736 0.83534 0.97692 0.96462 0.92480 0.93682 0.88216 0.92025 0.91951 0.86942 0.92567 0.91441 0.88442 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.36 10.37 71.24 0.74 0.38 16 2 C 0.11 2.11 7.40 44.87 0.33 2.44 16 3 N -0.30 -7.88 12.94 -43.80 -0.57 -8.45 16 4 O -0.02 -0.89 13.64 71.00 0.97 0.08 16 5 N -0.33 -12.23 11.15 -51.34 -0.57 -12.80 16 6 C 0.30 7.73 7.97 135.25 1.08 8.80 16 7 N -0.60 -12.41 5.42 -303.80 -1.65 -14.05 16 8 C 0.49 15.66 7.86 87.66 0.69 16.34 16 9 O -0.52 -23.49 15.13 -3.01 -0.05 -23.54 16 10 C 0.12 3.66 5.89 85.64 0.50 4.16 16 11 N -0.57 -24.40 1.94 -960.92 -1.87 -26.26 16 12 C 0.27 13.75 5.17 85.63 0.44 14.19 16 13 C -0.54 -27.93 9.39 25.60 0.24 -27.69 16 14 H 0.07 3.35 7.81 -2.92 -0.02 3.33 16 15 C 0.01 0.77 5.46 84.66 0.46 1.23 16 16 N -0.93 -53.25 13.29 21.45 0.28 -52.96 16 17 Si 0.97 41.19 29.54 68.60 2.03 43.21 16 18 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 19 H -0.29 -12.23 7.11 99.48 0.71 -11.53 16 20 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 21 C 0.66 28.75 7.70 129.79 1.00 29.75 16 22 O -0.60 -24.84 11.46 19.82 0.23 -24.61 16 23 O -0.37 -16.31 8.71 -55.49 -0.48 -16.79 16 24 C 0.11 3.84 1.13 -10.79 -0.01 3.83 16 25 C -0.17 -5.46 8.37 71.98 0.60 -4.86 16 26 C -0.13 -3.72 8.85 71.98 0.64 -3.08 16 27 C -0.17 -5.00 8.37 71.98 0.60 -4.40 16 28 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.13 -0.34 7.80 -2.39 -0.02 -0.36 16 31 H 0.45 3.30 8.37 -92.71 -0.78 2.52 16 32 H 0.16 3.60 8.07 -2.39 -0.02 3.58 16 33 H 0.15 3.40 7.42 -2.39 -0.02 3.39 16 34 H 0.00 0.29 7.37 -2.39 -0.02 0.27 16 35 H 0.02 0.93 8.07 -2.39 -0.02 0.91 16 36 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 37 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 39 H 0.06 2.26 5.88 -2.39 -0.01 2.25 16 40 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 43 H 0.07 2.24 5.88 -2.39 -0.01 2.23 16 44 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 45 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -87.76 386.74 5.89 -81.87 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.26 Total: 13.20 kcal Atomic # 6 Polarization: 33.79 SS G_CDS: 7.32 Total: 41.11 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -4.37 Total: -114.53 kcal Atomic # 8 Polarization: -65.53 SS G_CDS: 0.67 Total: -64.86 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.21 kcal Total: -87.76 5.89 -81.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184845057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.689 kcal (2) G-P(sol) polarization free energy of solvation -87.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds