Wall clock time and date at job start Sat Apr 11 2020 06:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50705 * 109.46667 * 2 1 4 4 N 1.29939 * 126.28759 * 270.01886 * 3 2 1 5 5 O 1.21301 * 110.25386 * 179.68273 * 4 3 2 6 6 C 1.33643 * 109.80692 * 0.47300 * 5 4 3 7 7 C 1.50699 * 126.54973 * 179.79553 * 6 5 4 8 8 O 1.42903 * 109.47126 * 269.68950 * 7 6 5 9 9 C 1.42899 * 113.99838 * 180.02562 * 8 7 6 10 10 C 1.50694 * 109.47339 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00089 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00299 * 179.97438 * 10 9 8 13 13 C 1.46508 * 120.00145 * 180.02562 * 12 10 9 14 14 H 1.09000 * 110.63518 * 31.86046 * 13 12 10 15 15 C 1.54325 * 110.87021 * 268.61173 * 13 12 10 16 16 N 1.47018 * 107.26892 * 219.37145 * 15 13 12 17 17 C 1.36940 * 125.64856 * 178.98909 * 16 15 13 18 18 H 1.08001 * 119.99635 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00209 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99618 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00150 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46588 * 90.00047 * 21 19 17 23 23 H 1.48497 * 109.47222 * 209.99743 * 21 19 17 24 24 H 1.48497 * 109.46923 * 330.00170 * 21 19 17 25 25 C 1.47423 * 108.70681 * 358.94202 * 16 15 13 26 26 C 1.54914 * 104.83031 * 24.12703 * 25 16 15 27 27 H 1.09002 * 111.00586 * 204.91807 * 26 25 16 28 28 O 1.42901 * 111.03638 * 81.08079 * 26 25 16 29 29 N 1.31128 * 106.90069 * 359.53858 * 6 5 4 30 30 H 1.08994 * 109.47203 * 299.99950 * 1 2 3 31 31 H 1.08998 * 109.46961 * 60.00587 * 1 2 3 32 32 H 1.09003 * 109.46831 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47203 * 240.00050 * 2 1 3 34 34 H 1.08998 * 109.46961 * 119.99413 * 2 1 3 35 35 H 1.09002 * 109.47256 * 149.68618 * 7 6 5 36 36 H 1.09000 * 109.47089 * 29.68824 * 7 6 5 37 37 H 1.09007 * 109.47395 * 59.99854 * 9 8 7 38 38 H 1.09002 * 109.47272 * 300.00382 * 9 8 7 39 39 H 0.97001 * 119.99906 * 0.02562 * 12 10 9 40 40 H 1.08992 * 109.88412 * 338.79064 * 15 13 12 41 41 H 1.08999 * 109.87974 * 99.95730 * 15 13 12 42 42 H 0.97000 * 119.99811 * 180.02562 * 20 19 17 43 43 H 1.08998 * 110.36740 * 265.29591 * 25 16 15 44 44 H 1.08994 * 110.37022 * 142.96739 * 25 16 15 45 45 H 0.96698 * 113.99847 * 64.60362 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2882 2.1461 -1.0474 5 8 2.6709 3.2473 -0.7124 6 6 2.7060 3.3283 0.6212 7 6 3.1281 4.5230 1.4370 8 8 4.5319 4.4519 1.6946 9 6 5.0372 5.5434 2.4662 10 6 6.5188 5.3663 2.6768 11 8 7.0863 4.4008 2.2115 12 7 7.2135 6.2815 3.3813 13 6 8.6540 6.1096 3.5856 14 1 9.1049 5.6015 2.7332 15 6 8.9359 5.3389 4.8925 16 7 10.1104 5.9607 5.5213 17 6 10.6727 5.5823 6.7112 18 1 10.2501 4.7613 7.2712 19 6 11.7852 6.2548 7.1980 20 7 12.2999 7.2558 6.5157 21 14 12.5519 5.7392 8.8216 22 1 13.5922 4.7091 8.5726 23 1 13.1713 6.9207 9.4739 24 1 11.5017 5.1777 9.7086 25 6 10.5833 7.0582 4.6581 26 6 9.3403 7.4786 3.8346 27 1 9.6341 7.9451 2.8942 28 8 8.4934 8.3462 4.5909 29 7 2.2976 2.1714 1.0842 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 2.5850 4.5278 2.3821 36 1 2.9057 5.4365 0.8854 37 1 4.5337 5.5690 3.4327 38 1 4.8542 6.4783 1.9365 39 1 6.7596 7.0539 3.7532 40 1 8.0764 5.4121 5.5588 41 1 9.1456 4.2930 4.6682 42 1 13.0775 7.7255 6.8557 43 1 11.3751 6.7065 3.9968 44 1 10.9366 7.8923 5.2642 45 1 8.8983 9.1958 4.8130 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220731804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:00 Heat of formation + Delta-G solvation = -21.352004 kcal Electronic energy + Delta-G solvation = -28816.938547 eV Core-core repulsion = 24453.676958 eV Total energy + Delta-G solvation = -4363.261589 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.93701 -39.89809 -38.47618 -37.52422 -36.70544 -34.75403 -34.22747 -34.01076 -32.08765 -31.75395 -29.58039 -28.44894 -27.44421 -26.32613 -25.48457 -24.35710 -23.54672 -21.55613 -20.96745 -20.48726 -19.83789 -18.57931 -18.04539 -17.50903 -17.15794 -16.97958 -16.62194 -16.46285 -15.74647 -15.23290 -15.12292 -14.82368 -14.62446 -14.44352 -14.19656 -13.83270 -13.44580 -13.13970 -13.04782 -12.94201 -12.61936 -12.46440 -12.38229 -12.19125 -11.77446 -11.75662 -11.69748 -11.36466 -11.33248 -11.11497 -10.87855 -10.66353 -10.37946 -10.36685 -10.28540 -10.06208 -9.86255 -9.70284 -9.27264 -8.76847 -8.70134 -6.87398 -5.71541 -3.11397 0.66296 1.78167 2.25865 2.68797 2.86463 3.21825 3.38605 3.43805 3.45436 3.62352 3.91704 4.36890 4.46259 4.50312 4.56674 4.67673 4.71591 4.76025 4.77205 4.88072 4.94766 4.96624 5.31460 5.33117 5.34958 5.38465 5.46973 5.47104 5.61200 5.68961 5.70786 5.89207 6.01830 6.24440 6.39247 6.48001 6.68167 6.90854 7.23403 7.53711 7.67845 7.73763 7.80059 8.08093 8.28706 8.37750 9.16115 9.77006 10.39995 11.33601 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021854 B = 0.001813 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.917335 B =15436.393830 C =16261.624160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.034 4.034 3 C 0.171 3.829 4 N -0.378 5.378 5 O 0.088 5.912 6 C 0.186 3.814 7 C 0.156 3.844 8 O -0.355 6.355 9 C 0.047 3.953 10 C 0.509 3.491 11 O -0.523 6.523 12 N -0.705 5.705 13 C 0.144 3.856 14 H 0.102 0.898 15 C 0.130 3.870 16 N -0.597 5.597 17 C -0.216 4.216 18 H 0.078 0.922 19 C -0.013 4.013 20 N -0.927 5.927 21 Si 0.917 3.083 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.126 3.874 26 C 0.068 3.932 27 H 0.059 0.941 28 O -0.562 6.562 29 N -0.459 5.459 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.409 0.591 40 H 0.030 0.970 41 H 0.028 0.972 42 H 0.252 0.748 43 H 0.023 0.977 44 H 0.116 0.884 45 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.797 -1.570 -12.323 25.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.073 4.073 3 C -0.102 4.102 4 N -0.084 5.084 5 O 0.028 5.972 6 C -0.035 4.035 7 C 0.077 3.923 8 O -0.272 6.272 9 C -0.032 4.032 10 C 0.293 3.707 11 O -0.398 6.398 12 N -0.358 5.358 13 C 0.039 3.961 14 H 0.120 0.880 15 C 0.003 3.997 16 N -0.323 5.323 17 C -0.345 4.345 18 H 0.096 0.904 19 C -0.208 4.208 20 N -0.576 5.576 21 Si 0.748 3.252 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.000 4.000 26 C 0.007 3.993 27 H 0.077 0.923 28 O -0.369 6.369 29 N -0.194 5.194 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.244 0.756 40 H 0.048 0.952 41 H 0.046 0.954 42 H 0.063 0.937 43 H 0.041 0.959 44 H 0.133 0.867 45 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -22.698 -3.474 -13.150 26.461 hybrid contribution 0.652 0.861 1.159 1.584 sum -22.046 -2.613 -11.991 25.232 Atomic orbital electron populations 1.21738 0.93181 1.02942 1.02628 1.19972 0.96828 0.85478 1.05010 1.25940 1.00267 1.00692 0.83300 1.74644 1.17304 0.92599 1.23902 1.85306 1.60372 1.26958 1.24559 1.28151 0.96798 0.96419 0.82168 1.20588 0.84296 0.89980 0.97407 1.88072 1.19863 1.45681 1.73574 1.22303 0.93524 0.90343 0.97078 1.20072 0.88167 0.83346 0.79070 1.90759 1.70569 1.29573 1.48877 1.45682 1.09589 1.26110 1.54418 1.22169 0.78906 0.95837 0.99191 0.87961 1.21595 0.91351 0.95219 0.91494 1.44286 1.30475 1.35819 1.21705 1.19104 1.07962 1.12480 0.94909 0.90381 1.24762 0.98283 0.98494 0.99235 1.69715 1.25192 1.24121 1.38613 0.86025 0.79080 0.77331 0.82797 1.21625 1.21655 1.20693 1.22623 0.90311 0.94778 0.92254 1.23584 0.92833 0.89084 0.93779 0.92303 1.86204 1.43520 1.31024 1.76120 1.71900 1.16721 1.01340 1.29455 0.91935 0.92353 0.90916 0.88921 0.88335 0.87938 0.88816 0.89327 0.89434 0.75576 0.95185 0.95377 0.93718 0.95931 0.86656 0.77185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.16 0.37 -0.50 16 2 C -0.03 -0.26 6.56 -27.88 -0.18 -0.44 16 3 C 0.17 1.90 7.47 -156.37 -1.17 0.73 16 4 N -0.38 -4.59 12.16 30.90 0.38 -4.22 16 5 O 0.09 1.01 11.31 18.10 0.20 1.22 16 6 C 0.19 1.96 8.14 -13.06 -0.11 1.85 16 7 C 0.16 1.13 6.56 36.01 0.24 1.37 16 8 O -0.35 -4.10 9.86 -55.14 -0.54 -4.64 16 9 C 0.05 0.44 6.42 36.00 0.23 0.67 16 10 C 0.51 7.45 7.91 -10.99 -0.09 7.36 16 11 O -0.52 -10.27 16.14 -14.36 -0.23 -10.51 16 12 N -0.70 -10.11 5.08 -52.03 -0.26 -10.38 16 13 C 0.14 2.59 3.20 -66.09 -0.21 2.38 16 14 H 0.10 1.92 7.55 -51.93 -0.39 1.53 16 15 C 0.13 2.85 7.00 -3.07 -0.02 2.83 16 16 N -0.60 -15.14 3.39 -170.08 -0.58 -15.72 16 17 C -0.22 -6.02 10.27 -15.06 -0.15 -6.17 16 18 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 19 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 20 N -0.93 -26.16 10.09 55.49 0.56 -25.60 16 21 Si 0.92 21.95 29.55 -169.99 -5.02 16.93 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C 0.13 2.88 5.62 -2.53 -0.01 2.87 16 26 C 0.07 1.18 4.28 -24.58 -0.11 1.07 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 O -0.56 -8.91 12.24 -35.23 -0.43 -9.34 16 29 N -0.46 -5.47 11.55 -9.87 -0.11 -5.59 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.41 4.95 7.60 -40.82 -0.31 4.64 16 40 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.12 2.91 5.87 -51.93 -0.30 2.60 16 45 H 0.38 4.88 9.12 45.56 0.42 5.30 16 LS Contribution 383.53 15.07 5.78 5.78 Total: -1.00 -36.66 383.53 -7.21 -43.86 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.63 Total: 4.62 kcal Atomic # 6 Polarization: 14.89 SS G_CDS: -1.31 Total: 13.58 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -0.02 Total: -61.50 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -1.00 Total: -23.27 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.66 -7.21 -43.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220731804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.512 kcal (2) G-P(sol) polarization free energy of solvation -36.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds