Wall clock time and date at job start Sat Apr 11 2020 05:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50705 * 109.46667 * 2 1 4 4 N 1.29939 * 126.28759 * 270.01886 * 3 2 1 5 5 O 1.21301 * 110.25386 * 179.68273 * 4 3 2 6 6 C 1.33643 * 109.80692 * 0.47300 * 5 4 3 7 7 C 1.50699 * 126.54973 * 179.79553 * 6 5 4 8 8 O 1.42903 * 109.47126 * 269.68950 * 7 6 5 9 9 C 1.42899 * 113.99838 * 180.02562 * 8 7 6 10 10 C 1.50694 * 109.47339 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00089 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00299 * 179.97438 * 10 9 8 13 13 C 1.46508 * 120.00145 * 180.02562 * 12 10 9 14 14 H 1.09000 * 110.63518 * 31.86046 * 13 12 10 15 15 C 1.54325 * 110.87021 * 268.61173 * 13 12 10 16 16 N 1.47018 * 107.26892 * 219.37145 * 15 13 12 17 17 C 1.36940 * 125.64856 * 178.98909 * 16 15 13 18 18 H 1.08001 * 119.99635 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00209 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99618 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00150 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46588 * 90.00047 * 21 19 17 23 23 H 1.48497 * 109.47222 * 209.99743 * 21 19 17 24 24 H 1.48497 * 109.46923 * 330.00170 * 21 19 17 25 25 C 1.47423 * 108.70681 * 358.94202 * 16 15 13 26 26 C 1.54914 * 104.83031 * 24.12703 * 25 16 15 27 27 H 1.09002 * 111.00586 * 204.91807 * 26 25 16 28 28 O 1.42901 * 111.03638 * 81.08079 * 26 25 16 29 29 N 1.31128 * 106.90069 * 359.53858 * 6 5 4 30 30 H 1.08994 * 109.47203 * 299.99950 * 1 2 3 31 31 H 1.08998 * 109.46961 * 60.00587 * 1 2 3 32 32 H 1.09003 * 109.46831 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47203 * 240.00050 * 2 1 3 34 34 H 1.08998 * 109.46961 * 119.99413 * 2 1 3 35 35 H 1.09002 * 109.47256 * 149.68618 * 7 6 5 36 36 H 1.09000 * 109.47089 * 29.68824 * 7 6 5 37 37 H 1.09007 * 109.47395 * 59.99854 * 9 8 7 38 38 H 1.09002 * 109.47272 * 300.00382 * 9 8 7 39 39 H 0.97001 * 119.99906 * 0.02562 * 12 10 9 40 40 H 1.08992 * 109.88412 * 338.79064 * 15 13 12 41 41 H 1.08999 * 109.87974 * 99.95730 * 15 13 12 42 42 H 0.97000 * 119.99811 * 180.02562 * 20 19 17 43 43 H 1.08998 * 110.36740 * 265.29591 * 25 16 15 44 44 H 1.08994 * 110.37022 * 142.96739 * 25 16 15 45 45 H 0.96698 * 113.99847 * 64.60362 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2882 2.1461 -1.0474 5 8 2.6709 3.2473 -0.7124 6 6 2.7060 3.3283 0.6212 7 6 3.1281 4.5230 1.4370 8 8 4.5319 4.4519 1.6946 9 6 5.0372 5.5434 2.4662 10 6 6.5188 5.3663 2.6768 11 8 7.0863 4.4008 2.2115 12 7 7.2135 6.2815 3.3813 13 6 8.6540 6.1096 3.5856 14 1 9.1049 5.6015 2.7332 15 6 8.9359 5.3389 4.8925 16 7 10.1104 5.9607 5.5213 17 6 10.6727 5.5823 6.7112 18 1 10.2501 4.7613 7.2712 19 6 11.7852 6.2548 7.1980 20 7 12.2999 7.2558 6.5157 21 14 12.5519 5.7392 8.8216 22 1 13.5922 4.7091 8.5726 23 1 13.1713 6.9207 9.4739 24 1 11.5017 5.1777 9.7086 25 6 10.5833 7.0582 4.6581 26 6 9.3403 7.4786 3.8346 27 1 9.6341 7.9451 2.8942 28 8 8.4934 8.3462 4.5909 29 7 2.2976 2.1714 1.0842 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 2.5850 4.5278 2.3821 36 1 2.9057 5.4365 0.8854 37 1 4.5337 5.5690 3.4327 38 1 4.8542 6.4783 1.9365 39 1 6.7596 7.0539 3.7532 40 1 8.0764 5.4121 5.5588 41 1 9.1456 4.2930 4.6682 42 1 13.0775 7.7255 6.8557 43 1 11.3751 6.7065 3.9968 44 1 10.9366 7.8923 5.2642 45 1 8.8983 9.1958 4.8130 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220731804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:59 Heat of formation + Delta-G solvation = -52.699853 kcal Electronic energy + Delta-G solvation = -28818.297891 eV Core-core repulsion = 24453.676958 eV Total energy + Delta-G solvation = -4364.620934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.74538 -41.09619 -39.65128 -38.64122 -37.46527 -36.33667 -35.44670 -34.93234 -33.62800 -32.72713 -30.82104 -29.80157 -28.74830 -27.52628 -26.15943 -26.13311 -24.26834 -22.52315 -22.23261 -21.93197 -21.30441 -19.39224 -19.28714 -18.77378 -18.29775 -18.10943 -17.64103 -17.30005 -16.86011 -16.60328 -16.41923 -16.00540 -15.81196 -15.42884 -15.36825 -14.97594 -14.65247 -14.45580 -14.27486 -14.08064 -13.86226 -13.53988 -13.20811 -13.18044 -13.09318 -12.90201 -12.74678 -12.71066 -12.49119 -12.36006 -12.23969 -12.12606 -12.02708 -11.89837 -11.83048 -11.18306 -10.94970 -10.88407 -10.81000 -10.70680 -10.09744 -8.90249 -7.80765 -5.24036 -0.11821 0.99032 1.46580 1.48139 1.53843 1.57033 1.59339 1.93487 2.47329 2.51328 2.90436 3.09974 3.27081 3.30298 3.60182 3.75225 3.84454 3.88964 3.95675 4.10067 4.14785 4.20026 4.27781 4.28974 4.32268 4.39996 4.42078 4.51211 4.70202 4.75027 4.84470 4.86155 4.90393 4.98184 4.98834 5.21466 5.34691 5.45545 5.48693 5.71834 5.81553 6.25924 6.62064 6.92859 7.00748 7.08930 7.28384 7.73277 8.35725 9.21046 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021854 B = 0.001813 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.917335 B =15436.393830 C =16261.624160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.037 4.037 3 C 0.164 3.836 4 N -0.402 5.402 5 O 0.079 5.921 6 C 0.186 3.814 7 C 0.154 3.846 8 O -0.397 6.397 9 C 0.056 3.944 10 C 0.503 3.497 11 O -0.582 6.582 12 N -0.692 5.692 13 C 0.155 3.845 14 H 0.092 0.908 15 C 0.130 3.870 16 N -0.616 5.616 17 C -0.241 4.241 18 H 0.073 0.927 19 C -0.060 4.060 20 N -0.944 5.944 21 Si 0.980 3.020 22 H -0.290 1.290 23 H -0.287 1.287 24 H -0.273 1.273 25 C 0.124 3.876 26 C 0.094 3.906 27 H 0.094 0.906 28 O -0.560 6.560 29 N -0.486 5.486 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.129 0.871 36 H 0.137 0.863 37 H 0.123 0.877 38 H 0.135 0.865 39 H 0.423 0.577 40 H 0.028 0.972 41 H 0.005 0.995 42 H 0.250 0.750 43 H -0.002 1.002 44 H 0.093 0.907 45 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.903 -0.261 -12.192 27.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.076 4.076 3 C -0.109 4.109 4 N -0.111 5.111 5 O 0.021 5.979 6 C -0.035 4.035 7 C 0.077 3.923 8 O -0.316 6.316 9 C -0.023 4.023 10 C 0.291 3.709 11 O -0.461 6.461 12 N -0.346 5.346 13 C 0.048 3.952 14 H 0.110 0.890 15 C 0.003 3.997 16 N -0.342 5.342 17 C -0.370 4.370 18 H 0.091 0.909 19 C -0.253 4.253 20 N -0.594 5.594 21 Si 0.808 3.192 22 H -0.217 1.217 23 H -0.213 1.213 24 H -0.198 1.198 25 C -0.001 4.001 26 C 0.033 3.967 27 H 0.111 0.889 28 O -0.368 6.368 29 N -0.222 5.222 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.147 0.853 36 H 0.154 0.846 37 H 0.140 0.860 38 H 0.153 0.847 39 H 0.262 0.738 40 H 0.046 0.954 41 H 0.023 0.977 42 H 0.059 0.941 43 H 0.016 0.984 44 H 0.111 0.889 45 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -24.848 -2.105 -13.014 28.129 hybrid contribution 1.310 0.427 1.134 1.785 sum -23.538 -1.678 -11.879 26.419 Atomic orbital electron populations 1.21701 0.91821 1.04192 1.02049 1.20187 0.97931 0.83795 1.05686 1.26577 0.99503 1.01799 0.82974 1.74622 1.18594 0.93149 1.24703 1.85265 1.60610 1.26828 1.25190 1.28943 0.95522 0.97025 0.82006 1.21063 0.82455 0.90049 0.98764 1.87990 1.22190 1.47116 1.74256 1.22401 0.89016 0.91457 0.99390 1.21157 0.90533 0.81887 0.77374 1.90740 1.72277 1.31915 1.51141 1.45502 1.07936 1.26776 1.54348 1.21759 0.81531 0.95388 0.96517 0.89011 1.21651 0.90137 0.94558 0.93316 1.44550 1.31317 1.36830 1.21526 1.19387 1.08729 1.12757 0.96151 0.90911 1.25544 0.98709 0.98704 1.02359 1.69937 1.25151 1.24605 1.39674 0.85057 0.78101 0.76835 0.79168 1.21703 1.21330 1.19805 1.22542 0.92474 0.93236 0.91889 1.23228 0.90137 0.89283 0.94061 0.88867 1.86167 1.42910 1.31744 1.76006 1.71918 1.17927 1.02228 1.30085 0.92498 0.92866 0.88734 0.88055 0.87784 0.85346 0.84586 0.85957 0.84745 0.73814 0.95368 0.97672 0.94059 0.98449 0.88937 0.75316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.89 71.98 0.71 -0.79 16 2 C -0.04 -0.54 6.56 29.85 0.20 -0.35 16 3 C 0.16 3.63 7.47 138.46 1.03 4.67 16 4 N -0.40 -9.77 12.16 -60.33 -0.73 -10.50 16 5 O 0.08 1.77 11.31 74.83 0.85 2.61 16 6 C 0.19 3.70 8.14 88.38 0.72 4.42 16 7 C 0.15 1.74 6.56 71.24 0.47 2.21 16 8 O -0.40 -8.16 9.86 -129.94 -1.28 -9.44 16 9 C 0.06 0.81 6.42 71.23 0.46 1.27 16 10 C 0.50 13.80 7.91 87.66 0.69 14.49 16 11 O -0.58 -22.96 16.14 16.00 0.26 -22.70 16 12 N -0.69 -18.34 5.08 -436.91 -2.22 -20.56 16 13 C 0.15 5.46 3.20 46.18 0.15 5.61 16 14 H 0.09 3.48 7.55 -2.39 -0.02 3.46 16 15 C 0.13 5.80 7.00 86.73 0.61 6.41 16 16 N -0.62 -31.96 3.39 -692.01 -2.35 -34.31 16 17 C -0.24 -13.72 10.27 84.03 0.86 -12.86 16 18 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 19 C -0.06 -3.38 5.49 84.86 0.47 -2.92 16 20 N -0.94 -54.06 10.09 21.65 0.22 -53.84 16 21 Si 0.98 45.43 29.55 68.60 2.03 47.46 16 22 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 23 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 25 C 0.12 5.75 5.62 86.86 0.49 6.24 16 26 C 0.09 3.12 4.28 31.99 0.14 3.25 16 27 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 28 O -0.56 -16.24 12.24 -148.98 -1.82 -18.06 16 29 N -0.49 -11.33 11.55 -303.21 -3.50 -14.83 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.42 8.75 7.60 -92.71 -0.70 8.05 16 40 H 0.03 1.26 8.03 -2.39 -0.02 1.24 16 41 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 43 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 44 H 0.09 4.73 5.87 -2.39 -0.01 4.72 16 45 H 0.40 9.07 9.12 -74.06 -0.68 8.39 16 Total: -1.00 -84.30 383.53 -1.91 -86.21 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -0.34 Total: 16.30 kcal Atomic # 6 Polarization: 24.67 SS G_CDS: 6.99 Total: 31.66 kcal Atomic # 7 Polarization: -125.45 SS G_CDS: -8.59 Total: -134.04 kcal Atomic # 8 Polarization: -45.59 SS G_CDS: -2.00 Total: -47.59 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -84.30 -1.91 -86.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220731804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.511 kcal (2) G-P(sol) polarization free energy of solvation -84.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds