Wall clock time and date at job start Sat Apr 11 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.46907 * 2 1 4 4 N 1.34235 * 126.28713 * 265.14729 * 3 2 1 5 5 H 0.97004 * 125.73435 * 0.04235 * 4 3 2 6 6 N 1.39931 * 108.52849 * 180.30692 * 4 3 2 7 7 C 1.30527 * 108.88827 * 359.73030 * 6 4 3 8 8 Cl 1.73605 * 126.00331 * 180.02562 * 7 6 4 9 9 C 1.38070 * 126.27777 * 85.00595 * 3 2 1 10 10 C 1.47385 * 126.42600 * 359.95589 * 9 3 2 11 11 O 1.21605 * 119.99928 * 269.72042 * 10 9 3 12 12 N 1.34781 * 119.99808 * 89.71170 * 10 9 3 13 13 C 1.46918 * 120.62966 * 0.03119 * 12 10 9 14 14 C 1.53199 * 108.77378 * 233.58231 * 13 12 10 15 15 C 1.53047 * 109.30955 * 305.36520 * 14 13 12 16 16 C 1.53038 * 109.53598 * 61.36757 * 15 14 13 17 17 H 1.08994 * 109.52608 * 58.60035 * 16 15 14 18 18 C 1.53004 * 109.49472 * 178.68375 * 16 15 14 19 19 N 1.46504 * 109.46932 * 184.83704 * 18 16 15 20 20 C 1.36934 * 119.99567 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00537 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99798 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00134 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00229 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47228 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.46793 * 299.99987 * 24 22 20 27 27 H 1.48500 * 109.47000 * 60.00079 * 24 22 20 28 28 C 1.46927 * 120.62647 * 180.02562 * 12 10 9 29 29 H 1.09001 * 109.47224 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47158 * 299.99645 * 1 2 3 31 31 H 1.09005 * 109.47513 * 59.99959 * 1 2 3 32 32 H 1.09009 * 109.46551 * 240.00283 * 2 1 3 33 33 H 1.08998 * 109.47187 * 120.00630 * 2 1 3 34 34 H 1.08997 * 109.59316 * 353.36786 * 13 12 10 35 35 H 1.09000 * 109.59273 * 113.65744 * 13 12 10 36 36 H 1.09002 * 109.49647 * 65.31633 * 14 13 12 37 37 H 1.09000 * 109.49788 * 185.38213 * 14 13 12 38 38 H 1.08993 * 109.45887 * 301.34275 * 15 14 13 39 39 H 1.09005 * 109.45837 * 181.38402 * 15 14 13 40 40 H 1.08998 * 109.47524 * 64.83348 * 18 16 15 41 41 H 1.08997 * 109.47093 * 304.83248 * 18 16 15 42 42 H 0.97000 * 119.99825 * 359.97438 * 19 18 16 43 43 H 0.97005 * 119.99717 * 0.02562 * 23 22 20 44 44 H 1.08996 * 109.58795 * 6.63317 * 28 12 10 45 45 H 1.08999 * 109.70325 * 246.26897 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3833 2.1393 -1.0781 5 1 2.3566 1.8312 -1.9976 6 7 2.8001 3.4054 -0.6523 7 6 2.7032 3.4670 0.6479 8 17 3.1046 4.8357 1.6375 9 6 2.2132 2.2233 1.1088 10 6 1.9508 1.8513 2.5106 11 8 0.8552 2.0528 2.9983 12 7 2.9251 1.2877 3.2519 13 6 4.2539 1.0385 2.6769 14 6 4.6136 -0.4358 2.8871 15 6 4.4980 -0.7778 4.3744 16 6 3.0559 -0.5614 4.8387 17 1 2.3857 -1.1869 4.2492 18 6 2.9342 -0.9349 6.3175 19 7 1.5322 -0.8383 6.7317 20 6 1.1782 -1.1283 8.0223 21 1 1.9322 -1.4286 8.7347 22 6 -0.1501 -1.0363 8.4149 23 7 -1.0691 -0.6697 7.5468 24 14 -0.6334 -1.4326 10.1753 25 1 -2.0991 -1.2583 10.3374 26 1 -0.2640 -2.8370 10.4857 27 1 0.0790 -0.5168 11.1022 28 6 2.6785 0.9109 4.6505 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 4.2384 1.2622 1.6102 35 1 4.9909 1.6707 3.1721 36 1 3.9290 -1.0624 2.3154 37 1 5.6353 -0.6125 2.5510 38 1 5.1647 -0.1339 4.9479 39 1 4.7772 -1.8199 4.5301 40 1 3.5376 -0.2521 6.9156 41 1 3.2870 -1.9556 6.4647 42 1 0.8549 -0.5689 6.0917 43 1 -0.8182 -0.4643 6.6326 44 1 1.6235 1.0505 4.8859 45 1 3.2854 1.5306 5.3105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266791032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:34 Heat of formation + Delta-G solvation = 7.679877 kcal Electronic energy + Delta-G solvation = -28275.830289 eV Core-core repulsion = 24354.536782 eV Total energy + Delta-G solvation = -3921.293507 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.84339 -40.95926 -38.81256 -38.03291 -36.84734 -35.24632 -34.61669 -33.08403 -32.61954 -31.37468 -30.55546 -27.11208 -26.69287 -25.08382 -24.95945 -23.31432 -22.98739 -22.70637 -21.19843 -19.93319 -19.33680 -18.90861 -17.89407 -17.11763 -16.75119 -16.50295 -16.30403 -16.18508 -15.88698 -15.69248 -15.37596 -15.25932 -15.03636 -14.59528 -14.24730 -14.14982 -14.03311 -13.84198 -13.73031 -13.20442 -13.06715 -12.98252 -12.67765 -12.52813 -12.45269 -12.29469 -12.11987 -11.91922 -11.90066 -11.85436 -11.72218 -11.51958 -11.19468 -11.07200 -10.92552 -10.64463 -9.93696 -9.71517 -9.10215 -8.38894 -5.32773 0.27784 0.35083 0.90400 1.39645 1.57718 1.68856 1.69900 1.85162 2.07498 2.72863 3.28337 3.41411 3.49549 3.62915 3.70624 3.82351 3.83919 3.95055 4.06475 4.09499 4.17103 4.24865 4.32775 4.38554 4.47721 4.55537 4.67515 4.71100 4.77116 4.84455 4.86762 4.89618 4.96303 4.98312 5.09487 5.18569 5.25474 5.28959 5.45151 5.48209 5.59142 5.88826 6.16718 6.32855 6.47966 7.06829 7.09753 8.00167 8.12319 9.12241 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013856 B = 0.003076 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.316471 B = 9101.064733 C = 9193.409630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.065 4.065 3 C 0.167 3.833 4 N -0.420 5.420 5 H 0.468 0.532 6 N -0.284 5.284 7 C 0.147 3.853 8 Cl 0.014 6.986 9 C -0.286 4.286 10 C 0.593 3.407 11 O -0.579 6.579 12 N -0.594 5.594 13 C 0.105 3.895 14 C -0.122 4.122 15 C -0.106 4.106 16 C -0.092 4.092 17 H 0.058 0.942 18 C 0.163 3.837 19 N -0.759 5.759 20 C -0.336 4.336 21 H 0.070 0.930 22 C -0.107 4.107 23 N -0.974 5.974 24 Si 1.130 2.870 25 H -0.294 1.294 26 H -0.274 1.274 27 H -0.277 1.277 28 C 0.128 3.872 29 H 0.084 0.916 30 H 0.028 0.972 31 H 0.071 0.929 32 H 0.133 0.867 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.023 0.977 41 H 0.027 0.973 42 H 0.358 0.642 43 H 0.240 0.760 44 H 0.051 0.949 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.953 1.611 -22.992 28.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.104 4.104 3 C 0.033 3.967 4 N -0.132 5.132 5 H 0.319 0.681 6 N -0.110 5.110 7 C -0.045 4.045 8 Cl 0.042 6.958 9 C -0.302 4.302 10 C 0.380 3.620 11 O -0.458 6.458 12 N -0.325 5.325 13 C -0.017 4.017 14 C -0.160 4.160 15 C -0.144 4.144 16 C -0.111 4.111 17 H 0.077 0.923 18 C 0.037 3.963 19 N -0.404 5.404 20 C -0.467 4.467 21 H 0.088 0.912 22 C -0.298 4.298 23 N -0.623 5.623 24 Si 0.954 3.046 25 H -0.221 1.221 26 H -0.200 1.200 27 H -0.203 1.203 28 C 0.005 3.995 29 H 0.103 0.897 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.151 0.849 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.128 0.872 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.040 0.960 41 H 0.045 0.955 42 H 0.190 0.810 43 H 0.051 0.949 44 H 0.069 0.931 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.714 2.342 -22.477 26.967 hybrid contribution 0.358 0.261 -0.512 0.677 sum 15.073 2.603 -22.989 27.612 Atomic orbital electron populations 1.21763 0.93646 1.03598 1.01898 1.20552 0.96681 0.86493 1.06654 1.21654 0.94089 0.95740 0.85242 1.45815 1.49686 1.07986 1.09686 0.68122 1.77108 1.23572 1.00385 1.09893 1.22576 1.00862 0.90048 0.90982 1.98421 1.92000 1.40091 1.65295 1.19589 1.20992 0.95599 0.93976 1.17597 0.83163 0.76355 0.84852 1.90828 1.25659 1.55626 1.73691 1.48118 1.13058 1.59499 1.11807 1.21988 0.82056 0.97929 0.99695 1.21899 1.03854 0.94471 0.95798 1.21507 0.93142 1.02989 0.96733 1.21531 0.99414 0.94656 0.95519 0.92307 1.20778 0.84776 0.97771 0.92998 1.42681 1.04686 1.83455 1.09554 1.20418 0.95347 1.41874 0.89091 0.91248 1.27303 0.92095 1.00715 1.09678 1.70992 1.35263 1.51415 1.04584 0.82623 0.75293 0.76824 0.69871 1.22061 1.19961 1.20334 1.21403 1.01083 0.95691 0.81300 0.89702 0.95316 0.90954 0.84880 0.89292 0.88983 0.90106 0.91293 0.87181 0.90694 0.90210 0.95955 0.95460 0.81026 0.94941 0.93085 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.89 71.98 0.71 -1.81 16 2 C -0.07 -0.82 6.27 29.85 0.19 -0.64 16 3 C 0.17 2.89 6.42 42.15 0.27 3.16 16 4 N -0.42 -5.68 7.28 -46.80 -0.34 -6.02 16 5 H 0.47 2.15 8.96 -213.42 -1.91 0.24 16 6 N -0.28 -5.98 12.64 -48.95 -0.62 -6.59 16 7 C 0.15 3.67 7.89 85.66 0.68 4.34 16 8 Cl 0.01 0.36 29.19 -2.72 -0.08 0.28 16 9 C -0.29 -7.29 3.87 -20.13 -0.08 -7.37 16 10 C 0.59 19.57 7.14 86.65 0.62 20.19 16 11 O -0.58 -25.69 16.52 -4.05 -0.07 -25.76 16 12 N -0.59 -16.91 2.97 -822.92 -2.45 -19.35 16 13 C 0.10 1.95 6.34 86.37 0.55 2.50 16 14 C -0.12 -1.84 6.08 30.68 0.19 -1.65 16 15 C -0.11 -2.19 5.17 30.62 0.16 -2.03 16 16 C -0.09 -2.88 2.37 -10.73 -0.03 -2.91 16 17 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 18 C 0.16 6.60 5.65 86.38 0.49 7.08 16 19 N -0.76 -40.39 5.37 -343.44 -1.85 -42.24 16 20 C -0.34 -19.72 9.99 84.03 0.84 -18.88 16 21 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 22 C -0.11 -6.50 5.50 84.86 0.47 -6.03 16 23 N -0.97 -64.62 13.70 21.65 0.30 -64.33 16 24 Si 1.13 53.82 29.92 68.60 2.05 55.87 16 25 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 27 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 28 C 0.13 4.45 5.51 86.35 0.48 4.93 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.03 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.13 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.09 1.36 8.08 -2.39 -0.02 1.34 16 34 H 0.09 1.50 6.24 -2.39 -0.01 1.49 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.36 20.36 5.72 -92.71 -0.53 19.82 16 43 H 0.24 16.22 6.77 -92.70 -0.63 15.59 16 44 H 0.05 2.30 6.20 -2.39 -0.01 2.29 16 45 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -84.47 382.68 1.20 -83.27 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: -1.28 Total: 23.99 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: 5.52 Total: 0.89 kcal Atomic # 7 Polarization: -133.58 SS G_CDS: -4.95 Total: -138.53 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.07 Total: -25.76 kcal Atomic # 14 Polarization: 53.82 SS G_CDS: 2.05 Total: 55.87 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -0.08 Total: 0.28 kcal Total: -84.47 1.20 -83.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266791032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.950 kcal (2) G-P(sol) polarization free energy of solvation -84.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds