Wall clock time and date at job start Sat Apr 11 2020 06:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35461 * 126.43364 * 2 1 4 4 Cl 1.73599 * 127.23694 * 359.97438 * 3 2 1 5 5 C 1.41546 * 105.52705 * 179.97438 * 3 2 1 6 6 C 1.47660 * 126.46777 * 179.97438 * 5 3 2 7 7 O 1.21582 * 119.99723 * 0.02562 * 6 5 3 8 8 N 1.34769 * 120.00610 * 179.97438 * 6 5 3 9 9 C 1.47430 * 125.64372 * 4.67918 * 8 6 5 10 10 C 1.54911 * 104.82834 * 204.14442 * 9 8 6 11 11 C 1.55154 * 101.58461 * 322.99126 * 10 9 8 12 12 C 1.47023 * 125.65301 * 184.70005 * 8 6 5 13 13 H 1.08997 * 110.00964 * 59.43330 * 12 8 6 14 14 C 1.52997 * 109.87957 * 298.34135 * 12 8 6 15 15 N 1.46508 * 109.47078 * 175.47605 * 14 12 8 16 16 C 1.46495 * 119.99969 * 267.35341 * 15 14 12 17 17 C 1.36938 * 119.99683 * 87.34793 * 15 14 12 18 18 H 1.08003 * 120.00325 * 3.56942 * 17 15 14 19 19 C 1.38812 * 119.99764 * 183.57003 * 17 15 14 20 20 N 1.31618 * 120.00020 * 352.49966 * 19 17 15 21 21 Si 1.86799 * 120.00109 * 172.77585 * 19 17 15 22 22 H 1.48496 * 109.47080 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47163 * 120.00135 * 21 19 17 24 24 H 1.48494 * 109.47182 * 239.99882 * 21 19 17 25 25 N 1.31829 * 107.07301 * 0.23586 * 5 3 2 26 26 N 1.28476 * 110.13700 * 359.59297 * 25 5 3 27 27 C 1.46500 * 124.93525 * 180.14260 * 26 25 5 28 28 H 1.09000 * 109.47337 * 90.03376 * 1 2 3 29 29 H 1.09006 * 109.47182 * 210.03106 * 1 2 3 30 30 H 1.09002 * 109.47218 * 330.03046 * 1 2 3 31 31 H 1.08999 * 110.36553 * 85.30865 * 9 8 6 32 32 H 1.09001 * 110.36695 * 322.98480 * 9 8 6 33 33 H 1.09000 * 111.00375 * 204.91263 * 10 9 8 34 34 H 1.08997 * 111.00134 * 81.07083 * 10 9 8 35 35 H 1.08995 * 110.72126 * 277.13584 * 11 10 9 36 36 H 1.09005 * 110.71726 * 153.86188 * 11 10 9 37 37 H 1.08994 * 109.47676 * 55.47984 * 14 12 8 38 38 H 1.09007 * 109.47240 * 295.47185 * 14 12 8 39 39 H 1.08994 * 109.46875 * 242.10806 * 16 15 14 40 40 H 1.09005 * 109.47184 * 2.10863 * 16 15 14 41 41 H 1.09007 * 109.47182 * 122.10472 * 16 15 14 42 42 H 0.96998 * 120.00189 * 179.97438 * 20 19 17 43 43 H 1.08995 * 109.47001 * 270.31869 * 27 26 25 44 44 H 1.09000 * 109.46693 * 30.31691 * 27 26 25 45 45 H 1.08998 * 109.47001 * 150.31760 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0898 0.0000 4 17 1.8234 2.7558 -0.0006 5 6 3.6337 0.5847 0.0006 6 6 4.8774 1.3809 0.0003 7 8 4.8216 2.5954 -0.0001 8 7 6.0742 0.7613 0.0015 9 6 6.2883 -0.6942 -0.0946 10 6 7.6736 -0.9349 0.5554 11 6 8.4590 0.3191 0.0886 12 6 7.3825 1.4248 0.0993 13 1 7.4441 1.9932 1.0273 14 6 7.5833 2.3580 -1.0965 15 7 8.8395 3.0946 -0.9356 16 6 8.8397 4.4104 -0.2917 17 6 10.0134 2.5529 -1.3871 18 1 10.0059 1.6095 -1.9129 19 6 11.2130 3.2163 -1.1688 20 7 11.2106 4.4309 -0.6617 21 14 12.8305 2.3883 -1.6020 22 1 12.5618 1.0382 -2.1590 23 1 13.5501 3.2056 -2.6117 24 1 13.6653 2.2632 -0.3804 25 7 3.5456 -0.7306 -0.0043 26 7 2.3125 -1.0913 0.0008 27 6 1.8445 -2.4795 0.0006 28 1 -0.3634 -0.0006 -1.0276 29 1 -0.3634 -0.8897 0.5143 30 1 -0.3634 0.8903 0.5134 31 1 6.2994 -1.0079 -1.1384 32 1 5.5133 -1.2287 0.4548 33 1 8.1313 -1.8473 0.1732 34 1 7.5953 -0.9648 1.6422 35 1 8.8537 0.1747 -0.9170 36 1 9.2607 0.5547 0.7886 37 1 6.7535 3.0626 -1.1509 38 1 7.6217 1.7702 -2.0137 39 1 9.1874 5.1617 -1.0007 40 1 7.8284 4.6567 0.0320 41 1 9.5035 4.3918 0.5727 42 1 12.0488 4.8943 -0.5089 43 1 1.7292 -2.8239 -1.0271 44 1 2.5715 -3.1080 0.5150 45 1 0.8848 -2.5394 0.5138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275142395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:27 Heat of formation + Delta-G solvation = 83.993088 kcal Electronic energy + Delta-G solvation = -28161.390206 eV Core-core repulsion = 24243.405887 eV Total energy + Delta-G solvation = -3917.984318 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.94217 -39.60037 -37.13482 -36.49007 -35.20528 -33.88031 -32.79957 -31.46007 -31.11812 -28.95656 -27.79488 -27.17428 -25.78216 -25.08656 -23.80135 -21.94374 -21.08413 -20.98136 -20.04282 -18.50952 -17.22872 -16.86144 -16.73054 -16.46353 -15.80479 -15.06339 -14.82092 -14.54476 -14.13600 -13.92750 -13.71942 -13.52425 -13.31241 -13.14503 -13.07130 -12.83919 -12.69567 -12.62547 -12.42304 -11.94570 -11.89074 -11.67865 -11.54739 -11.05590 -10.85069 -10.76793 -10.68685 -10.45700 -10.35139 -10.18160 -10.00319 -9.77499 -9.59825 -9.42067 -9.34308 -8.86014 -8.47070 -8.19247 -6.75296 -5.52292 -2.93517 1.38727 1.70813 1.75370 2.51938 3.26388 3.44340 3.49923 3.52427 3.55357 4.07290 4.19499 4.49376 4.56456 4.59877 4.64177 4.87589 4.97698 5.02626 5.06711 5.30782 5.33285 5.37423 5.41610 5.53758 5.68957 5.80641 5.82592 5.94765 6.02942 6.10937 6.23754 6.36360 6.47056 6.56620 6.71588 6.79191 6.95238 7.03925 7.14265 7.55100 7.80735 7.85217 7.91276 8.08818 8.48238 8.52835 9.39308 10.03545 10.48449 11.47080 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019565 B = 0.003046 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.755747 B = 9189.423318 C =10383.489892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.022 3.978 3 C -0.104 4.104 4 Cl -0.008 7.008 5 C 0.015 3.985 6 C 0.605 3.395 7 O -0.512 6.512 8 N -0.598 5.598 9 C 0.101 3.899 10 C -0.140 4.140 11 C -0.107 4.107 12 C 0.118 3.882 13 H 0.070 0.930 14 C 0.148 3.852 15 N -0.606 5.606 16 C 0.170 3.830 17 C -0.237 4.237 18 H 0.074 0.926 19 C -0.008 4.008 20 N -0.916 5.916 21 Si 0.903 3.097 22 H -0.280 1.280 23 H -0.293 1.293 24 H -0.291 1.291 25 N -0.247 5.247 26 N -0.284 5.284 27 C 0.088 3.912 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.039 0.961 39 H 0.037 0.963 40 H -0.005 1.005 41 H 0.044 0.956 42 H 0.247 0.753 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.331 -16.550 3.120 28.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 C -0.141 4.141 4 Cl 0.021 6.979 5 C -0.146 4.146 6 C 0.390 3.610 7 O -0.386 6.386 8 N -0.332 5.332 9 C -0.022 4.022 10 C -0.178 4.178 11 C -0.145 4.145 12 C 0.013 3.987 13 H 0.088 0.912 14 C 0.019 3.981 15 N -0.330 5.330 16 C 0.026 3.974 17 C -0.366 4.366 18 H 0.092 0.908 19 C -0.204 4.204 20 N -0.565 5.565 21 Si 0.734 3.266 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.218 1.218 25 N -0.082 5.082 26 N -0.072 5.072 27 C -0.052 4.052 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.013 0.987 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.106 0.894 44 H 0.118 0.882 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -22.698 -16.665 3.133 28.332 hybrid contribution 0.492 0.193 -0.184 0.560 sum -22.206 -16.471 2.949 27.805 Atomic orbital electron populations 1.20391 0.85935 1.04182 1.03706 1.21073 0.95330 0.85842 1.08088 1.20521 0.92060 0.87810 1.13758 1.98361 1.90761 1.11689 1.97084 1.21974 0.94345 0.89296 1.09004 1.16368 0.80449 0.86108 0.78059 1.90858 1.85713 1.12094 1.49915 1.48502 1.05528 1.08137 1.71003 1.22459 0.97827 0.81241 1.00705 1.22865 0.95196 0.99272 1.00439 1.22569 0.96796 0.92023 1.03099 1.22724 0.79242 0.94687 1.02066 0.91198 1.21065 0.89414 0.93864 0.93788 1.44018 1.02419 1.17502 1.69043 1.21044 0.93567 0.85468 0.97370 1.19347 0.84219 1.03541 1.29521 0.90781 1.24851 0.97696 0.96580 1.01235 1.70266 1.24320 1.11343 1.50546 0.86182 0.84461 0.78582 0.77404 1.20558 1.22000 1.21829 1.73760 1.01143 1.13875 1.19432 1.45357 1.02857 1.07266 1.51767 1.22196 1.01731 0.76573 1.04697 0.89859 0.90762 0.89275 0.91911 0.89431 0.90483 0.91345 0.90185 0.89993 0.92479 0.94247 0.94419 0.98681 0.93760 0.94161 0.89429 0.88182 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 9.99 36.00 0.36 -0.10 16 2 C 0.02 0.22 6.94 -81.90 -0.57 -0.35 16 3 C -0.10 -1.43 6.79 -39.31 -0.27 -1.70 16 4 Cl -0.01 -0.11 27.92 -51.86 -1.45 -1.55 16 5 C 0.02 0.24 6.97 -82.76 -0.58 -0.34 16 6 C 0.61 11.26 7.67 -12.42 -0.10 11.16 16 7 O -0.51 -11.05 14.68 5.29 0.08 -10.98 16 8 N -0.60 -10.53 3.06 -164.19 -0.50 -11.04 16 9 C 0.10 1.42 6.31 -2.53 -0.02 1.41 16 10 C -0.14 -1.89 7.08 -24.58 -0.17 -2.07 16 11 C -0.11 -1.90 5.46 -24.90 -0.14 -2.03 16 12 C 0.12 2.34 3.15 -66.96 -0.21 2.13 16 13 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 14 C 0.15 3.38 5.16 -4.04 -0.02 3.36 16 15 N -0.61 -16.05 2.90 -181.11 -0.52 -16.57 16 16 C 0.17 4.60 8.99 59.84 0.54 5.14 16 17 C -0.24 -6.53 8.63 -15.06 -0.13 -6.66 16 18 H 0.07 1.96 6.90 -52.48 -0.36 1.60 16 19 C -0.01 -0.22 5.44 -17.43 -0.09 -0.32 16 20 N -0.92 -27.36 9.46 55.49 0.53 -26.84 16 21 Si 0.90 22.18 29.56 -169.99 -5.02 17.16 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 N -0.25 -3.16 9.00 33.42 0.30 -2.86 16 26 N -0.28 -2.68 3.72 -63.68 -0.24 -2.92 16 27 C 0.09 0.34 11.12 59.85 0.67 1.01 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.22 7.03 -51.93 -0.36 -0.15 16 30 H 0.09 0.50 8.03 -51.93 -0.42 0.08 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.14 5.93 -51.93 -0.31 0.83 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.51 6.57 -51.93 -0.34 1.16 16 36 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.06 1.38 6.32 -51.93 -0.33 1.05 16 38 H 0.04 0.90 7.95 -51.93 -0.41 0.48 16 39 H 0.04 1.09 7.18 -51.93 -0.37 0.72 16 40 H -0.01 -0.14 7.78 -51.93 -0.40 -0.54 16 41 H 0.04 1.27 6.90 -51.93 -0.36 0.91 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 44 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.10 0.12 6.98 -51.93 -0.36 -0.24 16 LS Contribution 372.34 15.07 5.61 5.61 Total: -1.00 -34.78 372.34 -8.50 -43.27 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -6.55 Total: -3.92 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: -0.73 Total: 10.63 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.44 Total: -60.23 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.45 Total: -1.55 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.78 -8.50 -43.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275142395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.267 kcal (2) G-P(sol) polarization free energy of solvation -34.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds