Wall clock time and date at job start Sat Apr 11 2020 06:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30856 * 125.89151 * 2 1 4 4 N 1.40087 * 108.22379 * 180.13453 * 3 2 1 5 5 C 1.46499 * 126.03755 * 179.87705 * 4 3 2 6 6 C 1.50700 * 109.47257 * 269.69352 * 5 4 3 7 7 O 1.21283 * 119.99803 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99675 * 180.27849 * 6 5 4 9 9 C 1.46497 * 119.99525 * 179.72583 * 8 6 5 10 10 C 1.53782 * 113.61561 * 254.13328 * 9 8 6 11 11 C 1.54057 * 86.98454 * 270.84202 * 10 9 8 12 12 C 1.52997 * 113.61582 * 220.02214 * 11 10 9 13 13 N 1.46503 * 109.47120 * 272.48963 * 12 11 10 14 14 C 1.36934 * 120.00543 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99788 * 0.02562 * 14 13 12 16 16 C 1.38805 * 120.00433 * 180.02562 * 14 13 12 17 17 N 1.31622 * 119.99940 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00218 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46912 * 60.00533 * 18 16 14 20 20 H 1.48500 * 109.47211 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47327 * 300.00566 * 18 16 14 22 22 C 1.53785 * 87.07625 * 334.56474 * 11 10 9 23 23 C 1.35048 * 107.92138 * 359.61967 * 4 3 2 24 24 C 1.50703 * 126.13198 * 180.24730 * 23 4 3 25 25 C 1.35366 * 107.73396 * 0.22360 * 23 4 3 26 26 Cl 1.73600 * 126.04950 * 179.97438 * 25 23 4 27 27 H 1.08995 * 109.47126 * 270.28441 * 1 2 3 28 28 H 1.09004 * 109.47014 * 30.28011 * 1 2 3 29 29 H 1.08993 * 109.47122 * 150.28237 * 1 2 3 30 30 H 1.09009 * 109.46700 * 149.69246 * 5 4 3 31 31 H 1.08998 * 109.46827 * 29.69820 * 5 4 3 32 32 H 0.97000 * 119.99894 * 359.71837 * 8 6 5 33 33 H 1.08999 * 112.85394 * 25.33225 * 9 8 6 34 34 H 1.09000 * 113.61457 * 25.43148 * 10 9 8 35 35 H 1.08997 * 113.61654 * 156.33620 * 10 9 8 36 36 H 1.08998 * 113.69033 * 89.12549 * 11 10 9 37 37 H 1.08999 * 109.47812 * 32.49249 * 12 11 10 38 38 H 1.09004 * 109.47304 * 152.49425 * 12 11 10 39 39 H 0.97001 * 120.00085 * 0.02562 * 13 12 11 40 40 H 0.97003 * 119.99943 * 179.97438 * 17 16 14 41 41 H 1.08995 * 113.61808 * 270.88153 * 22 11 10 42 42 H 1.09002 * 113.60904 * 139.97880 * 22 11 10 43 43 H 1.08999 * 109.47616 * 89.99487 * 24 23 4 44 44 H 1.09005 * 109.47132 * 209.99817 * 24 23 4 45 45 H 1.09000 * 109.47110 * 329.99369 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0601 0.0000 4 7 3.6089 0.6349 -0.0031 5 6 4.7897 1.5021 -0.0067 6 6 5.1954 1.7924 -1.4287 7 8 4.5611 1.3209 -2.3486 8 7 6.2669 2.5710 -1.6781 9 6 6.6649 2.8483 -3.0605 10 6 7.9237 2.0844 -3.5041 11 6 8.7373 3.2803 -2.9737 12 6 9.9231 3.6580 -3.8637 13 7 11.0954 2.8695 -3.4759 14 6 12.2825 3.0367 -4.1376 15 1 12.3547 3.7502 -4.9453 16 6 13.3931 2.2894 -3.7705 17 7 13.3050 1.4195 -2.7866 18 14 15.0123 2.5170 -4.6737 19 1 15.4644 3.9244 -4.5322 20 1 16.0340 1.6079 -4.0951 21 1 14.8256 2.1994 -6.1123 22 6 7.4855 4.1394 -3.2181 23 6 3.6149 -0.7155 0.0035 24 6 4.8360 -1.5987 0.0084 25 6 2.3274 -1.1335 0.0056 26 17 1.7892 -2.7840 0.0131 27 1 -0.3633 0.0051 1.0276 28 1 -0.3633 0.8875 -0.5182 29 1 -0.3633 -0.8924 -0.5094 30 1 5.6090 1.0024 0.5102 31 1 4.5554 2.4370 0.5024 32 1 6.7745 2.9478 -0.9424 33 1 5.8358 2.7693 -3.7637 34 1 8.0916 1.1605 -2.9507 35 1 7.9961 1.9515 -4.5835 36 1 9.0086 3.1932 -1.9216 37 1 9.6756 3.4528 -4.9052 38 1 10.1433 4.7189 -3.7448 39 1 11.0305 2.2285 -2.7508 40 1 14.0810 0.8969 -2.5303 41 1 7.4382 4.5672 -4.2195 42 1 7.2997 4.8733 -2.4339 43 1 5.1301 -1.8065 1.0372 44 1 4.6090 -2.5353 -0.5009 45 1 5.6522 -1.0931 -0.5077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275323881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:31 Heat of formation + Delta-G solvation = 62.174203 kcal Electronic energy + Delta-G solvation = -26413.209110 eV Core-core repulsion = 22494.278654 eV Total energy + Delta-G solvation = -3918.930456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.79353 -40.27654 -38.44710 -36.63822 -34.63760 -34.46954 -33.33283 -32.24689 -30.95215 -30.09967 -27.35957 -27.16487 -26.10284 -25.59414 -23.44544 -21.73520 -21.37217 -20.80993 -19.87072 -19.19361 -17.82817 -17.27456 -17.05400 -15.96036 -15.83929 -15.54113 -14.93315 -14.69508 -14.45911 -14.35170 -14.09125 -13.84730 -13.61108 -13.55387 -13.41781 -12.99112 -12.80276 -12.62824 -12.61897 -12.42848 -12.29478 -12.21163 -12.03571 -11.71466 -11.49648 -11.07883 -10.84355 -10.70040 -10.59047 -10.42949 -10.31147 -10.16412 -9.90249 -9.66377 -9.41561 -9.18162 -8.87733 -8.59371 -6.93808 -5.79125 -3.07343 1.30410 1.62026 2.22220 2.26360 2.42584 2.91258 3.42120 3.46517 3.47461 4.06208 4.15957 4.28635 4.47802 4.54540 4.55006 4.59054 4.71864 4.76022 4.95479 5.02533 5.05154 5.12921 5.30261 5.33891 5.48958 5.54921 5.55308 5.61677 5.68114 5.77349 5.86043 5.91202 6.03213 6.13462 6.13705 6.20743 6.34499 6.43468 6.54136 6.73260 6.87492 7.19004 7.28381 7.67078 7.87906 8.40243 9.51215 10.09766 10.44163 11.43777 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019880 B = 0.001909 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.125949 B =14660.363071 C =15630.877175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.095 3.905 3 N -0.275 5.275 4 N -0.349 5.349 5 C 0.115 3.885 6 C 0.497 3.503 7 O -0.519 6.519 8 N -0.704 5.704 9 C 0.116 3.884 10 C -0.137 4.137 11 C -0.112 4.112 12 C 0.162 3.838 13 N -0.732 5.732 14 C -0.240 4.240 15 H 0.069 0.931 16 C -0.015 4.015 17 N -0.935 5.935 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.137 4.137 23 C 0.119 3.881 24 C -0.099 4.099 25 C -0.188 4.188 26 Cl -0.043 7.043 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.403 0.597 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.020 0.980 38 H 0.019 0.981 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.457 -2.474 9.981 26.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 N -0.097 5.097 4 N -0.131 5.131 5 C -0.011 4.011 6 C 0.280 3.720 7 O -0.393 6.393 8 N -0.356 5.356 9 C 0.011 3.989 10 C -0.176 4.176 11 C -0.131 4.131 12 C 0.034 3.966 13 N -0.376 5.376 14 C -0.371 4.371 15 H 0.087 0.913 16 C -0.211 4.211 17 N -0.583 5.583 18 Si 0.739 3.261 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.175 4.175 23 C -0.009 4.009 24 C -0.158 4.158 25 C -0.226 4.226 26 Cl -0.015 7.015 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.238 0.762 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.216 0.784 40 H 0.065 0.935 41 H 0.114 0.886 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.111 0.889 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.679 -1.534 9.187 26.378 hybrid contribution 1.352 -0.870 0.063 1.609 sum -23.327 -2.404 9.250 25.209 Atomic orbital electron populations 1.20230 0.85918 1.03827 1.03312 1.22248 0.97317 0.88879 0.98855 1.77444 0.85645 1.21566 1.25008 1.47538 1.04926 1.03303 1.57310 1.21533 0.85953 0.97353 0.96214 1.20699 0.80775 0.79338 0.91144 1.90792 1.52859 1.49998 1.45688 1.45597 1.29786 1.51171 1.09017 1.21982 0.97198 0.97189 0.82537 1.23456 0.94143 0.98044 1.01955 1.22813 0.94283 0.95443 1.00581 1.20640 0.86288 0.94568 0.95094 1.42329 1.06426 1.47090 1.41709 1.19198 0.87836 1.17875 1.12183 0.91287 1.24740 0.98199 0.99184 0.98965 1.69647 1.29910 1.27914 1.30877 0.86259 0.83570 0.77239 0.79065 1.21282 1.21687 1.21277 1.23309 0.95611 0.95614 1.03010 1.20703 0.96357 0.84656 0.99166 1.20577 0.92679 0.98656 1.03846 1.20250 0.92029 0.86972 1.23383 1.98306 1.89748 1.15597 1.97823 0.90115 0.90424 0.90043 0.85477 0.85244 0.76173 0.88363 0.91316 0.89034 0.89372 0.96207 0.96370 0.78371 0.93501 0.88596 0.91148 0.89372 0.88915 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.31 36.01 0.37 -0.22 16 2 C 0.09 1.08 7.22 -82.37 -0.59 0.49 16 3 N -0.28 -3.51 12.58 33.69 0.42 -3.09 16 4 N -0.35 -3.91 3.10 -58.27 -0.18 -4.09 16 5 C 0.12 0.91 6.55 -5.19 -0.03 0.88 16 6 C 0.50 5.52 7.90 -10.98 -0.09 5.43 16 7 O -0.52 -8.28 16.05 5.55 0.09 -8.19 16 8 N -0.70 -6.74 5.26 -53.02 -0.28 -7.02 16 9 C 0.12 1.35 4.29 -67.12 -0.29 1.06 16 10 C -0.14 -1.91 7.45 -25.77 -0.19 -2.10 16 11 C -0.11 -1.61 3.65 -89.66 -0.33 -1.94 16 12 C 0.16 3.10 6.10 -4.04 -0.02 3.07 16 13 N -0.73 -18.12 5.60 -59.91 -0.34 -18.45 16 14 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 15 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 16 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 17 N -0.93 -27.95 13.06 55.49 0.72 -27.22 16 18 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 C -0.14 -1.52 7.38 -25.91 -0.19 -1.71 16 23 C 0.12 1.29 6.94 -82.20 -0.57 0.72 16 24 C -0.10 -0.80 9.73 36.01 0.35 -0.45 16 25 C -0.19 -2.12 6.63 -39.97 -0.27 -2.38 16 26 Cl -0.04 -0.41 28.58 -51.86 -1.48 -1.90 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.57 8.00 -51.93 -0.42 0.15 16 30 H 0.13 0.60 7.66 -51.92 -0.40 0.20 16 31 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.40 2.75 8.70 -40.82 -0.36 2.40 16 33 H 0.10 1.28 7.50 -51.93 -0.39 0.89 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.33 7.90 -51.93 -0.41 0.92 16 36 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.02 0.39 7.85 -51.93 -0.41 -0.02 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.38 9.92 7.67 -40.82 -0.31 9.61 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.73 7.91 -51.93 -0.41 0.32 16 45 H 0.08 0.61 7.73 -51.93 -0.40 0.21 16 LS Contribution 395.04 15.07 5.95 5.95 Total: -1.00 -35.89 395.04 -9.06 -44.95 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.85 Total: 6.28 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -2.10 Total: -4.47 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: 0.35 Total: -59.87 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.09 Total: -8.19 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.48 Total: -1.90 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.89 -9.06 -44.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275323881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.122 kcal (2) G-P(sol) polarization free energy of solvation -35.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds