Wall clock time and date at job start Sat Apr 11 2020 06:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30856 * 125.89151 * 2 1 4 4 N 1.40087 * 108.22379 * 180.13453 * 3 2 1 5 5 C 1.46499 * 126.03755 * 179.87705 * 4 3 2 6 6 C 1.50700 * 109.47257 * 269.69352 * 5 4 3 7 7 O 1.21283 * 119.99803 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99675 * 180.27849 * 6 5 4 9 9 C 1.46497 * 119.99525 * 179.72583 * 8 6 5 10 10 C 1.53782 * 113.61561 * 254.13328 * 9 8 6 11 11 C 1.54057 * 86.98454 * 270.84202 * 10 9 8 12 12 C 1.52997 * 113.61582 * 220.02214 * 11 10 9 13 13 N 1.46503 * 109.47120 * 272.48963 * 12 11 10 14 14 C 1.36934 * 120.00543 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99788 * 0.02562 * 14 13 12 16 16 C 1.38805 * 120.00433 * 180.02562 * 14 13 12 17 17 N 1.31622 * 119.99940 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00218 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46912 * 60.00533 * 18 16 14 20 20 H 1.48500 * 109.47211 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47327 * 300.00566 * 18 16 14 22 22 C 1.53785 * 87.07625 * 334.56474 * 11 10 9 23 23 C 1.35048 * 107.92138 * 359.61967 * 4 3 2 24 24 C 1.50703 * 126.13198 * 180.24730 * 23 4 3 25 25 C 1.35366 * 107.73396 * 0.22360 * 23 4 3 26 26 Cl 1.73600 * 126.04950 * 179.97438 * 25 23 4 27 27 H 1.08995 * 109.47126 * 270.28441 * 1 2 3 28 28 H 1.09004 * 109.47014 * 30.28011 * 1 2 3 29 29 H 1.08993 * 109.47122 * 150.28237 * 1 2 3 30 30 H 1.09009 * 109.46700 * 149.69246 * 5 4 3 31 31 H 1.08998 * 109.46827 * 29.69820 * 5 4 3 32 32 H 0.97000 * 119.99894 * 359.71837 * 8 6 5 33 33 H 1.08999 * 112.85394 * 25.33225 * 9 8 6 34 34 H 1.09000 * 113.61457 * 25.43148 * 10 9 8 35 35 H 1.08997 * 113.61654 * 156.33620 * 10 9 8 36 36 H 1.08998 * 113.69033 * 89.12549 * 11 10 9 37 37 H 1.08999 * 109.47812 * 32.49249 * 12 11 10 38 38 H 1.09004 * 109.47304 * 152.49425 * 12 11 10 39 39 H 0.97001 * 120.00085 * 0.02562 * 13 12 11 40 40 H 0.97003 * 119.99943 * 179.97438 * 17 16 14 41 41 H 1.08995 * 113.61808 * 270.88153 * 22 11 10 42 42 H 1.09002 * 113.60904 * 139.97880 * 22 11 10 43 43 H 1.08999 * 109.47616 * 89.99487 * 24 23 4 44 44 H 1.09005 * 109.47132 * 209.99817 * 24 23 4 45 45 H 1.09000 * 109.47110 * 329.99369 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0601 0.0000 4 7 3.6089 0.6349 -0.0031 5 6 4.7897 1.5021 -0.0067 6 6 5.1954 1.7924 -1.4287 7 8 4.5611 1.3209 -2.3486 8 7 6.2669 2.5710 -1.6781 9 6 6.6649 2.8483 -3.0605 10 6 7.9237 2.0844 -3.5041 11 6 8.7373 3.2803 -2.9737 12 6 9.9231 3.6580 -3.8637 13 7 11.0954 2.8695 -3.4759 14 6 12.2825 3.0367 -4.1376 15 1 12.3547 3.7502 -4.9453 16 6 13.3931 2.2894 -3.7705 17 7 13.3050 1.4195 -2.7866 18 14 15.0123 2.5170 -4.6737 19 1 15.4644 3.9244 -4.5322 20 1 16.0340 1.6079 -4.0951 21 1 14.8256 2.1994 -6.1123 22 6 7.4855 4.1394 -3.2181 23 6 3.6149 -0.7155 0.0035 24 6 4.8360 -1.5987 0.0084 25 6 2.3274 -1.1335 0.0056 26 17 1.7892 -2.7840 0.0131 27 1 -0.3633 0.0051 1.0276 28 1 -0.3633 0.8875 -0.5182 29 1 -0.3633 -0.8924 -0.5094 30 1 5.6090 1.0024 0.5102 31 1 4.5554 2.4370 0.5024 32 1 6.7745 2.9478 -0.9424 33 1 5.8358 2.7693 -3.7637 34 1 8.0916 1.1605 -2.9507 35 1 7.9961 1.9515 -4.5835 36 1 9.0086 3.1932 -1.9216 37 1 9.6756 3.4528 -4.9052 38 1 10.1433 4.7189 -3.7448 39 1 11.0305 2.2285 -2.7508 40 1 14.0810 0.8969 -2.5303 41 1 7.4382 4.5672 -4.2195 42 1 7.2997 4.8733 -2.4339 43 1 5.1301 -1.8065 1.0372 44 1 4.6090 -2.5353 -0.5009 45 1 5.6522 -1.0931 -0.5077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275323881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:30 Heat of formation + Delta-G solvation = 37.812753 kcal Electronic energy + Delta-G solvation = -26414.265502 eV Core-core repulsion = 22494.278654 eV Total energy + Delta-G solvation = -3919.986848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.56333 -41.24301 -39.50776 -37.40090 -36.35640 -35.22736 -34.52823 -33.06804 -32.70923 -30.83290 -28.62504 -28.03465 -27.07493 -26.64658 -25.16271 -23.08100 -22.35892 -21.58002 -20.65067 -20.31418 -19.07798 -18.63302 -18.03260 -16.97114 -16.64535 -16.63369 -16.37740 -15.77025 -15.67558 -15.42565 -15.13045 -15.01247 -14.82013 -14.52718 -14.24331 -14.20085 -13.73839 -13.53916 -13.40817 -13.29780 -13.24157 -13.11147 -12.96439 -12.87631 -12.80688 -12.67376 -12.25556 -12.23456 -11.93078 -11.76667 -11.47658 -11.37114 -11.26285 -11.16378 -10.85459 -10.20282 -10.13025 -9.37787 -8.97215 -7.95036 -5.22782 0.51989 0.90559 1.38539 1.46953 1.47186 1.49788 1.55875 1.66650 2.11429 2.56192 3.37662 3.39875 3.48754 3.54774 3.57566 3.59954 3.82480 3.92105 3.94374 4.04549 4.12980 4.26234 4.33762 4.55226 4.57901 4.65875 4.75004 4.75988 4.83681 4.86417 4.87459 4.91094 4.94340 4.98309 5.00372 5.13858 5.25555 5.33398 5.43312 5.48869 5.63688 5.74392 6.28075 6.41213 6.49337 7.08283 7.34316 8.12310 8.34821 9.28151 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019880 B = 0.001909 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.125949 B =14660.363071 C =15630.877175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.083 3.917 3 N -0.308 5.308 4 N -0.356 5.356 5 C 0.113 3.887 6 C 0.498 3.502 7 O -0.573 6.573 8 N -0.691 5.691 9 C 0.127 3.873 10 C -0.142 4.142 11 C -0.108 4.108 12 C 0.158 3.842 13 N -0.744 5.744 14 C -0.247 4.247 15 H 0.073 0.927 16 C -0.076 4.076 17 N -0.968 5.968 18 Si 0.972 3.028 19 H -0.277 1.277 20 H -0.295 1.295 21 H -0.280 1.280 22 C -0.116 4.116 23 C 0.113 3.887 24 C -0.098 4.098 25 C -0.209 4.209 26 Cl -0.035 7.035 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.164 0.836 31 H 0.156 0.844 32 H 0.420 0.580 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.017 0.983 38 H 0.022 0.978 39 H 0.374 0.626 40 H 0.251 0.749 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.112 0.888 44 H 0.090 0.910 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.654 -1.536 10.773 26.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.084 4.084 3 N -0.130 5.130 4 N -0.137 5.137 5 C -0.011 4.011 6 C 0.284 3.716 7 O -0.451 6.451 8 N -0.343 5.343 9 C 0.022 3.978 10 C -0.181 4.181 11 C -0.127 4.127 12 C 0.032 3.968 13 N -0.386 5.386 14 C -0.379 4.379 15 H 0.091 0.909 16 C -0.269 4.269 17 N -0.619 5.619 18 Si 0.801 3.199 19 H -0.203 1.203 20 H -0.221 1.221 21 H -0.206 1.206 22 C -0.155 4.155 23 C -0.016 4.016 24 C -0.156 4.156 25 C -0.247 4.247 26 Cl -0.007 7.007 27 H 0.115 0.885 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.181 0.819 31 H 0.174 0.826 32 H 0.258 0.742 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.035 0.965 38 H 0.039 0.961 39 H 0.206 0.794 40 H 0.060 0.940 41 H 0.120 0.880 42 H 0.114 0.886 43 H 0.130 0.870 44 H 0.109 0.891 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -24.884 -0.542 9.987 26.818 hybrid contribution 1.383 -1.160 -0.223 1.818 sum -23.501 -1.701 9.765 25.505 Atomic orbital electron populations 1.20337 0.84110 1.04229 1.04488 1.22775 0.98694 0.88773 0.98137 1.77363 0.86685 1.22548 1.26362 1.47787 1.05095 1.03747 1.57088 1.21873 0.86163 0.98825 0.94244 1.21259 0.80132 0.78267 0.91984 1.90775 1.54635 1.52125 1.47578 1.45478 1.29499 1.50606 1.08742 1.21730 0.95782 0.96870 0.83465 1.23446 0.95740 0.97662 1.01205 1.22735 0.93418 0.96786 0.99741 1.20835 0.86215 0.93876 0.95885 1.42547 1.07304 1.47517 1.41265 1.19608 0.89054 1.17248 1.11966 0.90895 1.25547 1.01590 0.99518 1.00202 1.69796 1.30482 1.29076 1.32529 0.85235 0.79442 0.77292 0.77936 1.20319 1.22106 1.20642 1.23219 0.92474 0.95449 1.04338 1.21178 0.97158 0.85023 0.98267 1.20668 0.91571 0.97986 1.05338 1.20486 0.92480 0.87488 1.24203 1.98298 1.89713 1.14881 1.97843 0.88477 0.90222 0.89372 0.81870 0.82625 0.74184 0.89558 0.92564 0.90170 0.88912 0.96550 0.96055 0.79416 0.94020 0.87968 0.88585 0.86989 0.89080 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.11 10.31 71.24 0.73 -0.38 16 2 C 0.08 1.88 7.22 43.11 0.31 2.19 16 3 N -0.31 -7.70 12.58 -47.34 -0.60 -8.29 16 4 N -0.36 -7.56 3.10 -338.28 -1.05 -8.61 16 5 C 0.11 1.55 6.55 85.63 0.56 2.11 16 6 C 0.50 10.38 7.90 87.66 0.69 11.08 16 7 O -0.57 -18.25 16.05 -3.04 -0.05 -18.30 16 8 N -0.69 -11.81 5.26 -440.03 -2.32 -14.12 16 9 C 0.13 2.78 4.29 45.52 0.20 2.98 16 10 C -0.14 -3.88 7.45 31.22 0.23 -3.64 16 11 C -0.11 -2.94 3.65 -10.17 -0.04 -2.98 16 12 C 0.16 5.93 6.10 86.38 0.53 6.46 16 13 N -0.74 -36.80 5.60 -343.45 -1.92 -38.73 16 14 C -0.25 -13.67 9.99 84.03 0.84 -12.83 16 15 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 16 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 17 N -0.97 -58.37 13.06 21.65 0.28 -58.08 16 18 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 C -0.12 -2.29 7.38 31.12 0.23 -2.06 16 23 C 0.11 2.34 6.94 41.40 0.29 2.62 16 24 C -0.10 -1.44 9.73 71.24 0.69 -0.74 16 25 C -0.21 -4.59 6.63 22.02 0.15 -4.44 16 26 Cl -0.04 -0.66 28.58 -2.72 -0.08 -0.74 16 27 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.09 1.18 8.00 -2.39 -0.02 1.16 16 30 H 0.16 1.00 7.66 -2.38 -0.02 0.98 16 31 H 0.16 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.42 4.44 8.70 -92.71 -0.81 3.63 16 33 H 0.09 2.18 7.50 -2.39 -0.02 2.17 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 2.36 7.90 -2.39 -0.02 2.34 16 36 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.02 0.64 7.85 -2.39 -0.02 0.62 16 38 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.37 19.54 7.67 -92.71 -0.71 18.83 16 40 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 41 H 0.10 1.94 8.10 -2.39 -0.02 1.92 16 42 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.09 1.37 7.91 -2.38 -0.02 1.35 16 45 H 0.08 1.13 7.73 -2.39 -0.02 1.11 16 Total: -1.00 -78.63 395.04 1.68 -76.95 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -0.50 Total: 25.71 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 5.88 Total: -3.52 kcal Atomic # 7 Polarization: -122.24 SS G_CDS: -5.60 Total: -127.84 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.05 Total: -18.30 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.74 kcal Total: -78.63 1.68 -76.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275323881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.762 kcal (2) G-P(sol) polarization free energy of solvation -78.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds