Wall clock time and date at job start Sat Apr 11 2020 06:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34238 * 126.27762 * 2 1 4 4 H 0.97004 * 125.73906 * 0.02562 * 3 2 1 5 5 N 1.39925 * 108.52555 * 179.84334 * 3 2 1 6 6 C 1.30534 * 108.89208 * 0.43418 * 5 3 2 7 7 Cl 1.73604 * 126.00498 * 179.72217 * 6 5 3 8 8 C 1.38064 * 126.28858 * 180.31353 * 2 1 3 9 9 C 1.47390 * 126.41893 * 0.02562 * 8 2 1 10 10 O 1.21606 * 120.00214 * 87.14314 * 9 8 2 11 11 N 1.34777 * 119.99699 * 267.14339 * 9 8 2 12 12 C 1.46501 * 120.00143 * 185.18967 * 11 9 8 13 13 H 1.09005 * 109.47006 * 4.25539 * 12 11 9 14 14 C 1.53000 * 109.47296 * 244.26227 * 12 11 9 15 15 N 1.46498 * 109.47072 * 54.99546 * 14 12 11 16 16 C 1.36944 * 120.00092 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99724 * 359.97438 * 16 15 14 18 18 C 1.38813 * 120.00246 * 180.02562 * 16 15 14 19 19 N 1.31617 * 119.99912 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00005 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46981 * 89.99891 * 20 18 16 22 22 H 1.48497 * 109.47007 * 210.00045 * 20 18 16 23 23 H 1.48501 * 109.46892 * 330.00387 * 20 18 16 24 24 C 1.52998 * 109.47189 * 124.25783 * 12 11 9 25 25 C 1.54260 * 110.03143 * 57.43569 * 24 12 11 26 26 C 1.54963 * 104.16119 * 217.13213 * 25 24 12 27 27 C 1.54895 * 102.77594 * 37.89033 * 26 25 24 28 28 C 1.53868 * 110.03452 * 300.21540 * 24 12 11 29 29 H 1.08998 * 109.47309 * 269.68437 * 1 2 3 30 30 H 1.09009 * 109.46323 * 149.68897 * 1 2 3 31 31 H 1.08995 * 109.47351 * 29.69308 * 1 2 3 32 32 H 0.97000 * 120.00303 * 5.18777 * 11 9 8 33 33 H 1.08998 * 109.47172 * 174.99437 * 14 12 11 34 34 H 1.09000 * 109.46986 * 294.99678 * 14 12 11 35 35 H 0.96999 * 120.00543 * 0.02562 * 15 14 12 36 36 H 0.97000 * 119.99885 * 179.97438 * 19 18 16 37 37 H 1.09007 * 110.01311 * 178.82500 * 24 12 11 38 38 H 1.08998 * 110.48551 * 335.78194 * 25 24 12 39 39 H 1.09003 * 110.48958 * 98.42428 * 25 24 12 40 40 H 1.09001 * 110.72209 * 279.57509 * 26 25 24 41 41 H 1.09005 * 110.76311 * 156.21767 * 26 25 24 42 42 H 1.08999 * 110.48830 * 203.40415 * 27 26 25 43 43 H 1.08994 * 110.59756 * 80.81267 * 27 26 25 44 44 H 1.08995 * 110.03460 * 238.57309 * 28 24 12 45 45 H 1.09004 * 110.03311 * 359.95497 * 28 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0822 0.0000 4 1 2.0018 2.0048 0.0004 5 7 3.6339 0.6555 0.0036 6 6 3.6599 -0.6495 -0.0036 7 17 5.0844 -1.6419 -0.0095 8 6 2.3242 -1.1128 -0.0061 9 6 1.8860 -2.5201 -0.0143 10 8 1.6556 -3.0790 -1.0694 11 7 1.7409 -3.1874 1.1476 12 6 1.4163 -4.6160 1.1363 13 1 1.4065 -4.9782 0.1082 14 6 0.0384 -4.8310 1.7657 15 7 -0.9501 -4.0018 1.0719 16 6 -2.2619 -4.0279 1.4640 17 1 -2.5678 -4.6601 2.2845 18 6 -3.1988 -3.2426 0.8063 19 7 -2.8261 -2.4725 -0.1939 20 14 -4.9883 -3.2788 1.3408 21 1 -5.2156 -2.2424 2.3798 22 1 -5.8601 -3.0058 0.1701 23 1 -5.3116 -4.6170 1.8975 24 6 2.4688 -5.3845 1.9379 25 6 2.5384 -4.8381 3.3788 26 6 4.0450 -4.9015 3.7359 27 6 4.7296 -4.5042 2.4044 28 6 3.8613 -5.1728 1.3186 29 1 -0.3634 -0.0057 1.0276 30 1 -0.3632 -0.8873 -0.5187 31 1 -0.3634 0.8927 -0.5090 32 1 1.8513 -2.7219 1.9914 33 1 -0.2416 -5.8807 1.6773 34 1 0.0724 -4.5514 2.8187 35 1 -0.6755 -3.4342 0.3348 36 1 -3.4808 -1.9240 -0.6537 37 1 2.2242 -6.4467 1.9527 38 1 2.1810 -3.8090 3.4142 39 1 1.9588 -5.4677 4.0540 40 1 4.3295 -5.9117 4.0302 41 1 4.2861 -4.1864 4.5225 42 1 5.7484 -4.8901 2.3694 43 1 4.7282 -3.4213 2.2807 44 1 4.2930 -6.1322 1.0336 45 1 3.7873 -4.5232 0.4464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278240764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:42 Heat of formation + Delta-G solvation = 27.217359 kcal Electronic energy + Delta-G solvation = -28961.850508 eV Core-core repulsion = 25041.404209 eV Total energy + Delta-G solvation = -3920.446299 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.45302 -39.62322 -37.70455 -36.84980 -35.07648 -33.35951 -32.54626 -31.64018 -30.67908 -29.53893 -28.61229 -27.27739 -26.12988 -23.55998 -22.46376 -21.91946 -21.43239 -20.36880 -19.55205 -19.10287 -17.77854 -17.10778 -16.34841 -15.90681 -15.61170 -15.23584 -15.09072 -14.56308 -14.52374 -14.25705 -13.47257 -13.36203 -13.26169 -13.18303 -12.89565 -12.81211 -12.60010 -12.11180 -11.98558 -11.88130 -11.66466 -11.63574 -11.11519 -10.99068 -10.93970 -10.82930 -10.71788 -10.60717 -10.50800 -10.38253 -10.25454 -10.03048 -9.67813 -9.54435 -9.43220 -8.84752 -8.64956 -8.47180 -6.86291 -5.73075 -3.00303 1.43261 1.59489 2.24124 2.89972 3.03571 3.42658 3.49471 3.50307 3.75183 4.58069 4.68207 4.70440 4.76274 4.86210 4.95566 5.19367 5.30036 5.37518 5.53731 5.56838 5.59962 5.70763 5.75828 5.78263 5.81822 5.92633 5.96142 5.98789 6.01097 6.05352 6.14179 6.22965 6.32196 6.39363 6.43642 6.50713 6.56306 6.59109 6.78980 7.01603 7.09114 7.28648 7.72134 7.98665 8.45914 8.73414 9.57762 10.17249 10.54029 11.49010 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009941 B = 0.005002 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.803676 B = 5596.520815 C = 7748.741487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.159 3.841 3 N -0.452 5.452 4 H 0.446 0.554 5 N -0.287 5.287 6 C 0.159 3.841 7 Cl 0.014 6.986 8 C -0.272 4.272 9 C 0.603 3.397 10 O -0.526 6.526 11 N -0.698 5.698 12 C 0.137 3.863 13 H 0.100 0.900 14 C 0.142 3.858 15 N -0.727 5.727 16 C -0.235 4.235 17 H 0.067 0.933 18 C -0.012 4.012 19 N -0.928 5.928 20 Si 0.903 3.097 21 H -0.292 1.292 22 H -0.293 1.293 23 H -0.284 1.284 24 C -0.098 4.098 25 C -0.117 4.117 26 C -0.124 4.124 27 C -0.122 4.122 28 C -0.118 4.118 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.396 0.604 33 H 0.026 0.974 34 H 0.023 0.977 35 H 0.388 0.612 36 H 0.253 0.747 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.190 3.053 5.282 16.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.027 3.973 3 N -0.162 5.162 4 H 0.292 0.708 5 N -0.113 5.113 6 C -0.033 4.033 7 Cl 0.042 6.958 8 C -0.287 4.287 9 C 0.387 3.613 10 O -0.401 6.401 11 N -0.348 5.348 12 C 0.032 3.968 13 H 0.118 0.882 14 C 0.013 3.987 15 N -0.372 5.372 16 C -0.366 4.366 17 H 0.085 0.915 18 C -0.208 4.208 19 N -0.577 5.577 20 Si 0.734 3.266 21 H -0.220 1.220 22 H -0.219 1.219 23 H -0.210 1.210 24 C -0.118 4.118 25 C -0.155 4.155 26 C -0.161 4.161 27 C -0.160 4.160 28 C -0.156 4.156 29 H 0.112 0.888 30 H 0.136 0.864 31 H 0.093 0.907 32 H 0.231 0.769 33 H 0.044 0.956 34 H 0.041 0.959 35 H 0.223 0.777 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.729 3.515 4.583 16.756 hybrid contribution -1.389 0.202 0.444 1.473 sum 14.340 3.717 5.027 15.643 Atomic orbital electron populations 1.20760 0.83959 1.06174 1.05183 1.21793 0.95487 0.85565 0.94407 1.45845 1.02924 1.08705 1.58682 0.70781 1.77049 0.96983 1.10688 1.26570 1.22490 0.88468 0.90482 1.01907 1.98398 1.35639 1.64991 1.96796 1.19824 0.90722 0.94948 1.23226 1.16961 0.76374 0.83924 0.84064 1.90810 1.49501 1.68661 1.31112 1.45759 1.70882 1.10267 1.07938 1.21359 0.93810 0.79998 1.01617 0.88192 1.21036 0.87440 0.95014 0.95168 1.42313 1.04142 1.50986 1.39765 1.19214 0.84726 1.20181 1.12516 0.91465 1.24663 0.97658 0.99970 0.98498 1.69652 1.33028 1.30839 1.24168 0.86259 0.85628 0.77439 0.77240 1.22007 1.21920 1.20962 1.22088 0.94798 1.00005 0.94862 1.22419 0.95917 1.01294 0.95844 1.22504 0.95637 1.00891 0.97106 1.22339 0.98193 1.00643 0.94818 1.22147 0.94422 1.00389 0.98610 0.88759 0.86410 0.90718 0.76887 0.95637 0.95932 0.77744 0.93757 0.89991 0.91556 0.91478 0.91834 0.92036 0.92453 0.91650 0.92315 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.50 10.25 36.01 0.37 -1.13 16 2 C 0.16 2.28 7.29 -81.60 -0.60 1.69 16 3 N -0.45 -5.43 7.28 33.86 0.25 -5.18 16 4 H 0.45 3.63 8.96 -182.73 -1.64 1.99 16 5 N -0.29 -4.08 12.64 33.18 0.42 -3.66 16 6 C 0.16 2.39 7.89 -16.91 -0.13 2.25 16 7 Cl 0.01 0.18 29.06 -51.86 -1.51 -1.32 16 8 C -0.27 -4.38 5.88 -105.04 -0.62 -5.00 16 9 C 0.60 10.84 6.26 -12.54 -0.08 10.76 16 10 O -0.53 -11.57 16.46 5.27 0.09 -11.49 16 11 N -0.70 -11.02 3.73 -54.89 -0.20 -11.23 16 12 C 0.14 2.22 2.03 -67.93 -0.14 2.08 16 13 H 0.10 1.89 6.94 -51.93 -0.36 1.53 16 14 C 0.14 2.73 5.84 -4.04 -0.02 2.71 16 15 N -0.73 -17.74 5.43 -59.91 -0.33 -18.06 16 16 C -0.23 -6.33 9.99 -15.06 -0.15 -6.48 16 17 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 19 N -0.93 -26.32 13.06 55.49 0.72 -25.59 16 20 Si 0.90 21.76 29.55 -169.99 -5.02 16.74 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C -0.10 -1.23 2.82 -89.51 -0.25 -1.48 16 25 C -0.12 -1.32 5.12 -25.04 -0.13 -1.45 16 26 C -0.12 -1.22 6.91 -24.70 -0.17 -1.39 16 27 C -0.12 -1.29 6.83 -25.07 -0.17 -1.46 16 28 C -0.12 -1.42 6.19 -25.61 -0.16 -1.57 16 29 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 30 H 0.12 2.26 7.96 -51.92 -0.41 1.85 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.40 5.70 6.98 -40.82 -0.28 5.41 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.02 0.42 7.11 -51.93 -0.37 0.05 16 35 H 0.39 10.12 6.84 -40.82 -0.28 9.84 16 36 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.79 5.97 -51.93 -0.31 0.48 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.73 8.02 -51.93 -0.42 0.31 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.96 7.07 -51.93 -0.37 0.59 16 LS Contribution 382.60 15.07 5.77 5.77 Total: -1.00 -31.62 382.60 -9.95 -41.57 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -7.79 Total: 13.36 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -2.34 Total: -0.90 kcal Atomic # 7 Polarization: -64.59 SS G_CDS: 0.86 Total: -63.73 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 17 Polarization: 0.18 SS G_CDS: -1.51 Total: -1.32 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.62 -9.95 -41.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278240764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.792 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds