Wall clock time and date at job start Sat Apr 11 2020 06:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34229 * 126.28585 * 2 1 4 4 H 0.96997 * 125.73567 * 359.97438 * 3 2 1 5 5 N 1.39936 * 108.52322 * 180.30142 * 3 2 1 6 6 C 1.30529 * 108.89495 * 359.72350 * 5 3 2 7 7 Cl 1.73595 * 126.00453 * 180.02562 * 6 5 3 8 8 C 1.38075 * 126.27609 * 179.84161 * 2 1 3 9 9 C 1.47384 * 126.42371 * 359.96853 * 8 2 1 10 10 O 1.21602 * 120.00016 * 269.71193 * 9 8 2 11 11 N 1.34777 * 119.99936 * 89.71070 * 9 8 2 12 12 C 1.46497 * 120.00127 * 184.93337 * 11 9 8 13 13 H 1.09000 * 109.47091 * 32.32194 * 12 11 9 14 14 C 1.52995 * 109.47426 * 152.32559 * 12 11 9 15 15 N 1.46503 * 109.46878 * 302.15308 * 14 12 11 16 16 C 1.36938 * 119.99952 * 179.97438 * 15 14 12 17 17 H 1.08004 * 120.00113 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00178 * 180.02562 * 16 15 14 19 19 N 1.31620 * 119.99781 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00365 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47291 * 89.99649 * 20 18 16 22 22 H 1.48504 * 109.46968 * 209.99696 * 20 18 16 23 23 H 1.48503 * 109.46760 * 329.99697 * 20 18 16 24 24 C 1.53008 * 109.46997 * 272.32186 * 12 11 9 25 25 C 1.54262 * 110.03399 * 299.36688 * 24 12 11 26 26 C 1.54886 * 104.19707 * 217.10260 * 25 24 12 27 27 C 1.54890 * 102.74659 * 37.94536 * 26 25 24 28 28 C 1.53880 * 110.03234 * 182.19822 * 24 12 11 29 29 H 1.08997 * 109.46812 * 270.15604 * 1 2 3 30 30 H 1.09002 * 109.46392 * 30.15542 * 1 2 3 31 31 H 1.08993 * 109.46994 * 150.15371 * 1 2 3 32 32 H 0.97005 * 119.99897 * 5.20721 * 11 9 8 33 33 H 1.08999 * 109.47651 * 62.15483 * 14 12 11 34 34 H 1.09006 * 109.47191 * 182.15920 * 14 12 11 35 35 H 0.96998 * 119.99997 * 0.02562 * 15 14 12 36 36 H 0.97001 * 120.00362 * 180.02562 * 19 18 16 37 37 H 1.09000 * 110.01008 * 60.81066 * 24 12 11 38 38 H 1.08996 * 110.48592 * 335.78549 * 25 24 12 39 39 H 1.09001 * 110.48287 * 98.42292 * 25 24 12 40 40 H 1.08996 * 110.75742 * 279.63037 * 26 25 24 41 41 H 1.08999 * 110.91433 * 156.33172 * 26 25 24 42 42 H 1.09004 * 110.48383 * 203.37988 * 27 26 25 43 43 H 1.08998 * 110.60191 * 80.78940 * 27 26 25 44 44 H 1.08997 * 110.03301 * 238.57127 * 28 24 12 45 45 H 1.09004 * 110.03133 * 0.02562 * 28 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3015 1.0820 0.0000 4 1 2.0021 2.0046 -0.0004 5 7 3.6341 0.6551 -0.0070 6 6 3.6599 -0.6499 -0.0052 7 17 5.0841 -1.6425 -0.0112 8 6 2.3240 -1.1131 0.0031 9 6 1.8857 -2.5203 0.0076 10 8 1.7104 -3.0991 1.0626 11 7 1.6792 -3.1655 -1.1575 12 6 1.1406 -4.5279 -1.1549 13 1 0.4657 -4.6501 -0.3077 14 6 0.3756 -4.7764 -2.4564 15 7 -0.6934 -3.7838 -2.5916 16 6 -1.5157 -3.8080 -3.6863 17 1 -1.3764 -4.5590 -4.4499 18 6 -2.5282 -2.8672 -3.8148 19 7 -2.6983 -1.9523 -2.8840 20 14 -3.6504 -2.9006 -5.3078 21 1 -4.8262 -3.7622 -5.0242 22 1 -4.1094 -1.5216 -5.6129 23 1 -2.9077 -3.4444 -6.4731 24 6 2.2905 -5.5307 -1.0398 25 6 3.2458 -5.3795 -2.2416 26 6 3.6834 -6.8299 -2.5638 27 6 2.3855 -7.6401 -2.3224 28 6 1.7435 -6.9681 -1.0912 29 1 -0.3633 0.0028 1.0276 30 1 -0.3632 0.8886 -0.5163 31 1 -0.3633 -0.8913 -0.5114 32 1 1.8909 -2.7293 -1.9977 33 1 1.0589 -4.6918 -3.3014 34 1 -0.0575 -5.7766 -2.4380 35 1 -0.8183 -3.1091 -1.9060 36 1 -3.4061 -1.2951 -2.9735 37 1 2.8331 -5.3707 -0.1081 38 1 2.7231 -4.9410 -3.0916 39 1 4.1089 -4.7723 -1.9687 40 1 4.4731 -7.1546 -1.8863 41 1 4.0062 -6.9176 -3.6012 42 1 2.6209 -8.6827 -2.1085 43 1 1.7229 -7.5687 -3.1849 44 1 2.0214 -7.5059 -0.1848 45 1 0.6589 -6.9512 -1.1985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278240765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:45 Heat of formation + Delta-G solvation = 5.946149 kcal Electronic energy + Delta-G solvation = -28416.096643 eV Core-core repulsion = 24494.727955 eV Total energy + Delta-G solvation = -3921.368688 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.63230 -40.89397 -39.13860 -37.95925 -36.66507 -35.14036 -33.74609 -33.10980 -32.28248 -30.78531 -29.49208 -28.49904 -27.72039 -25.24226 -24.00008 -23.07726 -22.96567 -21.46068 -20.84490 -20.03737 -19.18784 -18.82045 -17.64371 -17.52755 -16.58561 -16.37436 -16.31998 -16.25130 -16.11360 -15.36619 -15.17487 -15.06020 -14.93399 -14.31665 -14.20208 -14.07209 -13.92087 -13.47325 -13.33402 -13.01856 -13.00716 -12.82131 -12.73927 -12.61411 -12.17766 -12.07436 -11.94948 -11.85518 -11.82867 -11.78974 -11.71947 -11.35464 -11.18434 -10.98109 -10.81263 -10.56386 -9.93714 -9.88626 -8.89573 -7.87020 -5.14084 0.32802 0.43605 1.00628 1.51748 1.53107 1.53805 1.60067 1.81342 2.39460 2.60936 3.46750 3.48955 3.66973 3.73934 3.79360 3.83161 3.96618 4.07244 4.15906 4.27188 4.39905 4.57481 4.60611 4.66518 4.70813 4.75088 4.76611 4.81569 4.91509 4.92190 4.98677 5.12967 5.17251 5.17837 5.23350 5.33857 5.39685 5.54104 5.57280 5.60097 5.67848 5.94858 6.22364 6.34575 6.58490 7.24953 7.42586 8.14910 8.40991 9.35654 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.007870 B = 0.005053 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3556.753765 B = 5539.830034 C = 8290.485338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.167 3.833 3 N -0.428 5.428 4 H 0.465 0.535 5 N -0.290 5.290 6 C 0.152 3.848 7 Cl 0.023 6.977 8 C -0.299 4.299 9 C 0.605 3.395 10 O -0.572 6.572 11 N -0.691 5.691 12 C 0.155 3.845 13 H 0.062 0.938 14 C 0.148 3.852 15 N -0.739 5.739 16 C -0.240 4.240 17 H 0.073 0.927 18 C -0.065 4.065 19 N -0.958 5.958 20 Si 0.963 3.037 21 H -0.293 1.293 22 H -0.297 1.297 23 H -0.273 1.273 24 C -0.090 4.090 25 C -0.119 4.119 26 C -0.117 4.117 27 C -0.120 4.120 28 C -0.121 4.121 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.406 0.594 33 H 0.040 0.960 34 H 0.039 0.961 35 H 0.375 0.625 36 H 0.250 0.750 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.371 0.184 3.809 13.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.033 3.967 3 N -0.140 5.140 4 H 0.315 0.685 5 N -0.116 5.116 6 C -0.041 4.041 7 Cl 0.051 6.949 8 C -0.314 4.314 9 C 0.390 3.610 10 O -0.451 6.451 11 N -0.339 5.339 12 C 0.050 3.950 13 H 0.080 0.920 14 C 0.022 3.978 15 N -0.382 5.382 16 C -0.372 4.372 17 H 0.091 0.909 18 C -0.258 4.258 19 N -0.608 5.608 20 Si 0.794 3.206 21 H -0.221 1.221 22 H -0.224 1.224 23 H -0.198 1.198 24 C -0.110 4.110 25 C -0.157 4.157 26 C -0.155 4.155 27 C -0.157 4.157 28 C -0.159 4.159 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.093 0.907 32 H 0.241 0.759 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.208 0.792 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.019 0.655 4.371 14.699 hybrid contribution -1.292 0.300 -0.708 1.503 sum 12.728 0.955 3.662 13.278 Atomic orbital electron populations 1.20669 0.84065 1.05813 1.05005 1.21649 0.95490 0.85660 0.93875 1.45812 1.01934 1.09306 1.56926 0.68466 1.77037 0.97904 1.10287 1.26369 1.22583 0.88648 0.90796 1.02053 1.98398 1.34934 1.64837 1.96770 1.19786 0.91790 0.94394 1.25463 1.17218 0.75766 0.84523 0.83485 1.90733 1.53205 1.68786 1.32390 1.45859 1.63809 1.15957 1.08311 1.21133 0.94512 0.81121 0.98212 0.91997 1.21164 0.89433 0.92837 0.94376 1.42464 1.35487 1.35414 1.24823 1.19530 1.08070 1.10545 0.99052 0.90886 1.25357 1.01093 0.98508 1.00840 1.69769 1.35261 1.19977 1.35839 0.85300 0.79160 0.76124 0.80065 1.22076 1.22381 1.19824 1.22012 0.95319 0.94461 0.99243 1.22463 0.98180 0.97878 0.97165 1.22451 0.97312 0.94033 1.01684 1.22331 0.96722 0.99370 0.97282 1.22221 1.00392 0.94027 0.99258 0.87843 0.87555 0.90741 0.75883 0.94202 0.94346 0.79239 0.94137 0.91845 0.91345 0.91938 0.91077 0.90793 0.90526 0.91972 0.91242 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.39 10.25 71.24 0.73 -1.66 16 2 C 0.17 4.35 7.29 42.16 0.31 4.66 16 3 N -0.43 -9.22 7.28 -46.79 -0.34 -9.56 16 4 H 0.47 6.13 8.96 -213.43 -1.91 4.22 16 5 N -0.29 -7.78 12.64 -48.95 -0.62 -8.40 16 6 C 0.15 4.40 7.89 85.66 0.68 5.08 16 7 Cl 0.02 0.59 29.19 -2.72 -0.08 0.51 16 8 C -0.30 -9.22 5.88 -20.13 -0.12 -9.34 16 9 C 0.61 21.02 7.15 86.65 0.62 21.64 16 10 O -0.57 -23.48 16.78 -4.04 -0.07 -23.55 16 11 N -0.69 -22.44 4.25 -445.85 -1.90 -24.33 16 12 C 0.16 5.14 1.82 44.99 0.08 5.22 16 13 H 0.06 2.39 7.57 -2.39 -0.02 2.38 16 14 C 0.15 5.45 5.27 86.38 0.46 5.91 16 15 N -0.74 -34.56 5.46 -343.45 -1.87 -36.44 16 16 C -0.24 -12.50 9.99 84.03 0.84 -11.66 16 17 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 18 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 19 N -0.96 -53.92 13.06 21.65 0.28 -53.64 16 20 Si 0.96 43.91 29.55 68.60 2.03 45.94 16 21 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 22 H -0.30 -13.66 7.11 99.48 0.71 -12.96 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 C -0.09 -2.48 2.99 -10.07 -0.03 -2.51 16 25 C -0.12 -2.85 5.83 31.67 0.18 -2.67 16 26 C -0.12 -2.33 6.91 31.88 0.22 -2.11 16 27 C -0.12 -2.49 6.83 31.67 0.22 -2.28 16 28 C -0.12 -2.98 5.93 31.32 0.19 -2.79 16 29 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.07 2.43 7.96 -2.39 -0.02 2.42 16 32 H 0.41 12.80 8.62 -92.70 -0.80 12.00 16 33 H 0.04 1.42 5.98 -2.39 -0.01 1.40 16 34 H 0.04 1.43 6.41 -2.38 -0.02 1.42 16 35 H 0.38 18.82 7.43 -92.71 -0.69 18.13 16 36 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 37 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.07 1.75 5.68 -2.39 -0.01 1.74 16 39 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.06 1.65 6.18 -2.38 -0.01 1.64 16 Total: -1.00 -65.37 383.27 -0.08 -65.45 By element: Atomic # 1 Polarization: 41.89 SS G_CDS: -2.34 Total: 39.55 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 4.84 Total: 4.47 kcal Atomic # 7 Polarization: -127.92 SS G_CDS: -4.45 Total: -132.37 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.07 Total: -23.55 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 17 Polarization: 0.59 SS G_CDS: -0.08 Total: 0.51 kcal Total: -65.37 -0.08 -65.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278240765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.392 kcal (2) G-P(sol) polarization free energy of solvation -65.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds