Wall clock time and date at job start Sat Apr 11 2020 06:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 N 1.34228 * 126.28226 * 264.69359 * 3 2 1 5 5 H 0.97004 * 125.74004 * 359.96926 * 4 3 2 6 6 N 1.39935 * 108.52367 * 179.84947 * 4 3 2 7 7 C 1.30525 * 108.89494 * 0.41973 * 6 4 3 8 8 Cl 1.73596 * 126.00854 * 179.77269 * 7 6 4 9 9 C 1.38066 * 126.27886 * 85.00072 * 3 2 1 10 10 C 1.47386 * 126.42328 * 0.02562 * 9 3 2 11 11 O 1.21609 * 119.99740 * 90.00372 * 10 9 3 12 12 N 1.34770 * 120.00379 * 269.99875 * 10 9 3 13 13 C 1.47493 * 127.03418 * 0.02759 * 12 10 9 14 14 C 1.53999 * 107.08420 * 154.51273 * 13 12 10 15 15 H 1.09000 * 110.32851 * 242.40930 * 14 13 12 16 16 C 1.53004 * 110.32264 * 120.30146 * 14 13 12 17 17 C 1.54613 * 105.04579 * 1.30872 * 14 13 12 18 18 H 1.08995 * 110.73855 * 263.50888 * 17 14 13 19 19 C 1.52997 * 110.73802 * 140.36701 * 17 14 13 20 20 N 1.46505 * 109.47286 * 174.99760 * 19 17 14 21 21 C 1.36931 * 120.00234 * 179.97438 * 20 19 17 22 22 H 1.07998 * 119.99966 * 0.02562 * 21 20 19 23 23 C 1.38819 * 119.99864 * 180.02562 * 21 20 19 24 24 N 1.31613 * 119.99996 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99826 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47280 * 89.99900 * 25 23 21 27 27 H 1.48494 * 109.47035 * 210.00303 * 25 23 21 28 28 H 1.48509 * 109.47084 * 330.00017 * 25 23 21 29 29 C 1.48119 * 127.03909 * 179.71238 * 12 10 9 30 30 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 31 31 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 32 32 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 34 34 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 35 35 H 1.09001 * 109.91291 * 273.87742 * 13 12 10 36 36 H 1.09001 * 109.90976 * 35.15142 * 13 12 10 37 37 H 1.09006 * 109.47129 * 61.45373 * 16 14 13 38 38 H 1.09004 * 109.46797 * 181.44834 * 16 14 13 39 39 H 1.08994 * 109.47622 * 301.45064 * 16 14 13 40 40 H 1.09002 * 109.47636 * 294.99698 * 19 17 14 41 41 H 1.08997 * 109.47573 * 55.00023 * 19 17 14 42 42 H 0.97004 * 119.99818 * 359.97438 * 20 19 17 43 43 H 0.96999 * 120.00050 * 180.02562 * 24 23 21 44 44 H 1.09009 * 110.65633 * 337.76398 * 29 12 10 45 45 H 1.08992 * 110.66541 * 100.88697 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3915 2.1363 -1.0774 5 1 2.3725 1.8255 -1.9961 6 7 2.7952 3.4071 -0.6527 7 6 2.6966 3.4694 0.6473 8 17 3.0893 4.8413 1.6360 9 6 2.2132 2.2234 1.1088 10 6 1.9520 1.8509 2.5107 11 8 2.8336 1.3479 3.1805 12 7 0.7363 2.0678 3.0503 13 6 -0.4376 2.6633 2.3849 14 6 -1.6873 2.1332 3.1122 15 1 -2.3042 1.5497 2.4288 16 6 -2.4948 3.2943 3.6960 17 6 -1.1410 1.2332 4.2445 18 1 -1.1365 0.1872 3.9379 19 6 -1.9586 1.4168 5.5246 20 7 -1.4954 0.4679 6.5403 21 6 -2.0833 0.4474 7.7768 22 1 -2.8886 1.1303 8.0033 23 6 -1.6440 -0.4514 8.7393 24 7 -0.6622 -1.2834 8.4634 25 14 -2.4464 -0.4799 10.4259 26 1 -3.5870 -1.4308 10.4155 27 1 -1.4514 -0.9115 11.4402 28 1 -2.9389 0.8800 10.7629 29 6 0.3036 1.7511 4.4310 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3635 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 -0.3963 3.7498 2.4614 36 1 -0.4625 2.3630 1.3373 37 1 -2.8291 3.9464 2.8890 38 1 -3.3612 2.9025 4.2290 39 1 -1.8697 3.8611 4.3858 40 1 -1.8321 2.4346 5.8938 41 1 -3.0122 1.2358 5.3120 42 1 -0.7723 -0.1458 6.3367 43 1 -0.3555 -1.9116 9.1358 44 1 0.9362 0.9761 4.8640 45 1 0.3116 2.6470 5.0517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279102727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:53 Heat of formation + Delta-G solvation = 40.569803 kcal Electronic energy + Delta-G solvation = -28083.526087 eV Core-core repulsion = 24163.658794 eV Total energy + Delta-G solvation = -3919.867293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.91222 -39.83264 -37.79911 -37.09330 -34.69722 -34.49043 -32.87908 -31.72712 -31.14715 -29.97052 -28.87188 -26.51415 -25.54565 -24.39124 -23.43485 -22.24977 -22.07743 -21.50717 -19.19066 -18.99973 -17.94491 -17.08599 -16.72798 -15.98309 -15.64748 -15.41868 -15.28955 -15.04483 -14.65357 -14.46872 -14.19778 -13.74852 -13.36638 -13.27766 -13.07253 -12.81159 -12.44168 -12.36625 -12.26657 -12.18942 -12.11569 -11.85855 -11.72301 -11.66433 -11.44869 -11.00334 -10.96254 -10.82947 -10.50969 -10.38406 -10.23696 -10.00236 -9.88767 -9.79781 -9.65187 -9.06316 -8.84654 -8.56226 -6.89263 -5.73082 -3.02115 1.16183 1.17923 1.86928 2.50222 2.58825 3.15668 3.45788 3.50849 3.52879 4.05073 4.35800 4.44023 4.61291 4.64081 4.71187 4.78634 4.89011 4.97010 5.05594 5.14821 5.31648 5.45854 5.46621 5.50049 5.56489 5.57243 5.61554 5.63410 5.79478 5.86301 5.91707 6.00125 6.11098 6.16637 6.23438 6.32971 6.44058 6.51927 6.58908 6.73621 6.87140 6.91609 7.63396 7.72503 8.23601 8.45281 9.56513 10.14209 10.48256 11.49565 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015966 B = 0.002858 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.324040 B = 9794.597002 C = 9991.366563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.070 4.070 3 C 0.146 3.854 4 N -0.447 5.447 5 H 0.448 0.552 6 N -0.277 5.277 7 C 0.160 3.840 8 Cl 0.022 6.978 9 C -0.258 4.258 10 C 0.612 3.388 11 O -0.525 6.525 12 N -0.609 5.609 13 C 0.105 3.895 14 C -0.098 4.098 15 H 0.081 0.919 16 C -0.145 4.145 17 C -0.102 4.102 18 H 0.082 0.918 19 C 0.165 3.835 20 N -0.734 5.734 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.931 5.931 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.116 3.884 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.025 0.975 41 H 0.023 0.977 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.090 0.910 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.891 7.951 -23.895 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.109 4.109 3 C 0.014 3.986 4 N -0.156 5.156 5 H 0.294 0.706 6 N -0.102 5.102 7 C -0.033 4.033 8 Cl 0.050 6.950 9 C -0.273 4.273 10 C 0.398 3.602 11 O -0.401 6.401 12 N -0.342 5.342 13 C -0.018 4.018 14 C -0.117 4.117 15 H 0.099 0.901 16 C -0.203 4.203 17 C -0.122 4.122 18 H 0.101 0.899 19 C 0.037 3.963 20 N -0.378 5.378 21 C -0.372 4.372 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.005 4.005 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.043 0.957 41 H 0.041 0.959 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.108 0.892 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.742 8.502 -24.360 25.946 hybrid contribution -0.301 -0.573 1.079 1.259 sum 2.441 7.929 -23.280 24.714 Atomic orbital electron populations 1.21861 0.92854 1.03433 1.02975 1.20437 0.97439 0.87851 1.05211 1.21452 0.95867 0.95324 0.85959 1.45824 1.51630 1.09114 1.09017 0.70616 1.77147 1.23432 0.98876 1.10791 1.22550 1.00129 0.90100 0.90506 1.98429 1.92243 1.39358 1.65002 1.19755 1.18345 0.94563 0.94655 1.16638 0.80950 0.78083 0.84520 1.90841 1.43638 1.43462 1.62137 1.48745 1.10204 1.60961 1.14289 1.22246 0.84826 0.97969 0.96749 1.22033 0.95236 0.97278 0.97196 0.90079 1.21901 1.00490 0.97214 1.00653 1.22448 0.94346 0.99409 0.95976 0.89950 1.20705 0.95033 0.93791 0.86739 1.42404 1.42875 1.41790 1.10730 1.19193 1.13358 1.15293 0.89308 0.91224 1.24739 0.98844 0.98877 0.98432 1.69657 1.29709 1.24295 1.34293 0.86213 0.78293 0.77483 0.84322 1.21798 1.21801 1.20783 1.22523 0.95015 1.01319 0.81684 0.91151 0.92410 0.90803 0.89557 0.88055 0.91407 0.91282 0.93079 0.91340 0.92041 0.95697 0.95904 0.78263 0.93501 0.89164 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.88 37.16 0.37 -0.64 16 2 C -0.07 -0.50 6.27 -27.88 -0.17 -0.68 16 3 C 0.15 1.39 6.55 -81.61 -0.53 0.85 16 4 N -0.45 -3.63 7.28 33.86 0.25 -3.38 16 5 H 0.45 1.87 8.96 -182.72 -1.64 0.23 16 6 N -0.28 -3.15 12.64 33.18 0.42 -2.73 16 7 C 0.16 2.02 7.89 -16.91 -0.13 1.89 16 8 Cl 0.02 0.27 29.19 -51.86 -1.51 -1.25 16 9 C -0.26 -3.30 4.88 -105.04 -0.51 -3.81 16 10 C 0.61 9.49 7.33 -12.54 -0.09 9.40 16 11 O -0.53 -10.33 17.32 5.27 0.09 -10.24 16 12 N -0.61 -8.53 3.29 -171.25 -0.56 -9.10 16 13 C 0.11 1.15 5.95 -2.98 -0.02 1.14 16 14 C -0.10 -1.09 3.52 -89.25 -0.31 -1.41 16 15 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 16 C -0.15 -1.54 7.79 37.16 0.29 -1.25 16 17 C -0.10 -1.53 2.98 -88.94 -0.27 -1.79 16 18 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 19 C 0.17 3.08 4.45 -4.04 -0.02 3.06 16 20 N -0.73 -18.06 5.52 -59.91 -0.33 -18.39 16 21 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 25 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 29 C 0.12 1.87 6.44 -2.31 -0.01 1.85 16 30 H 0.07 0.58 5.97 -51.93 -0.31 0.27 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 35 H 0.07 0.72 7.68 -51.93 -0.40 0.32 16 36 H 0.07 0.66 6.09 -51.93 -0.32 0.34 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.78 6.77 -51.93 -0.35 0.42 16 39 H 0.06 0.70 7.52 -51.93 -0.39 0.31 16 40 H 0.03 0.47 6.82 -51.93 -0.35 0.12 16 41 H 0.02 0.43 7.38 -51.93 -0.38 0.05 16 42 H 0.38 10.06 7.67 -40.82 -0.31 9.75 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.09 1.70 7.85 -51.92 -0.41 1.30 16 45 H 0.08 1.24 7.94 -51.93 -0.41 0.83 16 LS Contribution 382.31 15.07 5.76 5.76 Total: -1.00 -34.30 382.31 -9.63 -43.93 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -7.78 Total: 4.16 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -1.67 Total: 1.37 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: 0.50 Total: -61.09 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.51 Total: -1.25 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.30 -9.63 -43.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279102727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.503 kcal (2) G-P(sol) polarization free energy of solvation -34.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds