Wall clock time and date at job start Sat Apr 11 2020 06:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50704 * 109.47364 * 2 1 4 4 N 1.34231 * 126.27732 * 265.14470 * 3 2 1 5 5 H 0.97004 * 125.74151 * 0.03506 * 4 3 2 6 6 N 1.39925 * 108.52523 * 180.29770 * 4 3 2 7 7 C 1.30530 * 108.89026 * 359.73720 * 6 4 3 8 8 Cl 1.73604 * 126.00421 * 180.02562 * 7 6 4 9 9 C 1.38061 * 126.28290 * 84.99518 * 3 2 1 10 10 C 1.47387 * 126.42567 * 359.96439 * 9 3 2 11 11 O 1.21600 * 119.99876 * 269.71512 * 10 9 3 12 12 N 1.34781 * 119.99974 * 89.71344 * 10 9 3 13 13 C 1.48146 * 127.83592 * 0.02584 * 12 10 9 14 14 C 1.54389 * 104.71947 * 219.64451 * 13 12 10 15 15 H 1.09003 * 110.34006 * 95.05014 * 14 13 12 16 16 C 1.52994 * 110.34346 * 217.20744 * 14 13 12 17 17 C 1.54289 * 104.96102 * 336.07694 * 14 13 12 18 18 H 1.08996 * 110.34304 * 118.86596 * 17 14 13 19 19 C 1.53002 * 110.34289 * 241.13112 * 17 14 13 20 20 N 1.46499 * 109.46964 * 185.00094 * 19 17 14 21 21 C 1.36936 * 119.99801 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99865 * 0.02562 * 21 20 19 23 23 C 1.38809 * 120.00012 * 179.97438 * 21 20 19 24 24 N 1.31619 * 120.00152 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00227 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47061 * 59.99966 * 25 23 21 27 27 H 1.48499 * 109.47434 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47061 * 300.00359 * 25 23 21 29 29 C 1.48427 * 127.98028 * 180.11564 * 12 10 9 30 30 H 1.09005 * 109.47176 * 300.00338 * 1 2 3 31 31 H 1.08996 * 109.47124 * 60.00303 * 1 2 3 32 32 H 1.09000 * 109.47615 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47151 * 239.99307 * 2 1 3 34 34 H 1.09004 * 109.46816 * 119.99532 * 2 1 3 35 35 H 1.09002 * 110.40776 * 100.80198 * 13 12 10 36 36 H 1.09002 * 110.40863 * 338.48606 * 13 12 10 37 37 H 1.09001 * 109.47260 * 58.54481 * 16 14 13 38 38 H 1.09000 * 109.47306 * 178.54617 * 16 14 13 39 39 H 1.09004 * 109.46825 * 298.54469 * 16 14 13 40 40 H 1.09003 * 109.46396 * 304.99705 * 19 17 14 41 41 H 1.09001 * 109.46979 * 64.99395 * 19 17 14 42 42 H 0.97000 * 120.00123 * 359.97438 * 20 19 17 43 43 H 0.96997 * 120.00680 * 179.97438 * 24 23 21 44 44 H 1.09004 * 110.39413 * 21.57624 * 29 12 10 45 45 H 1.09000 * 110.39150 * 259.16408 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3835 2.1391 -1.0782 5 1 2.3568 1.8309 -1.9976 6 7 2.8001 3.4052 -0.6526 7 6 2.7032 3.4670 0.6477 8 17 3.1045 4.8359 1.6370 9 6 2.2132 2.2235 1.1087 10 6 1.9507 1.8516 2.5105 11 8 0.8551 2.0532 2.9981 12 7 2.9250 1.2881 3.2520 13 6 4.3109 0.9671 2.8387 14 6 4.6104 -0.3972 3.4965 15 1 4.4096 -1.2078 2.7959 16 6 6.0643 -0.4519 3.9694 17 6 3.6509 -0.4773 4.7021 18 1 2.9771 -1.3273 4.5942 19 6 4.4433 -0.5872 6.0062 20 7 3.5179 -0.7819 7.1250 21 6 4.0018 -0.9081 8.3998 22 1 5.0657 -0.8637 8.5804 23 6 3.1249 -1.0920 9.4600 24 7 1.8283 -1.1457 9.2400 25 14 3.7849 -1.2634 11.1991 26 1 4.5386 -0.0376 11.5655 27 1 2.6529 -1.4495 12.1421 28 1 4.6879 -2.4401 11.2721 29 6 2.8557 0.8457 4.6671 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8932 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 5.0023 1.7258 3.2055 36 1 4.3753 0.8881 1.7535 37 1 6.2465 0.3558 4.6782 38 1 6.2530 -1.4099 4.4540 39 1 6.7294 -0.3407 3.1130 40 1 5.1250 -1.4358 5.9466 41 1 5.0149 0.3277 6.1623 42 1 2.5623 -0.8215 6.9628 43 1 1.2155 -1.2746 9.9807 44 1 1.8201 0.6745 4.9613 45 1 3.3198 1.5853 5.3194 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279102728.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:57 Heat of formation + Delta-G solvation = 42.476142 kcal Electronic energy + Delta-G solvation = -27883.560487 eV Core-core repulsion = 23963.775859 eV Total energy + Delta-G solvation = -3919.784628 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.91211 -39.77704 -37.81382 -37.08839 -34.61192 -34.52706 -32.90490 -31.74394 -31.13566 -30.02308 -28.80181 -26.55588 -25.28535 -24.44358 -23.47178 -22.26166 -22.12494 -21.59671 -19.14065 -18.84184 -18.03730 -17.02487 -16.72725 -15.78818 -15.70049 -15.59021 -15.42247 -14.94338 -14.62634 -14.50089 -14.03757 -13.64949 -13.59232 -13.31889 -13.09661 -12.82330 -12.40088 -12.35084 -12.18436 -12.10661 -11.91688 -11.90306 -11.71197 -11.66724 -11.58417 -11.00439 -10.95395 -10.82134 -10.49615 -10.42578 -10.18673 -9.99381 -9.87462 -9.80042 -9.64965 -9.07039 -8.83227 -8.60195 -6.88954 -5.72959 -3.02052 1.16088 1.17054 1.86072 2.49197 2.58557 3.14205 3.46283 3.50671 3.51905 4.03661 4.34930 4.44990 4.60814 4.65179 4.71505 4.78841 4.91409 5.00180 5.05156 5.17681 5.35792 5.45657 5.46607 5.50509 5.55190 5.59317 5.61414 5.65572 5.81022 5.87751 5.90569 5.99533 6.10677 6.16343 6.21108 6.35833 6.44632 6.54599 6.57963 6.76271 6.87507 6.90856 7.64664 7.71961 8.22998 8.45527 9.56569 10.14406 10.48424 11.49636 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015446 B = 0.002804 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.319747 B = 9982.457407 C =10188.523608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.068 4.068 3 C 0.145 3.855 4 N -0.447 5.447 5 H 0.448 0.552 6 N -0.277 5.277 7 C 0.159 3.841 8 Cl 0.023 6.977 9 C -0.257 4.257 10 C 0.614 3.386 11 O -0.526 6.526 12 N -0.613 5.613 13 C 0.107 3.893 14 C -0.097 4.097 15 H 0.076 0.924 16 C -0.146 4.146 17 C -0.104 4.104 18 H 0.081 0.919 19 C 0.162 3.838 20 N -0.734 5.734 21 C -0.241 4.241 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.287 1.287 29 C 0.116 3.884 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.049 0.951 40 H 0.027 0.973 41 H 0.023 0.977 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.086 0.914 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.898 3.737 -25.185 25.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 C 0.013 3.987 4 N -0.156 5.156 5 H 0.294 0.706 6 N -0.102 5.102 7 C -0.033 4.033 8 Cl 0.051 6.949 9 C -0.272 4.272 10 C 0.400 3.600 11 O -0.402 6.402 12 N -0.346 5.346 13 C -0.016 4.016 14 C -0.117 4.117 15 H 0.095 0.905 16 C -0.203 4.203 17 C -0.124 4.124 18 H 0.100 0.900 19 C 0.035 3.965 20 N -0.378 5.378 21 C -0.372 4.372 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.005 4.005 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.044 0.956 41 H 0.041 0.959 42 H 0.217 0.783 43 H 0.066 0.934 44 H 0.104 0.896 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.676 4.685 -25.766 26.445 hybrid contribution -0.070 -0.429 1.175 1.253 sum 3.606 4.256 -24.591 25.216 Atomic orbital electron populations 1.21780 0.92734 1.03076 1.03305 1.20416 0.97663 0.87755 1.04856 1.21452 0.96059 0.95189 0.86003 1.45819 1.51492 1.09338 1.08943 0.70620 1.77154 1.23301 0.99007 1.10755 1.22567 0.99867 0.90306 0.90572 1.98434 1.91931 1.39679 1.64904 1.19743 1.18411 0.94439 0.94631 1.16614 0.83039 0.76982 0.83340 1.90826 1.23008 1.53827 1.72496 1.49016 1.11787 1.59999 1.13796 1.22470 0.82931 0.96759 0.99422 1.22047 0.96187 0.96373 0.97077 0.90507 1.21895 0.94171 1.03361 1.00917 1.22335 0.97067 0.97515 0.95469 0.90050 1.20847 0.92397 0.97916 0.85356 1.42410 1.05330 1.87813 1.02277 1.19150 0.92123 1.41908 0.84033 0.91279 1.24736 0.95323 1.02884 0.97927 1.69645 1.00810 1.56719 1.30836 0.86288 0.77423 0.77852 0.84721 1.21288 1.21726 1.21335 1.22537 1.02326 0.95457 0.80175 0.90941 0.92525 0.91038 0.89620 0.88316 0.90786 0.91127 0.91580 0.91459 0.93208 0.95581 0.95918 0.78283 0.93445 0.89565 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 37.15 0.37 -0.76 16 2 C -0.07 -0.47 6.27 -27.89 -0.17 -0.64 16 3 C 0.15 1.35 6.55 -81.61 -0.53 0.81 16 4 N -0.45 -3.57 7.28 33.86 0.25 -3.33 16 5 H 0.45 1.81 8.96 -182.73 -1.64 0.17 16 6 N -0.28 -3.14 12.64 33.18 0.42 -2.72 16 7 C 0.16 2.02 7.89 -16.91 -0.13 1.88 16 8 Cl 0.02 0.28 29.19 -51.86 -1.51 -1.23 16 9 C -0.26 -3.25 4.78 -105.04 -0.50 -3.75 16 10 C 0.61 9.44 7.36 -12.53 -0.09 9.34 16 11 O -0.53 -10.13 17.39 5.28 0.09 -10.04 16 12 N -0.61 -8.67 3.33 -170.34 -0.57 -9.24 16 13 C 0.11 1.20 6.44 -2.41 -0.02 1.19 16 14 C -0.10 -1.10 3.66 -89.22 -0.33 -1.42 16 15 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 16 C -0.15 -1.55 7.91 37.15 0.29 -1.25 16 17 C -0.10 -1.58 3.10 -89.21 -0.28 -1.85 16 18 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 19 C 0.16 3.03 4.39 -4.04 -0.02 3.02 16 20 N -0.73 -18.07 5.48 -59.91 -0.33 -18.40 16 21 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 22 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 25 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 C 0.12 1.89 6.42 -2.25 -0.01 1.88 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.10 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.07 0.81 7.86 -51.93 -0.41 0.40 16 36 H 0.07 0.69 7.44 -51.93 -0.39 0.30 16 37 H 0.07 0.76 6.75 -51.93 -0.35 0.41 16 38 H 0.07 0.76 6.86 -51.93 -0.36 0.40 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.03 0.49 6.57 -51.93 -0.34 0.15 16 41 H 0.02 0.43 6.86 -51.93 -0.36 0.08 16 42 H 0.38 10.04 7.61 -40.82 -0.31 9.73 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.09 1.59 7.89 -51.93 -0.41 1.18 16 45 H 0.08 1.37 7.75 -51.93 -0.40 0.97 16 LS Contribution 385.17 15.07 5.80 5.80 Total: -1.00 -34.18 385.17 -9.70 -43.88 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.88 Total: 4.22 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -1.67 Total: 1.19 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: 0.50 Total: -61.16 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -1.51 Total: -1.23 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.18 -9.70 -43.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279102728.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.355 kcal (2) G-P(sol) polarization free energy of solvation -34.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds