Wall clock time and date at job start Sat Apr 11 2020 06:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35464 * 126.43267 * 2 1 4 4 Cl 1.73605 * 127.24145 * 359.97438 * 3 2 1 5 5 C 1.41548 * 105.52223 * 180.14009 * 3 2 1 6 6 C 1.47670 * 126.46267 * 179.83795 * 5 3 2 7 7 O 1.21576 * 119.99692 * 359.71944 * 6 5 3 8 8 N 1.34774 * 119.99880 * 179.71181 * 6 5 3 9 9 C 1.48140 * 127.84215 * 359.97438 * 8 6 5 10 10 C 1.54390 * 104.61751 * 140.41099 * 9 8 6 11 11 H 1.09004 * 110.34241 * 142.74048 * 10 9 8 12 12 C 1.52997 * 110.34521 * 264.99622 * 10 9 8 13 13 C 1.54283 * 104.96027 * 23.87293 * 10 9 8 14 14 H 1.08994 * 110.34422 * 118.97437 * 13 10 9 15 15 C 1.53004 * 110.34241 * 241.12630 * 13 10 9 16 16 N 1.46499 * 109.47198 * 184.99856 * 15 13 10 17 17 C 1.36939 * 119.99933 * 180.27608 * 16 15 13 18 18 H 1.08001 * 119.99700 * 359.72658 * 17 16 15 19 19 C 1.38810 * 120.00095 * 179.71972 * 17 16 15 20 20 N 1.31624 * 119.99740 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47173 * 60.00435 * 21 19 17 23 23 H 1.48497 * 109.47172 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47132 * 300.00314 * 21 19 17 25 25 C 1.48150 * 127.83470 * 179.97438 * 8 6 5 26 26 N 1.31826 * 107.07836 * 359.58226 * 5 3 2 27 27 N 1.28470 * 110.13593 * 0.26051 * 26 5 3 28 28 C 1.46499 * 124.93621 * 180.02562 * 27 26 5 29 29 H 1.08998 * 109.46927 * 270.32390 * 1 2 3 30 30 H 1.08995 * 109.47072 * 30.32811 * 1 2 3 31 31 H 1.08993 * 109.47112 * 150.32643 * 1 2 3 32 32 H 1.09005 * 110.40726 * 21.63469 * 9 8 6 33 33 H 1.09000 * 110.51305 * 259.24868 * 9 8 6 34 34 H 1.08994 * 109.47145 * 175.53653 * 12 10 9 35 35 H 1.08995 * 109.47471 * 295.53933 * 12 10 9 36 36 H 1.09000 * 109.46922 * 55.54254 * 12 10 9 37 37 H 1.09009 * 109.46730 * 64.99643 * 15 13 10 38 38 H 1.08998 * 109.46846 * 305.00188 * 15 13 10 39 39 H 0.97001 * 119.99790 * 359.97438 * 16 15 13 40 40 H 0.96998 * 119.99409 * 179.97438 * 20 19 17 41 41 H 1.09009 * 110.40416 * 100.80630 * 25 8 6 42 42 H 1.09000 * 110.40871 * 338.37846 * 25 8 6 43 43 H 1.08999 * 109.46849 * 90.02803 * 28 27 26 44 44 H 1.08996 * 109.47062 * 210.02154 * 28 27 26 45 45 H 1.08993 * 109.47068 * 330.03099 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0899 0.0000 4 17 1.8235 2.7559 -0.0006 5 6 3.6337 0.5847 -0.0033 6 6 4.8774 1.3809 -0.0080 7 8 4.8216 2.5953 -0.0144 8 7 6.0742 0.7612 -0.0049 9 6 6.3434 -0.6955 0.0034 10 6 7.5458 -0.8750 -0.9482 11 1 8.2165 -1.6466 -0.5700 12 6 7.0621 -1.2321 -2.3551 13 6 8.2552 0.4950 -0.9564 14 1 9.2748 0.3961 -0.5841 15 6 8.2606 1.0827 -2.3691 16 7 9.0402 2.3230 -2.3791 17 6 9.1811 3.0338 -3.5410 18 1 8.7212 2.6776 -4.4510 19 6 9.9150 4.2120 -3.5493 20 7 10.4758 4.6458 -2.4403 21 14 10.1078 5.1812 -5.1344 22 1 8.7691 5.5889 -5.6313 23 1 10.9306 6.3905 -4.8783 24 1 10.7775 4.3343 -6.1541 25 6 7.4192 1.3824 -0.0092 26 7 3.5456 -0.7306 0.0041 27 7 2.3126 -1.0913 0.0062 28 6 1.8446 -2.4795 0.0146 29 1 -0.3633 0.0058 1.0276 30 1 -0.3633 0.8870 -0.5189 31 1 -0.3633 -0.8928 -0.5087 32 1 5.4784 -1.2440 -0.3697 33 1 6.6005 -1.0307 1.0082 34 1 7.9152 -1.2776 -3.0319 35 1 6.5638 -2.2012 -2.3329 36 1 6.3627 -0.4718 -2.7027 37 1 7.2370 1.2944 -2.6784 38 1 8.7078 0.3668 -3.0586 39 1 9.4529 2.6430 -1.5616 40 1 10.9889 5.4689 -2.4462 41 1 7.8450 1.3737 0.9943 42 1 7.3658 2.4018 -0.3915 43 1 1.7280 -2.8173 1.0444 44 1 0.8854 -2.5426 -0.4993 45 1 2.5721 -3.1112 -0.4948 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279161165.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:04 Heat of formation + Delta-G solvation = 63.770086 kcal Electronic energy + Delta-G solvation = -27989.599087 eV Core-core repulsion = 24070.737833 eV Total energy + Delta-G solvation = -3918.861253 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.98280 -39.79973 -37.71977 -36.53655 -34.49942 -33.87540 -32.85155 -32.54298 -31.04689 -29.21853 -27.87740 -27.33261 -26.51727 -25.01081 -23.63546 -22.42105 -21.66378 -20.96569 -19.14682 -18.81228 -17.29795 -16.99473 -16.88016 -16.52675 -15.99986 -15.30160 -14.96764 -14.66198 -14.15074 -13.98064 -13.72981 -13.63252 -13.49319 -13.42334 -13.26260 -13.00637 -12.75687 -12.68511 -12.58638 -12.10942 -11.95284 -11.92347 -11.78402 -11.43899 -11.16286 -10.87997 -10.75402 -10.70480 -10.43258 -10.27144 -10.10761 -9.82714 -9.75164 -9.55902 -9.39960 -8.89128 -8.74362 -8.40105 -6.79538 -5.65409 -2.93243 1.34030 1.66377 1.72262 2.48007 3.12626 3.47648 3.52349 3.56364 3.57664 4.03639 4.16713 4.45216 4.52749 4.60123 4.68147 4.78955 4.85213 4.91354 5.05155 5.10551 5.13924 5.31231 5.39994 5.50713 5.56963 5.66047 5.69342 5.71985 5.79588 5.98899 6.00307 6.14635 6.18308 6.22441 6.28511 6.41348 6.47024 6.60869 6.65909 6.88025 7.03296 7.49814 7.79413 7.80047 8.38832 8.53770 9.64569 10.22834 10.57389 11.57647 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013590 B = 0.003176 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.864255 B = 8813.973397 C = 9970.277318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.023 3.977 3 C -0.104 4.104 4 Cl -0.006 7.006 5 C 0.015 3.985 6 C 0.614 3.386 7 O -0.511 6.511 8 N -0.605 5.605 9 C 0.099 3.901 10 C -0.099 4.099 11 H 0.082 0.918 12 C -0.143 4.143 13 C -0.106 4.106 14 H 0.087 0.913 15 C 0.162 3.838 16 N -0.732 5.732 17 C -0.236 4.236 18 H 0.068 0.932 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.287 1.287 25 C 0.112 3.888 26 N -0.246 5.246 27 N -0.282 5.282 28 C 0.088 3.912 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.059 0.941 37 H 0.020 0.980 38 H 0.024 0.976 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.067 0.933 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.369 -19.591 8.783 30.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 C -0.141 4.141 4 Cl 0.022 6.978 5 C -0.146 4.146 6 C 0.399 3.601 7 O -0.383 6.383 8 N -0.339 5.339 9 C -0.025 4.025 10 C -0.119 4.119 11 H 0.100 0.900 12 C -0.200 4.200 13 C -0.126 4.126 14 H 0.105 0.895 15 C 0.035 3.965 16 N -0.377 5.377 17 C -0.367 4.367 18 H 0.086 0.914 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.214 1.214 25 C -0.010 4.010 26 N -0.081 5.081 27 N -0.071 5.071 28 C -0.052 4.052 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.038 0.962 38 H 0.041 0.959 39 H 0.216 0.784 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.118 0.882 43 H 0.106 0.894 44 H 0.115 0.885 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.946 -19.759 8.615 30.057 hybrid contribution -0.174 1.348 -0.574 1.476 sum -21.121 -18.411 8.041 29.149 Atomic orbital electron populations 1.20395 0.85861 1.04288 1.03700 1.21079 0.95365 0.85776 1.07968 1.20526 0.92016 0.87911 1.13649 1.98367 1.90760 1.11591 1.97064 1.21858 0.94150 0.89307 1.09280 1.16298 0.80259 0.85985 0.77537 1.90890 1.85602 1.12143 1.49693 1.48656 1.05137 1.08258 1.71804 1.22724 0.99075 0.81495 0.99161 1.22088 0.96227 0.97399 0.96153 0.89984 1.21876 1.01648 1.00418 0.96079 1.22364 0.98907 0.93554 0.97740 0.89500 1.20801 0.94857 0.88725 0.92098 1.42395 1.61274 1.23766 1.10220 1.19153 1.26415 1.02543 0.88636 0.91425 1.24713 1.00870 0.98344 0.97038 1.69648 1.39124 1.23807 1.25674 0.86282 0.77511 0.79508 0.82993 1.21300 1.21724 1.21389 1.22505 0.79872 0.99713 0.98927 1.73663 1.01250 1.13771 1.19459 1.45352 1.02804 1.07308 1.51633 1.22210 1.01844 0.76521 1.04670 0.89860 0.89213 0.90688 0.88215 0.91643 0.91687 0.93457 0.92242 0.96195 0.95869 0.78365 0.93550 0.91456 0.88217 0.89421 0.88508 0.88113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 9.99 36.00 0.36 -0.10 16 2 C 0.02 0.23 6.94 -81.90 -0.57 -0.34 16 3 C -0.10 -1.43 6.79 -39.31 -0.27 -1.70 16 4 Cl -0.01 -0.09 27.93 -51.86 -1.45 -1.54 16 5 C 0.02 0.23 7.00 -82.76 -0.58 -0.34 16 6 C 0.61 11.31 7.92 -12.41 -0.10 11.21 16 7 O -0.51 -11.20 16.14 5.30 0.09 -11.12 16 8 N -0.60 -10.04 3.32 -170.48 -0.57 -10.61 16 9 C 0.10 1.28 6.23 -2.41 -0.02 1.26 16 10 C -0.10 -1.29 3.66 -89.22 -0.33 -1.62 16 11 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 12 C -0.14 -1.88 7.92 37.16 0.29 -1.58 16 13 C -0.11 -1.77 3.10 -89.22 -0.28 -2.04 16 14 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 15 C 0.16 3.42 4.39 -4.04 -0.02 3.40 16 16 N -0.73 -19.34 5.21 -59.90 -0.31 -19.65 16 17 C -0.24 -6.93 9.99 -15.06 -0.15 -7.09 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -29.29 13.06 55.49 0.72 -28.57 16 21 Si 0.91 23.44 29.55 -169.99 -5.02 18.42 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 C 0.11 1.97 6.47 -2.41 -0.02 1.96 16 26 N -0.25 -3.07 9.04 33.42 0.30 -2.76 16 27 N -0.28 -2.60 3.72 -63.69 -0.24 -2.83 16 28 C 0.09 0.32 11.12 59.85 0.67 0.98 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.52 8.04 -51.93 -0.42 0.10 16 31 H 0.07 0.22 7.03 -51.93 -0.36 -0.15 16 32 H 0.10 1.23 5.24 -51.93 -0.27 0.96 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.88 6.67 -51.93 -0.35 0.53 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.91 6.94 -51.93 -0.36 0.55 16 37 H 0.02 0.46 7.09 -51.92 -0.37 0.09 16 38 H 0.02 0.49 6.49 -51.93 -0.34 0.15 16 39 H 0.38 10.52 7.61 -40.82 -0.31 10.21 16 40 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 41 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 42 H 0.10 2.18 7.31 -51.93 -0.38 1.80 16 43 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 44 H 0.10 0.11 6.98 -51.93 -0.36 -0.25 16 45 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -37.08 376.97 -8.33 -45.42 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.45 Total: 4.07 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -1.09 Total: 3.49 kcal Atomic # 7 Polarization: -64.34 SS G_CDS: -0.09 Total: -64.43 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -5.02 Total: 18.42 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.45 Total: -1.54 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.08 -8.33 -45.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279161165.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.186 kcal (2) G-P(sol) polarization free energy of solvation -37.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds