Wall clock time and date at job start Sat Apr 11 2020 06:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35464 * 126.43267 * 2 1 4 4 Cl 1.73605 * 127.24145 * 359.97438 * 3 2 1 5 5 C 1.41548 * 105.52223 * 180.14009 * 3 2 1 6 6 C 1.47670 * 126.46267 * 179.83795 * 5 3 2 7 7 O 1.21576 * 119.99692 * 359.71944 * 6 5 3 8 8 N 1.34774 * 119.99880 * 179.71181 * 6 5 3 9 9 C 1.48140 * 127.84215 * 359.97438 * 8 6 5 10 10 C 1.54390 * 104.61751 * 140.41099 * 9 8 6 11 11 H 1.09004 * 110.34241 * 142.74048 * 10 9 8 12 12 C 1.52997 * 110.34521 * 264.99622 * 10 9 8 13 13 C 1.54283 * 104.96027 * 23.87293 * 10 9 8 14 14 H 1.08994 * 110.34422 * 118.97437 * 13 10 9 15 15 C 1.53004 * 110.34241 * 241.12630 * 13 10 9 16 16 N 1.46499 * 109.47198 * 184.99856 * 15 13 10 17 17 C 1.36939 * 119.99933 * 180.27608 * 16 15 13 18 18 H 1.08001 * 119.99700 * 359.72658 * 17 16 15 19 19 C 1.38810 * 120.00095 * 179.71972 * 17 16 15 20 20 N 1.31624 * 119.99740 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47173 * 60.00435 * 21 19 17 23 23 H 1.48497 * 109.47172 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47132 * 300.00314 * 21 19 17 25 25 C 1.48150 * 127.83470 * 179.97438 * 8 6 5 26 26 N 1.31826 * 107.07836 * 359.58226 * 5 3 2 27 27 N 1.28470 * 110.13593 * 0.26051 * 26 5 3 28 28 C 1.46499 * 124.93621 * 180.02562 * 27 26 5 29 29 H 1.08998 * 109.46927 * 270.32390 * 1 2 3 30 30 H 1.08995 * 109.47072 * 30.32811 * 1 2 3 31 31 H 1.08993 * 109.47112 * 150.32643 * 1 2 3 32 32 H 1.09005 * 110.40726 * 21.63469 * 9 8 6 33 33 H 1.09000 * 110.51305 * 259.24868 * 9 8 6 34 34 H 1.08994 * 109.47145 * 175.53653 * 12 10 9 35 35 H 1.08995 * 109.47471 * 295.53933 * 12 10 9 36 36 H 1.09000 * 109.46922 * 55.54254 * 12 10 9 37 37 H 1.09009 * 109.46730 * 64.99643 * 15 13 10 38 38 H 1.08998 * 109.46846 * 305.00188 * 15 13 10 39 39 H 0.97001 * 119.99790 * 359.97438 * 16 15 13 40 40 H 0.96998 * 119.99409 * 179.97438 * 20 19 17 41 41 H 1.09009 * 110.40416 * 100.80630 * 25 8 6 42 42 H 1.09000 * 110.40871 * 338.37846 * 25 8 6 43 43 H 1.08999 * 109.46849 * 90.02803 * 28 27 26 44 44 H 1.08996 * 109.47062 * 210.02154 * 28 27 26 45 45 H 1.08993 * 109.47068 * 330.03099 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0899 0.0000 4 17 1.8235 2.7559 -0.0006 5 6 3.6337 0.5847 -0.0033 6 6 4.8774 1.3809 -0.0080 7 8 4.8216 2.5953 -0.0144 8 7 6.0742 0.7612 -0.0049 9 6 6.3434 -0.6955 0.0034 10 6 7.5458 -0.8750 -0.9482 11 1 8.2165 -1.6466 -0.5700 12 6 7.0621 -1.2321 -2.3551 13 6 8.2552 0.4950 -0.9564 14 1 9.2748 0.3961 -0.5841 15 6 8.2606 1.0827 -2.3691 16 7 9.0402 2.3230 -2.3791 17 6 9.1811 3.0338 -3.5410 18 1 8.7212 2.6776 -4.4510 19 6 9.9150 4.2120 -3.5493 20 7 10.4758 4.6458 -2.4403 21 14 10.1078 5.1812 -5.1344 22 1 8.7691 5.5889 -5.6313 23 1 10.9306 6.3905 -4.8783 24 1 10.7775 4.3343 -6.1541 25 6 7.4192 1.3824 -0.0092 26 7 3.5456 -0.7306 0.0041 27 7 2.3126 -1.0913 0.0062 28 6 1.8446 -2.4795 0.0146 29 1 -0.3633 0.0058 1.0276 30 1 -0.3633 0.8870 -0.5189 31 1 -0.3633 -0.8928 -0.5087 32 1 5.4784 -1.2440 -0.3697 33 1 6.6005 -1.0307 1.0082 34 1 7.9152 -1.2776 -3.0319 35 1 6.5638 -2.2012 -2.3329 36 1 6.3627 -0.4718 -2.7027 37 1 7.2370 1.2944 -2.6784 38 1 8.7078 0.3668 -3.0586 39 1 9.4529 2.6430 -1.5616 40 1 10.9889 5.4689 -2.4462 41 1 7.8450 1.3737 0.9943 42 1 7.3658 2.4018 -0.3915 43 1 1.7280 -2.8173 1.0444 44 1 0.8854 -2.5426 -0.4993 45 1 2.5721 -3.1112 -0.4948 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279161165.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:03 Heat of formation + Delta-G solvation = 37.659007 kcal Electronic energy + Delta-G solvation = -27990.731348 eV Core-core repulsion = 24070.737833 eV Total energy + Delta-G solvation = -3919.993515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.84046 -41.11306 -39.11840 -37.55003 -36.39475 -34.77230 -34.03377 -33.50298 -32.84673 -30.72813 -28.79342 -28.18436 -27.52989 -26.63116 -25.09636 -24.00523 -22.86971 -21.85390 -20.35487 -20.19430 -19.08821 -18.02263 -17.82391 -17.68651 -17.22397 -16.73883 -16.45753 -15.77630 -15.55515 -15.43713 -15.27012 -14.69396 -14.62367 -14.28818 -14.16199 -14.05048 -13.72277 -13.65633 -13.53621 -13.28785 -13.16512 -13.02427 -12.86231 -12.83184 -12.76764 -12.76540 -12.27299 -12.21316 -11.91292 -11.80422 -11.65058 -11.45004 -11.27994 -11.06864 -10.89397 -10.25379 -9.83301 -9.66566 -8.99344 -7.96222 -5.24617 0.33725 0.74891 0.92721 1.42857 1.47634 1.53300 1.59523 1.97711 2.19939 2.54442 3.17589 3.36309 3.49731 3.56726 3.59938 3.78875 3.84914 4.07589 4.18255 4.32063 4.33248 4.37348 4.40279 4.56390 4.62243 4.63507 4.66669 4.73471 4.77608 4.82000 4.85035 4.89093 4.94094 4.96933 5.06624 5.14879 5.20788 5.27205 5.37583 5.46261 5.58179 5.71019 6.26425 6.46496 6.63786 7.06110 7.32090 8.08728 8.32155 9.27274 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013590 B = 0.003176 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.864255 B = 8813.973397 C = 9970.277318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.045 3.955 3 C -0.140 4.140 4 Cl -0.026 7.026 5 C -0.022 4.022 6 C 0.602 3.398 7 O -0.566 6.566 8 N -0.607 5.607 9 C 0.101 3.899 10 C -0.088 4.088 11 H 0.121 0.879 12 C -0.140 4.140 13 C -0.099 4.099 14 H 0.097 0.903 15 C 0.168 3.832 16 N -0.744 5.744 17 C -0.248 4.248 18 H 0.069 0.931 19 C -0.075 4.075 20 N -0.968 5.968 21 Si 0.973 3.027 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.272 1.272 25 C 0.112 3.888 26 N -0.242 5.242 27 N -0.267 5.267 28 C 0.071 3.929 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.027 0.973 37 H -0.003 1.003 38 H 0.033 0.967 39 H 0.374 0.626 40 H 0.252 0.748 41 H 0.087 0.913 42 H 0.046 0.954 43 H 0.110 0.890 44 H 0.130 0.870 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.065 -23.655 8.764 34.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 C -0.177 4.177 4 Cl 0.002 6.998 5 C -0.181 4.181 6 C 0.390 3.610 7 O -0.444 6.444 8 N -0.339 5.339 9 C -0.020 4.020 10 C -0.107 4.107 11 H 0.139 0.861 12 C -0.197 4.197 13 C -0.118 4.118 14 H 0.115 0.885 15 C 0.042 3.958 16 N -0.387 5.387 17 C -0.380 4.380 18 H 0.087 0.913 19 C -0.267 4.267 20 N -0.618 5.618 21 Si 0.802 3.198 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.198 1.198 25 C -0.010 4.010 26 N -0.079 5.079 27 N -0.056 5.056 28 C -0.066 4.066 29 H 0.120 0.880 30 H 0.103 0.897 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.047 0.953 37 H 0.015 0.985 38 H 0.051 0.949 39 H 0.206 0.794 40 H 0.060 0.940 41 H 0.105 0.895 42 H 0.065 0.935 43 H 0.129 0.871 44 H 0.148 0.852 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -22.652 -23.917 8.584 34.041 hybrid contribution 0.236 2.445 -0.555 2.518 sum -22.416 -21.472 8.028 32.062 Atomic orbital electron populations 1.20627 0.82419 1.05865 1.05330 1.21639 0.97072 0.84573 1.04865 1.20808 0.92405 0.88107 1.16387 1.98344 1.90733 1.13409 1.97297 1.21445 0.93306 0.90507 1.12794 1.16866 0.81614 0.85849 0.76654 1.90834 1.86611 1.14559 1.52368 1.48780 1.04238 1.09924 1.70961 1.22955 0.99369 0.79101 1.00607 1.22143 0.96410 0.95728 0.96429 0.86082 1.21841 1.00955 1.01134 0.95798 1.22286 0.99787 0.95359 0.94376 0.88496 1.20877 0.92552 0.86991 0.95404 1.42608 1.61708 1.25311 1.09076 1.19551 1.25800 1.03030 0.89626 0.91256 1.25573 1.01145 0.99548 1.00449 1.69811 1.40120 1.24138 1.27771 0.85220 0.77389 0.77937 0.79282 1.21021 1.21746 1.19805 1.22375 0.81343 0.97367 0.99939 1.73543 1.03076 1.12035 1.19222 1.45981 1.01723 1.09174 1.48738 1.22822 1.03570 0.73327 1.06880 0.87994 0.89689 0.87081 0.87218 0.89096 0.92237 0.90164 0.95343 0.98537 0.94908 0.79439 0.93952 0.89457 0.93507 0.87145 0.85212 0.87115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 9.99 71.23 0.71 0.08 16 2 C 0.04 0.78 6.94 41.33 0.29 1.07 16 3 C -0.14 -3.88 6.79 22.44 0.15 -3.73 16 4 Cl -0.03 -0.79 27.93 -2.72 -0.08 -0.87 16 5 C -0.02 -0.68 7.00 42.45 0.30 -0.38 16 6 C 0.60 23.52 7.92 86.74 0.69 24.21 16 7 O -0.57 -27.14 16.14 -3.95 -0.06 -27.20 16 8 N -0.61 -20.67 3.32 -811.53 -2.69 -23.36 16 9 C 0.10 2.41 6.23 86.54 0.54 2.95 16 10 C -0.09 -2.07 3.66 -9.89 -0.04 -2.11 16 11 H 0.12 2.05 8.14 -2.39 -0.02 2.04 16 12 C -0.14 -3.41 7.92 71.98 0.57 -2.84 16 13 C -0.10 -3.27 3.10 -9.89 -0.03 -3.30 16 14 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 15 C 0.17 7.29 4.39 86.38 0.38 7.67 16 16 N -0.74 -40.92 5.21 -343.44 -1.79 -42.71 16 17 C -0.25 -15.00 9.99 84.03 0.84 -14.16 16 18 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 19 C -0.07 -4.59 5.50 84.86 0.47 -4.12 16 20 N -0.97 -62.59 13.06 21.65 0.28 -62.31 16 21 Si 0.97 49.15 29.55 68.60 2.03 51.18 16 22 H -0.28 -14.09 7.11 99.48 0.71 -13.39 16 23 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 24 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 25 C 0.11 4.15 6.47 86.53 0.56 4.71 16 26 N -0.24 -5.60 9.04 -48.17 -0.44 -6.03 16 27 N -0.27 -4.08 3.72 -355.40 -1.32 -5.40 16 28 C 0.07 0.17 11.12 127.77 1.42 1.59 16 29 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.08 0.79 8.04 -2.39 -0.02 0.77 16 31 H 0.11 0.05 7.03 -2.39 -0.02 0.03 16 32 H 0.11 2.44 5.24 -2.38 -0.01 2.42 16 33 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.06 1.51 6.67 -2.39 -0.02 1.49 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.03 0.86 6.94 -2.39 -0.02 0.84 16 37 H 0.00 -0.16 7.09 -2.38 -0.02 -0.17 16 38 H 0.03 1.38 6.49 -2.39 -0.02 1.37 16 39 H 0.37 21.56 7.61 -92.71 -0.71 20.86 16 40 H 0.25 15.74 8.31 -92.71 -0.77 14.97 16 41 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16 42 H 0.05 2.23 7.31 -2.39 -0.02 2.21 16 43 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 44 H 0.13 -0.49 6.98 -2.39 -0.02 -0.50 16 45 H 0.11 0.13 8.14 -2.39 -0.02 0.12 16 Total: -1.00 -88.00 376.97 3.10 -84.90 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.32 Total: 20.17 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 6.84 Total: 11.63 kcal Atomic # 7 Polarization: -133.86 SS G_CDS: -5.95 Total: -139.81 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.06 Total: -27.20 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 2.03 Total: 51.18 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.87 kcal Total: -88.00 3.10 -84.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279161165.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.560 kcal (2) G-P(sol) polarization free energy of solvation -87.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds