Wall clock time and date at job start Sat Apr 11 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30850 * 125.89433 * 2 1 4 4 N 1.40084 * 108.22815 * 179.76993 * 3 2 1 5 5 C 1.46491 * 126.04079 * 180.30866 * 4 3 2 6 6 C 1.50705 * 109.47035 * 270.13474 * 5 4 3 7 7 O 1.21278 * 119.99656 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00118 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00233 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46866 * 324.99966 * 9 8 6 11 11 C 1.52997 * 109.47482 * 85.00071 * 9 8 6 12 12 C 1.52996 * 109.47193 * 205.00438 * 9 8 6 13 13 C 1.53953 * 113.74356 * 161.67803 * 12 9 8 14 14 N 1.47579 * 86.11715 * 222.04507 * 13 12 9 15 15 C 1.36933 * 134.49493 * 204.63662 * 14 13 12 16 16 H 1.07998 * 120.00670 * 180.02562 * 15 14 13 17 17 C 1.38817 * 119.99867 * 0.02562 * 15 14 13 18 18 N 1.31621 * 119.99611 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00193 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47219 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47400 * 120.00142 * 19 17 15 22 22 H 1.48506 * 109.47266 * 239.99968 * 19 17 15 23 23 C 1.47585 * 91.01425 * 24.64182 * 14 13 12 24 24 C 1.35051 * 107.92041 * 0.41993 * 4 3 2 25 25 C 1.50699 * 126.13389 * 179.84243 * 24 4 3 26 26 C 1.35371 * 107.72789 * 359.58851 * 24 4 3 27 27 Cl 1.73603 * 126.04281 * 180.29266 * 26 24 4 28 28 H 1.09003 * 109.47063 * 269.96733 * 1 2 3 29 29 H 1.09002 * 109.47164 * 29.97236 * 1 2 3 30 30 H 1.09001 * 109.46837 * 149.97274 * 1 2 3 31 31 H 1.09008 * 109.47076 * 30.13353 * 5 4 3 32 32 H 1.09000 * 109.47408 * 150.13307 * 5 4 3 33 33 H 0.97007 * 119.99977 * 0.02562 * 8 6 5 34 34 H 1.08998 * 109.46895 * 60.02896 * 11 9 8 35 35 H 1.08991 * 109.47249 * 180.02562 * 11 9 8 36 36 H 1.08997 * 109.47109 * 300.03657 * 11 9 8 37 37 H 1.08997 * 112.94354 * 293.40970 * 12 9 8 38 38 H 1.08996 * 113.76731 * 336.34821 * 13 12 9 39 39 H 1.09002 * 113.76835 * 107.74264 * 13 12 9 40 40 H 0.97003 * 119.99975 * 180.02562 * 18 17 15 41 41 H 1.09009 * 113.76503 * 221.05798 * 23 14 13 42 42 H 1.08990 * 113.87645 * 89.67626 * 23 14 13 43 43 H 1.08998 * 109.47606 * 269.72357 * 25 24 4 44 44 H 1.09001 * 109.46849 * 149.71644 * 25 24 4 45 45 H 1.09004 * 109.46737 * 29.72715 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0600 0.0000 4 7 3.6089 0.6349 0.0053 5 6 4.7896 1.5020 0.0135 6 6 5.1995 1.8060 -1.4045 7 8 4.5672 1.3441 -2.3306 8 7 6.2680 2.5919 -1.6434 9 6 6.6660 2.8878 -3.0218 10 1 6.4752 2.0176 -3.6499 11 6 5.8583 4.0788 -3.5415 12 6 8.1574 3.2273 -3.0603 13 6 8.7818 3.1188 -4.4633 14 7 9.9303 2.4788 -3.7930 15 6 11.2594 2.3384 -4.0913 16 1 11.9120 1.8084 -3.4134 17 6 11.7680 2.8775 -5.2651 18 7 10.9727 3.5240 -6.0909 19 14 13.5811 2.6867 -5.6717 20 1 14.2538 1.9252 -4.5888 21 1 13.7261 1.9539 -6.9551 22 1 14.2047 4.0288 -5.7948 23 6 9.0711 2.0508 -2.6720 24 6 3.6150 -0.7156 -0.0009 25 6 4.8360 -1.5988 -0.0016 26 6 2.3274 -1.1335 -0.0006 27 17 1.7892 -2.7840 -0.0001 28 1 -0.3633 -0.0006 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5143 31 1 4.5538 2.4321 0.5309 32 1 5.6075 0.9974 0.5279 33 1 6.7735 2.9616 -0.9026 34 1 6.0495 4.9491 -2.9137 35 1 6.1542 4.2987 -4.5672 36 1 4.7959 3.8371 -3.5136 37 1 8.3950 4.1568 -2.5430 38 1 8.2392 2.4542 -5.1355 39 1 9.0178 4.0824 -4.9149 40 1 11.3280 3.9004 -6.9113 41 1 9.5382 2.1616 -1.6933 42 1 8.6128 1.0724 -2.8161 43 1 5.1304 -1.8110 -1.0294 44 1 4.6089 -2.5331 0.5117 45 1 5.6520 -1.0909 0.5126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282744311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:37 Heat of formation + Delta-G solvation = 83.257672 kcal Electronic energy + Delta-G solvation = -27040.324994 eV Core-core repulsion = 23122.308785 eV Total energy + Delta-G solvation = -3918.016208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.70955 -39.86163 -38.14090 -36.58718 -34.98279 -34.37763 -32.42258 -32.11336 -30.93184 -29.70056 -27.54026 -27.26406 -26.34026 -24.80368 -24.02709 -21.77472 -20.80714 -20.56916 -19.89788 -19.16736 -17.47151 -17.28408 -16.79868 -16.00791 -15.57060 -15.40414 -14.84271 -14.74990 -14.24683 -14.15064 -13.98144 -13.64700 -13.54555 -13.48253 -13.28815 -12.76389 -12.70739 -12.55590 -12.35496 -12.24126 -12.06127 -11.97391 -11.67050 -11.47300 -11.43375 -11.28801 -10.94134 -10.74089 -10.63826 -10.40351 -10.26772 -9.88307 -9.85943 -9.50538 -9.30809 -9.00267 -8.84403 -8.51485 -6.92831 -5.81449 -3.13981 1.39344 1.70015 2.32828 2.42676 2.51290 3.12799 3.35595 3.40753 3.43535 4.15594 4.22142 4.40580 4.46608 4.57923 4.60126 4.78472 5.01026 5.05262 5.10546 5.22103 5.33185 5.35138 5.39464 5.48128 5.53877 5.57227 5.60829 5.74358 5.75013 5.91537 5.99890 6.18251 6.20409 6.27593 6.37228 6.47128 6.52577 6.55451 6.71230 7.17238 7.29974 7.35814 7.42118 7.51670 7.93762 8.09535 9.00193 9.66370 10.54743 11.35753 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021586 B = 0.002144 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.802053 B =13057.073954 C =13778.601558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.093 3.907 3 N -0.274 5.274 4 N -0.347 5.347 5 C 0.114 3.886 6 C 0.494 3.506 7 O -0.521 6.521 8 N -0.714 5.714 9 C 0.152 3.848 10 H 0.087 0.913 11 C -0.158 4.158 12 C -0.147 4.147 13 C 0.176 3.824 14 N -0.612 5.612 15 C -0.224 4.224 16 H 0.080 0.920 17 C -0.008 4.008 18 N -0.921 5.921 19 Si 0.912 3.088 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.125 3.875 24 C 0.119 3.881 25 C -0.099 4.099 26 C -0.189 4.189 27 Cl -0.045 7.045 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.400 0.600 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.090 0.910 38 H 0.028 0.972 39 H 0.075 0.925 40 H 0.254 0.746 41 H 0.040 0.960 42 H 0.031 0.969 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.870 -5.874 16.717 25.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.074 4.074 3 N -0.096 5.096 4 N -0.128 5.128 5 C -0.012 4.012 6 C 0.277 3.723 7 O -0.396 6.396 8 N -0.365 5.365 9 C 0.048 3.952 10 H 0.105 0.895 11 C -0.216 4.216 12 C -0.167 4.167 13 C 0.050 3.950 14 N -0.338 5.338 15 C -0.352 4.352 16 H 0.098 0.902 17 C -0.205 4.205 18 N -0.568 5.568 19 Si 0.742 3.258 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.217 1.217 23 C -0.001 4.001 24 C -0.009 4.009 25 C -0.157 4.157 26 C -0.227 4.227 27 Cl -0.016 7.016 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.234 0.766 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.045 0.955 39 H 0.094 0.906 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.899 -4.939 15.835 24.403 hybrid contribution 1.288 -0.925 -0.079 1.588 sum -16.610 -5.864 15.756 23.633 Atomic orbital electron populations 1.20224 0.85983 1.03807 1.03238 1.22231 0.97288 0.88895 0.99001 1.77445 0.85680 1.21542 1.24918 1.47558 1.04961 1.03287 1.57038 1.21569 0.85748 0.97073 0.96803 1.20641 0.81261 0.79539 0.90879 1.90785 1.52595 1.51232 1.45034 1.46076 1.29876 1.50500 1.10056 1.21152 0.94356 0.98505 0.81197 0.89464 1.22104 0.99825 0.97685 1.02028 1.23878 0.90168 0.99727 1.02943 1.22193 0.84933 0.98160 0.89758 1.45943 1.03277 1.63547 1.20994 1.19056 0.82043 1.30334 1.03722 0.90234 1.24798 0.98136 1.00699 0.96855 1.69817 1.33753 1.40749 1.12452 0.86049 0.84378 0.77353 0.77983 1.20470 1.21710 1.21658 1.22531 0.90343 0.94435 0.92772 1.20682 0.96304 0.84722 0.99225 1.20575 0.92430 0.98227 1.04445 1.20236 0.92025 0.86874 1.23611 1.98301 1.89768 1.15727 1.97848 0.90176 0.90435 0.90092 0.85447 0.85731 0.76597 0.92655 0.90977 0.92865 0.89215 0.95471 0.90638 0.93620 0.94134 0.95135 0.89134 0.89124 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.31 36.01 0.37 -0.26 16 2 C 0.09 1.12 7.22 -82.38 -0.59 0.53 16 3 N -0.27 -3.69 12.57 33.68 0.42 -3.26 16 4 N -0.35 -4.11 3.10 -58.28 -0.18 -4.29 16 5 C 0.11 0.99 6.73 -5.20 -0.03 0.95 16 6 C 0.49 6.06 7.86 -10.98 -0.09 5.97 16 7 O -0.52 -8.99 16.09 5.56 0.09 -8.90 16 8 N -0.71 -7.93 4.94 -53.81 -0.27 -8.19 16 9 C 0.15 2.19 2.29 -67.94 -0.16 2.04 16 10 H 0.09 1.50 7.48 -51.93 -0.39 1.11 16 11 C -0.16 -2.16 9.44 37.16 0.35 -1.81 16 12 C -0.15 -2.47 3.36 -89.69 -0.30 -2.77 16 13 C 0.18 3.95 6.98 -2.97 -0.02 3.93 16 14 N -0.61 -15.25 3.70 -177.89 -0.66 -15.90 16 15 C -0.22 -6.19 10.70 -15.06 -0.16 -6.35 16 16 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 17 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 18 N -0.92 -27.00 11.38 55.49 0.63 -26.37 16 19 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 C 0.13 2.38 8.37 -2.97 -0.02 2.35 16 24 C 0.12 1.35 6.94 -82.20 -0.57 0.78 16 25 C -0.10 -0.82 9.95 36.00 0.36 -0.46 16 26 C -0.19 -2.23 6.63 -39.97 -0.27 -2.49 16 27 Cl -0.04 -0.45 28.58 -51.86 -1.48 -1.93 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.61 8.01 -51.93 -0.42 0.20 16 31 H 0.13 0.82 8.14 -51.92 -0.42 0.40 16 32 H 0.12 0.64 7.05 -51.93 -0.37 0.28 16 33 H 0.40 3.21 8.60 -40.82 -0.35 2.85 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.03 0.64 8.03 -51.93 -0.42 0.22 16 39 H 0.08 1.88 7.15 -51.93 -0.37 1.51 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.04 0.71 8.14 -51.92 -0.42 0.28 16 42 H 0.03 0.59 8.10 -51.93 -0.42 0.17 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 0.64 7.91 -51.93 -0.41 0.23 16 45 H 0.07 0.47 7.08 -51.93 -0.37 0.10 16 LS Contribution 392.30 15.07 5.91 5.91 Total: -1.00 -35.73 392.30 -8.64 -44.37 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -6.86 Total: -0.40 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -1.23 Total: 2.09 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.05 Total: -58.02 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.48 Total: -1.93 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.73 -8.64 -44.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282744311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.632 kcal (2) G-P(sol) polarization free energy of solvation -35.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds