Wall clock time and date at job start Sat Apr 11 2020 05:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30850 * 125.89433 * 2 1 4 4 N 1.40084 * 108.22815 * 179.76993 * 3 2 1 5 5 C 1.46491 * 126.04079 * 180.30866 * 4 3 2 6 6 C 1.50705 * 109.47035 * 270.13474 * 5 4 3 7 7 O 1.21278 * 119.99656 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00118 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00233 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46866 * 324.99966 * 9 8 6 11 11 C 1.52997 * 109.47482 * 85.00071 * 9 8 6 12 12 C 1.52996 * 109.47193 * 205.00438 * 9 8 6 13 13 C 1.53953 * 113.74356 * 161.67803 * 12 9 8 14 14 N 1.47579 * 86.11715 * 222.04507 * 13 12 9 15 15 C 1.36933 * 134.49493 * 204.63662 * 14 13 12 16 16 H 1.07998 * 120.00670 * 180.02562 * 15 14 13 17 17 C 1.38817 * 119.99867 * 0.02562 * 15 14 13 18 18 N 1.31621 * 119.99611 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00193 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47219 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47400 * 120.00142 * 19 17 15 22 22 H 1.48506 * 109.47266 * 239.99968 * 19 17 15 23 23 C 1.47585 * 91.01425 * 24.64182 * 14 13 12 24 24 C 1.35051 * 107.92041 * 0.41993 * 4 3 2 25 25 C 1.50699 * 126.13389 * 179.84243 * 24 4 3 26 26 C 1.35371 * 107.72789 * 359.58851 * 24 4 3 27 27 Cl 1.73603 * 126.04281 * 180.29266 * 26 24 4 28 28 H 1.09003 * 109.47063 * 269.96733 * 1 2 3 29 29 H 1.09002 * 109.47164 * 29.97236 * 1 2 3 30 30 H 1.09001 * 109.46837 * 149.97274 * 1 2 3 31 31 H 1.09008 * 109.47076 * 30.13353 * 5 4 3 32 32 H 1.09000 * 109.47408 * 150.13307 * 5 4 3 33 33 H 0.97007 * 119.99977 * 0.02562 * 8 6 5 34 34 H 1.08998 * 109.46895 * 60.02896 * 11 9 8 35 35 H 1.08991 * 109.47249 * 180.02562 * 11 9 8 36 36 H 1.08997 * 109.47109 * 300.03657 * 11 9 8 37 37 H 1.08997 * 112.94354 * 293.40970 * 12 9 8 38 38 H 1.08996 * 113.76731 * 336.34821 * 13 12 9 39 39 H 1.09002 * 113.76835 * 107.74264 * 13 12 9 40 40 H 0.97003 * 119.99975 * 180.02562 * 18 17 15 41 41 H 1.09009 * 113.76503 * 221.05798 * 23 14 13 42 42 H 1.08990 * 113.87645 * 89.67626 * 23 14 13 43 43 H 1.08998 * 109.47606 * 269.72357 * 25 24 4 44 44 H 1.09001 * 109.46849 * 149.71644 * 25 24 4 45 45 H 1.09004 * 109.46737 * 29.72715 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0600 0.0000 4 7 3.6089 0.6349 0.0053 5 6 4.7896 1.5020 0.0135 6 6 5.1995 1.8060 -1.4045 7 8 4.5672 1.3441 -2.3306 8 7 6.2680 2.5919 -1.6434 9 6 6.6660 2.8878 -3.0218 10 1 6.4752 2.0176 -3.6499 11 6 5.8583 4.0788 -3.5415 12 6 8.1574 3.2273 -3.0603 13 6 8.7818 3.1188 -4.4633 14 7 9.9303 2.4788 -3.7930 15 6 11.2594 2.3384 -4.0913 16 1 11.9120 1.8084 -3.4134 17 6 11.7680 2.8775 -5.2651 18 7 10.9727 3.5240 -6.0909 19 14 13.5811 2.6867 -5.6717 20 1 14.2538 1.9252 -4.5888 21 1 13.7261 1.9539 -6.9551 22 1 14.2047 4.0288 -5.7948 23 6 9.0711 2.0508 -2.6720 24 6 3.6150 -0.7156 -0.0009 25 6 4.8360 -1.5988 -0.0016 26 6 2.3274 -1.1335 -0.0006 27 17 1.7892 -2.7840 -0.0001 28 1 -0.3633 -0.0006 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5143 31 1 4.5538 2.4321 0.5309 32 1 5.6075 0.9974 0.5279 33 1 6.7735 2.9616 -0.9026 34 1 6.0495 4.9491 -2.9137 35 1 6.1542 4.2987 -4.5672 36 1 4.7959 3.8371 -3.5136 37 1 8.3950 4.1568 -2.5430 38 1 8.2392 2.4542 -5.1355 39 1 9.0178 4.0824 -4.9149 40 1 11.3280 3.9004 -6.9113 41 1 9.5382 2.1616 -1.6933 42 1 8.6128 1.0724 -2.8161 43 1 5.1304 -1.8110 -1.0294 44 1 4.6089 -2.5331 0.5117 45 1 5.6520 -1.0909 0.5126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282744311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:36 Heat of formation + Delta-G solvation = 59.213283 kcal Electronic energy + Delta-G solvation = -27041.367637 eV Core-core repulsion = 23122.308785 eV Total energy + Delta-G solvation = -3919.058851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.52169 -40.99519 -39.63945 -37.38517 -36.26620 -35.19065 -34.17144 -33.06721 -32.06450 -30.54167 -29.34039 -28.00925 -27.22634 -26.41698 -25.65604 -23.14034 -21.77435 -21.52198 -21.02377 -20.38717 -18.80748 -18.43241 -18.09120 -17.12733 -16.85367 -16.40716 -16.32661 -15.85390 -15.57904 -15.31730 -15.00692 -14.84979 -14.69773 -14.23194 -14.20259 -14.09679 -13.58950 -13.35344 -13.32197 -13.28192 -13.14756 -13.07610 -12.98686 -12.87113 -12.78552 -12.71929 -12.37035 -12.22430 -12.00612 -11.81953 -11.61519 -11.45069 -11.23931 -11.09092 -10.88390 -10.16861 -10.11284 -9.34325 -8.92554 -7.91471 -5.24862 0.55994 0.94545 1.45215 1.46280 1.49225 1.51039 1.56314 1.70468 2.18559 2.46788 3.29368 3.39201 3.44590 3.52166 3.56824 3.79592 3.90707 3.96625 4.04244 4.16386 4.25233 4.30528 4.43435 4.56529 4.60442 4.68455 4.77090 4.77938 4.80439 4.86233 4.89557 4.94793 4.97062 5.04039 5.06790 5.24539 5.27952 5.45361 5.47437 5.54539 5.65101 5.78355 5.93986 6.51562 6.53919 6.91576 7.20032 7.60727 8.55901 9.25723 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021586 B = 0.002144 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.802053 B =13057.073954 C =13778.601558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.082 3.918 3 N -0.309 5.309 4 N -0.354 5.354 5 C 0.114 3.886 6 C 0.495 3.505 7 O -0.576 6.576 8 N -0.698 5.698 9 C 0.166 3.834 10 H 0.057 0.943 11 C -0.152 4.152 12 C -0.107 4.107 13 C 0.168 3.832 14 N -0.644 5.644 15 C -0.232 4.232 16 H 0.086 0.914 17 C -0.071 4.071 18 N -0.955 5.955 19 Si 0.978 3.022 20 H -0.263 1.263 21 H -0.296 1.296 22 H -0.291 1.291 23 C 0.129 3.871 24 C 0.113 3.887 25 C -0.098 4.098 26 C -0.210 4.210 27 Cl -0.036 7.036 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.155 0.845 32 H 0.168 0.832 33 H 0.421 0.579 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.109 0.891 38 H 0.007 0.993 39 H 0.044 0.956 40 H 0.248 0.752 41 H 0.068 0.932 42 H 0.034 0.966 43 H 0.079 0.921 44 H 0.101 0.899 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.457 -6.087 19.573 26.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.085 4.085 3 N -0.130 5.130 4 N -0.135 5.135 5 C -0.010 4.010 6 C 0.281 3.719 7 O -0.455 6.455 8 N -0.351 5.351 9 C 0.060 3.940 10 H 0.075 0.925 11 C -0.210 4.210 12 C -0.127 4.127 13 C 0.042 3.958 14 N -0.371 5.371 15 C -0.360 4.360 16 H 0.104 0.896 17 C -0.263 4.263 18 N -0.604 5.604 19 Si 0.806 3.194 20 H -0.187 1.187 21 H -0.224 1.224 22 H -0.218 1.218 23 C 0.005 3.995 24 C -0.016 4.016 25 C -0.156 4.156 26 C -0.248 4.248 27 Cl -0.008 7.008 28 H 0.116 0.884 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.173 0.827 32 H 0.185 0.815 33 H 0.258 0.742 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.127 0.873 38 H 0.025 0.975 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.086 0.914 42 H 0.051 0.949 43 H 0.098 0.902 44 H 0.120 0.880 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.482 -5.151 18.767 26.160 hybrid contribution 1.113 -0.916 -0.954 1.728 sum -16.369 -6.066 17.812 24.940 Atomic orbital electron populations 1.20330 0.84234 1.04129 1.04458 1.22754 0.98652 0.88839 0.98273 1.77364 0.86803 1.22564 1.26309 1.47812 1.05088 1.03778 1.56863 1.21893 0.86127 0.98710 0.94283 1.21276 0.80369 0.78288 0.91984 1.90776 1.54324 1.53271 1.47113 1.45790 1.29928 1.50247 1.09135 1.20695 0.92768 0.97660 0.82873 0.92458 1.22033 0.99061 0.98063 1.01871 1.23449 0.91146 0.99761 0.98327 1.22098 0.85272 0.96025 0.92437 1.46389 1.03262 1.64357 1.23064 1.19476 0.83769 1.29180 1.03617 0.89634 1.25650 1.02301 1.01215 0.97175 1.70011 1.35433 1.42236 1.12738 0.85017 0.79660 0.77086 0.77615 1.18708 1.22362 1.21764 1.22693 0.89532 0.95052 0.92245 1.21192 0.97166 0.85046 0.98201 1.20680 0.92099 0.98558 1.04233 1.20494 0.92543 0.87409 1.24355 1.98294 1.89734 1.14946 1.97863 0.88438 0.90360 0.89455 0.82746 0.81491 0.74170 0.90411 0.92154 0.93583 0.87324 0.97523 0.93720 0.94320 0.91366 0.94873 0.90202 0.88031 0.88018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.18 10.31 71.24 0.73 -0.45 16 2 C 0.08 1.92 7.22 43.11 0.31 2.23 16 3 N -0.31 -8.01 12.57 -47.34 -0.60 -8.61 16 4 N -0.35 -7.73 3.10 -338.29 -1.05 -8.78 16 5 C 0.11 1.60 6.73 85.64 0.58 2.18 16 6 C 0.50 11.12 7.86 87.66 0.69 11.81 16 7 O -0.58 -19.66 16.09 -3.02 -0.05 -19.71 16 8 N -0.70 -13.55 4.94 -442.55 -2.19 -15.74 16 9 C 0.17 4.58 2.29 44.99 0.10 4.68 16 10 H 0.06 1.99 7.48 -2.39 -0.02 1.97 16 11 C -0.15 -4.01 9.44 71.98 0.68 -3.33 16 12 C -0.11 -3.43 3.36 -10.13 -0.03 -3.46 16 13 C 0.17 7.73 6.98 86.48 0.60 8.33 16 14 N -0.64 -31.98 3.70 -716.71 -2.65 -34.63 16 15 C -0.23 -12.77 10.70 84.04 0.90 -11.87 16 16 H 0.09 4.46 7.83 -2.91 -0.02 4.44 16 17 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 18 N -0.95 -57.58 11.38 21.65 0.25 -57.34 16 19 Si 0.98 45.31 29.55 68.60 2.03 47.34 16 20 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 21 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 22 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 23 C 0.13 4.64 8.37 86.48 0.72 5.36 16 24 C 0.11 2.39 6.94 41.40 0.29 2.67 16 25 C -0.10 -1.42 9.95 71.24 0.71 -0.71 16 26 C -0.21 -4.76 6.63 22.02 0.15 -4.61 16 27 Cl -0.04 -0.70 28.58 -2.72 -0.08 -0.78 16 28 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.09 1.26 8.01 -2.39 -0.02 1.24 16 31 H 0.15 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.17 0.89 7.05 -2.39 -0.02 0.87 16 33 H 0.42 4.88 8.60 -92.70 -0.80 4.08 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 1.72 8.09 -2.39 -0.02 1.70 16 36 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 38 H 0.01 0.34 8.03 -2.39 -0.02 0.32 16 39 H 0.04 2.32 7.15 -2.39 -0.02 2.30 16 40 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 41 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 42 H 0.03 1.21 8.10 -2.39 -0.02 1.19 16 43 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.10 1.22 7.91 -2.39 -0.02 1.21 16 45 H 0.10 0.89 7.08 -2.39 -0.02 0.88 16 Total: -1.00 -80.97 392.30 2.77 -78.20 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.21 Total: 10.74 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 6.90 Total: 9.31 kcal Atomic # 7 Polarization: -118.86 SS G_CDS: -6.24 Total: -125.10 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.05 Total: -19.71 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -80.97 2.77 -78.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282744311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.414 kcal (2) G-P(sol) polarization free energy of solvation -80.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds