Wall clock time and date at job start Sat Apr 11 2020 05:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 5 5 N 1.39928 * 125.74644 * 60.02314 * 4 2 1 6 6 C 1.30415 * 108.95724 * 179.97438 * 5 4 2 7 7 C 1.41338 * 108.05025 * 0.02562 * 6 5 4 8 8 C 1.47295 * 126.43799 * 179.97438 * 7 6 5 9 9 O 1.21617 * 120.00142 * 179.97438 * 8 7 6 10 10 N 1.34782 * 119.99547 * 359.97438 * 8 7 6 11 11 C 1.46499 * 119.99462 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.46683 * 179.97438 * 11 10 8 13 13 H 1.09003 * 109.47219 * 294.99829 * 12 11 10 14 14 N 1.46500 * 109.47055 * 55.00355 * 12 11 10 15 15 C 1.36941 * 119.99583 * 204.99794 * 14 12 11 16 16 H 1.07998 * 120.00233 * 0.02562 * 15 14 12 17 17 C 1.38814 * 119.99660 * 179.97438 * 15 14 12 18 18 N 1.31615 * 120.00190 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99843 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46998 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46858 * 120.00251 * 19 17 15 22 22 H 1.48499 * 109.47481 * 240.00599 * 19 17 15 23 23 C 1.53009 * 109.47042 * 175.00073 * 12 11 10 24 24 C 1.52999 * 117.49600 * 248.75056 * 23 12 11 25 25 C 1.52996 * 117.49844 * 180.08690 * 23 12 11 26 26 C 1.34344 * 125.74935 * 239.71741 * 4 2 1 27 27 Cl 1.73598 * 126.32184 * 0.03749 * 26 4 2 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 35 35 H 1.08002 * 125.97091 * 179.97438 * 6 5 4 36 36 H 0.97000 * 120.00264 * 359.97438 * 10 8 7 37 37 H 1.08996 * 109.47477 * 299.99310 * 11 10 8 38 38 H 1.08994 * 109.47432 * 60.00306 * 11 10 8 39 39 H 0.96996 * 119.99838 * 24.99728 * 14 12 11 40 40 H 0.96996 * 120.00431 * 179.97438 * 18 17 15 41 41 H 1.09006 * 115.54867 * 34.41419 * 23 12 11 42 42 H 1.08996 * 117.50179 * 359.97438 * 24 23 12 43 43 H 1.08999 * 117.49961 * 145.02410 * 24 23 12 44 44 H 1.09000 * 117.49724 * 214.97512 * 25 23 12 45 45 H 1.08995 * 117.49824 * 359.97438 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 -1.1961 5 7 1.7560 -0.3187 -2.5193 6 6 2.3501 -1.1583 -3.3211 7 6 3.0259 -2.1153 -2.5306 8 6 3.8270 -3.2488 -3.0236 9 8 4.3612 -4.0047 -2.2347 10 7 3.9679 -3.4484 -4.3491 11 6 4.7651 -4.5754 -4.8394 12 6 4.7631 -4.5740 -6.3695 13 1 3.7514 -4.7572 -6.7317 14 7 5.2285 -3.2734 -6.8572 15 6 4.8519 -2.8328 -8.0979 16 1 4.2116 -3.4440 -8.7167 17 6 5.2925 -1.6001 -8.5599 18 7 6.0725 -0.8551 -7.8057 19 14 4.7795 -0.9994 -10.2526 20 1 3.9080 -2.0157 -10.8954 21 1 4.0344 0.2782 -10.1196 22 1 5.9878 -0.7832 -11.0884 23 6 5.6951 -5.6741 -6.8817 24 6 6.9837 -5.2386 -7.5822 25 6 5.8328 -5.8344 -8.3970 26 6 2.7984 -1.7844 -1.2074 27 17 3.4047 -2.6293 0.1826 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 2.3287 -1.1279 -4.4005 36 1 3.5415 -2.8457 -4.9784 37 1 5.7888 -4.4813 -4.4771 38 1 4.3356 -5.5093 -4.4768 39 1 5.8033 -2.7244 -6.3013 40 1 6.3806 0.0060 -8.1286 41 1 5.7333 -6.5784 -6.2743 42 1 7.1673 -4.1685 -7.6786 43 1 7.8696 -5.8567 -7.4362 44 1 5.9621 -6.8441 -8.7866 45 1 5.2592 -5.1565 -9.0290 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317021567.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:44 Heat of formation + Delta-G solvation = 53.205823 kcal Electronic energy + Delta-G solvation = -27360.857533 eV Core-core repulsion = 23441.538178 eV Total energy + Delta-G solvation = -3919.319354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.58895 -40.32235 -38.99959 -38.03284 -36.72487 -35.80457 -34.98632 -32.66031 -31.79875 -31.23194 -29.48478 -28.27400 -25.74814 -24.80492 -24.06292 -23.25490 -22.78845 -21.54801 -21.02527 -20.36862 -19.26453 -18.82290 -17.57964 -16.96505 -16.87808 -16.59825 -16.28066 -15.87397 -15.82589 -15.58242 -15.18807 -15.13701 -14.61003 -14.41952 -14.35924 -14.04647 -13.58466 -13.37263 -13.27519 -13.04848 -13.02497 -12.89007 -12.83729 -12.59827 -12.51638 -12.42457 -12.11735 -12.05886 -11.87998 -11.86353 -11.54013 -11.00303 -10.98004 -10.74002 -10.56201 -10.55993 -10.06980 -9.68406 -8.93321 -7.83187 -5.10159 0.14943 0.19750 1.01720 1.41071 1.51133 1.54575 1.61002 2.34531 2.43652 2.62762 3.18398 3.22325 3.52273 3.72748 3.82544 3.84425 3.95118 3.96635 4.05273 4.06836 4.31167 4.39737 4.43449 4.58330 4.61206 4.63824 4.66400 4.73620 4.74802 4.76960 5.01335 5.01559 5.06781 5.17483 5.24467 5.27468 5.32819 5.48390 5.53385 5.64330 5.72397 5.73608 6.26154 6.36804 6.70580 7.34586 7.45706 8.16977 8.42445 9.39226 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012563 B = 0.003158 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.318632 B = 8865.297717 C =10557.195230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.133 3.867 3 C -0.157 4.157 4 N -0.339 5.339 5 N -0.281 5.281 6 C 0.093 3.907 7 C -0.287 4.287 8 C 0.587 3.413 9 O -0.575 6.575 10 N -0.704 5.704 11 C 0.132 3.868 12 C 0.193 3.807 13 H 0.062 0.938 14 N -0.720 5.720 15 C -0.214 4.214 16 H 0.077 0.923 17 C -0.064 4.064 18 N -0.963 5.963 19 Si 0.953 3.047 20 H -0.268 1.268 21 H -0.300 1.300 22 H -0.305 1.305 23 C -0.167 4.167 24 C -0.174 4.174 25 C -0.170 4.170 26 C 0.176 3.824 27 Cl 0.032 6.968 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.211 0.789 36 H 0.409 0.591 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.374 0.626 40 H 0.245 0.755 41 H 0.115 0.885 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.703 -1.477 16.742 19.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.034 3.966 3 C -0.215 4.215 4 N -0.122 5.122 5 N -0.101 5.101 6 C -0.094 4.094 7 C -0.303 4.303 8 C 0.375 3.625 9 O -0.456 6.456 10 N -0.355 5.355 11 C 0.007 3.993 12 C 0.084 3.916 13 H 0.080 0.920 14 N -0.360 5.360 15 C -0.345 4.345 16 H 0.095 0.905 17 C -0.257 4.257 18 N -0.614 5.614 19 Si 0.784 3.216 20 H -0.192 1.192 21 H -0.227 1.227 22 H -0.233 1.233 23 C -0.188 4.188 24 C -0.211 4.211 25 C -0.207 4.207 26 C 0.016 3.984 27 Cl 0.060 6.940 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.128 0.872 31 H 0.138 0.862 32 H 0.129 0.871 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.227 0.773 36 H 0.246 0.754 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.207 0.793 40 H 0.054 0.946 41 H 0.133 0.867 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.118 0.882 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.184 -0.964 17.443 20.743 hybrid contribution 0.848 0.297 -1.279 1.563 sum -10.336 -0.667 16.164 19.198 Atomic orbital electron populations 1.22118 0.91101 1.03203 1.04763 1.22025 0.97402 0.94857 0.82326 1.22138 1.01388 0.93168 1.04760 1.49287 1.36244 1.19351 1.07303 1.77250 1.24239 1.22808 0.85843 1.24325 0.93339 0.90536 1.01182 1.19937 1.14373 1.04744 0.91247 1.17245 0.79555 0.83255 0.82446 1.90742 1.50496 1.48235 1.56102 1.45663 1.52434 1.31280 1.06107 1.21452 0.94930 0.89045 0.93836 1.20135 0.96033 0.85157 0.90294 0.91999 1.42541 1.58952 1.17251 1.17217 1.19445 1.22560 0.99265 0.93275 0.90542 1.25246 1.01455 0.98236 1.00753 1.69799 1.40686 1.12810 1.38118 0.85372 0.76778 0.77905 0.81497 1.19219 1.22727 1.23315 1.23063 1.00015 1.00759 0.94998 1.22766 0.91931 1.01068 1.05351 1.22841 1.02899 1.01184 0.93814 1.22136 0.95346 0.90122 0.90840 1.98432 1.84704 1.73783 1.37089 0.92428 0.91877 0.87199 0.86246 0.87100 0.92882 0.91954 0.77266 0.75436 0.93010 0.90087 0.79327 0.94552 0.86698 0.90433 0.89270 0.88166 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.45 71.98 0.68 -1.24 16 2 C 0.13 2.09 3.66 44.99 0.16 2.25 16 3 C -0.16 -2.16 9.45 71.98 0.68 -1.48 16 4 N -0.34 -8.11 3.25 -315.63 -1.03 -9.14 16 5 N -0.28 -7.66 12.33 -56.26 -0.69 -8.35 16 6 C 0.09 2.62 11.50 85.67 0.99 3.60 16 7 C -0.29 -8.84 6.13 -20.12 -0.12 -8.96 16 8 C 0.59 20.26 7.81 86.62 0.68 20.94 16 9 O -0.57 -22.28 15.64 -4.09 -0.06 -22.34 16 10 N -0.70 -23.17 5.38 -466.50 -2.51 -25.68 16 11 C 0.13 4.29 5.22 86.38 0.45 4.74 16 12 C 0.19 6.72 2.86 45.00 0.13 6.85 16 13 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 14 N -0.72 -31.37 3.08 -322.91 -0.99 -32.36 16 15 C -0.21 -10.40 8.15 84.03 0.69 -9.72 16 16 H 0.08 3.64 6.91 -2.91 -0.02 3.62 16 17 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 18 N -0.96 -55.28 13.06 21.65 0.28 -55.00 16 19 Si 0.95 43.96 29.55 68.60 2.03 45.99 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 21 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 22 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 23 C -0.17 -5.39 5.71 -10.79 -0.06 -5.45 16 24 C -0.17 -6.27 9.74 30.62 0.30 -5.97 16 25 C -0.17 -5.66 9.87 30.62 0.30 -5.36 16 26 C 0.18 4.84 7.53 84.32 0.63 5.47 16 27 Cl 0.03 0.78 27.00 -2.72 -0.07 0.71 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.12 1.51 7.23 -2.39 -0.02 1.49 16 32 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 35 H 0.21 5.27 7.50 -2.91 -0.02 5.25 16 36 H 0.41 13.36 7.09 -92.71 -0.66 12.71 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.37 18.41 7.80 -92.71 -0.72 17.68 16 40 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 41 H 0.12 3.11 8.11 -2.38 -0.02 3.10 16 42 H 0.08 3.50 6.68 -2.39 -0.02 3.48 16 43 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 44 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 45 H 0.08 3.02 6.22 -2.39 -0.01 3.00 16 Total: -1.00 -63.60 388.53 2.56 -61.04 By element: Atomic # 1 Polarization: 42.74 SS G_CDS: -0.35 Total: 42.39 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 5.97 Total: 2.74 kcal Atomic # 7 Polarization: -125.59 SS G_CDS: -4.94 Total: -130.53 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.06 Total: -22.34 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 17 Polarization: 0.78 SS G_CDS: -0.07 Total: 0.71 kcal Total: -63.60 2.56 -61.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317021567.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.244 kcal (2) G-P(sol) polarization free energy of solvation -63.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds