Wall clock time and date at job start Sat Apr 11 2020 05:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 5 5 N 1.39931 * 125.74832 * 60.02569 * 4 2 1 6 6 C 1.30415 * 108.96410 * 179.97438 * 5 4 2 7 7 C 1.41343 * 108.04321 * 0.02562 * 6 5 4 8 8 C 1.47299 * 126.43351 * 179.97438 * 7 6 5 9 9 O 1.21616 * 120.00007 * 179.97438 * 8 7 6 10 10 N 1.34782 * 119.99805 * 359.97438 * 8 7 6 11 11 C 1.46504 * 119.99606 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46963 * 324.99438 * 11 10 8 13 13 C 1.53007 * 109.46706 * 204.99807 * 11 10 8 14 14 N 1.46503 * 109.46984 * 55.00002 * 13 11 10 15 15 C 1.36940 * 119.99577 * 180.02562 * 14 13 11 16 16 H 1.07998 * 120.00129 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99946 * 180.02562 * 15 14 13 18 18 N 1.31620 * 119.99644 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99987 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47222 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47175 * 119.99838 * 19 17 15 22 22 H 1.48506 * 109.46907 * 239.99639 * 19 17 15 23 23 C 1.52995 * 109.47237 * 84.99726 * 11 10 8 24 24 C 1.53001 * 117.49956 * 8.74764 * 23 11 10 25 25 C 1.52996 * 117.49988 * 300.08417 * 23 11 10 26 26 C 1.34352 * 125.75342 * 239.71651 * 4 2 1 27 27 Cl 1.73600 * 126.31811 * 0.04151 * 26 4 2 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.07998 * 125.97727 * 179.97438 * 6 5 4 36 36 H 0.96999 * 120.00163 * 359.97438 * 10 8 7 37 37 H 1.08997 * 109.46858 * 174.99827 * 13 11 10 38 38 H 1.08996 * 109.47171 * 294.99920 * 13 11 10 39 39 H 0.96994 * 120.00335 * 359.97438 * 14 13 11 40 40 H 0.96998 * 119.99553 * 180.02562 * 18 17 15 41 41 H 1.09000 * 115.54815 * 154.41245 * 23 11 10 42 42 H 1.09002 * 117.50074 * 359.97438 * 24 23 11 43 43 H 1.08997 * 117.49919 * 145.01836 * 24 23 11 44 44 H 1.09003 * 117.49832 * 214.98272 * 25 23 11 45 45 H 1.09001 * 117.49921 * 0.02562 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 7 1.7559 -0.3187 -2.5193 6 6 2.3499 -1.1581 -3.3213 7 6 3.0257 -2.1153 -2.5308 8 6 3.8267 -3.2488 -3.0239 9 8 4.3609 -4.0047 -2.2350 10 7 3.9676 -3.4483 -4.3494 11 6 4.7638 -4.5761 -4.8398 12 1 5.6053 -4.7460 -4.1682 13 6 5.2866 -4.2595 -6.2425 14 7 6.0224 -2.9930 -6.2150 15 6 6.5850 -2.5030 -7.3634 16 1 6.4866 -3.0504 -8.2891 17 6 7.2828 -1.3032 -7.3373 18 7 7.4031 -0.6364 -6.2090 19 14 8.0496 -0.6345 -8.9039 20 1 7.7726 -1.5656 -10.0272 21 1 7.4689 0.6975 -9.2097 22 1 9.5174 -0.5043 -8.7200 23 6 3.8914 -5.8318 -4.8921 24 6 2.3905 -5.6599 -4.6499 25 6 3.2687 -6.3145 -3.5805 26 6 2.7984 -1.7844 -1.2075 27 17 3.4047 -2.6295 0.1824 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 2.3285 -1.1278 -4.4006 36 1 3.5412 -2.8456 -4.9786 37 1 5.9508 -5.0585 -6.5716 38 1 4.4473 -4.1771 -6.9331 39 1 6.1105 -2.5011 -5.3837 40 1 7.8903 0.2021 -6.1908 41 1 4.2015 -6.5901 -5.6110 42 1 2.0246 -4.6522 -4.4529 43 1 1.7132 -6.3053 -5.2092 44 1 3.1689 -7.3904 -3.4368 45 1 3.4802 -5.7372 -2.6805 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323050232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:59 Heat of formation + Delta-G solvation = 74.789777 kcal Electronic energy + Delta-G solvation = -27842.640607 eV Core-core repulsion = 23924.257203 eV Total energy + Delta-G solvation = -3918.383404 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.55564 -39.59018 -37.01830 -36.88402 -35.89935 -34.82629 -33.18668 -31.28736 -30.78046 -29.93872 -27.93974 -27.67281 -24.15822 -23.42299 -22.92658 -22.15084 -21.41243 -20.49617 -20.11257 -19.42789 -17.98007 -17.19718 -16.37570 -15.98082 -15.74027 -15.54772 -14.95799 -14.80989 -14.50790 -14.16549 -13.72436 -13.57304 -13.42415 -13.12962 -13.12089 -12.76637 -12.69388 -12.60302 -12.11473 -12.09004 -11.99894 -11.73894 -11.55693 -11.33420 -11.28326 -11.12262 -10.85854 -10.82581 -10.81281 -10.15432 -10.01630 -9.75741 -9.56856 -9.52795 -9.44445 -8.89105 -8.76640 -8.47367 -6.92541 -5.75183 -3.04788 1.23232 1.28289 2.13518 2.33181 3.43831 3.49734 3.51972 3.54420 3.67825 4.05336 4.17068 4.47948 4.54569 4.58974 4.67381 4.94265 5.01357 5.06131 5.15834 5.22414 5.27761 5.29998 5.34992 5.40177 5.49713 5.57644 5.69723 5.74363 5.80710 5.86526 5.93255 6.09000 6.10764 6.24375 6.30797 6.40766 6.43555 6.55560 6.63022 6.76243 7.03531 7.31735 7.71423 7.97251 8.42490 8.65872 9.54583 10.11027 10.46542 11.46972 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010107 B = 0.003692 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.574144 B = 7582.575615 C = 9371.621921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.147 3.853 3 C -0.162 4.162 4 N -0.349 5.349 5 N -0.271 5.271 6 C 0.094 3.906 7 C -0.262 4.262 8 C 0.593 3.407 9 O -0.537 6.537 10 N -0.703 5.703 11 C 0.172 3.828 12 H 0.092 0.908 13 C 0.148 3.852 14 N -0.731 5.731 15 C -0.241 4.241 16 H 0.071 0.929 17 C -0.012 4.012 18 N -0.929 5.929 19 Si 0.905 3.095 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.160 4.160 24 C -0.177 4.177 25 C -0.187 4.187 26 C 0.180 3.820 27 Cl 0.023 6.977 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.199 0.801 36 H 0.403 0.597 37 H 0.033 0.967 38 H 0.026 0.974 39 H 0.387 0.613 40 H 0.254 0.746 41 H 0.108 0.892 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.060 -1.994 13.706 21.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 C -0.220 4.220 4 N -0.132 5.132 5 N -0.092 5.092 6 C -0.094 4.094 7 C -0.278 4.278 8 C 0.380 3.620 9 O -0.416 6.416 10 N -0.353 5.353 11 C 0.067 3.933 12 H 0.110 0.890 13 C 0.020 3.980 14 N -0.376 5.376 15 C -0.372 4.372 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.578 5.578 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.179 4.179 24 C -0.215 4.215 25 C -0.224 4.224 26 C 0.022 3.978 27 Cl 0.051 6.949 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.216 0.784 36 H 0.238 0.762 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.221 0.779 40 H 0.064 0.936 41 H 0.126 0.874 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.349 -1.479 14.413 21.846 hybrid contribution 0.924 0.125 -0.886 1.286 sum -15.426 -1.353 13.527 20.561 Atomic orbital electron populations 1.22128 0.92548 1.03242 1.03826 1.21536 0.96166 0.94447 0.83262 1.22142 1.02268 0.93741 1.03806 1.48888 1.37472 1.20036 1.06798 1.77261 1.24154 1.22580 0.85168 1.24092 0.93813 0.90981 1.00466 1.19959 1.13079 1.04470 0.90307 1.16981 0.79477 0.82882 0.82620 1.90718 1.48663 1.46746 1.55467 1.45696 1.52796 1.30673 1.06137 1.20726 0.92390 0.83103 0.97095 0.89018 1.20912 0.94720 0.90438 0.91946 1.42362 1.63655 1.21484 1.10130 1.19250 1.26524 1.02864 0.88538 0.91122 1.24735 1.01270 0.97883 0.96889 1.69684 1.46681 1.16844 1.24558 0.86146 0.78860 0.78639 0.82693 1.20570 1.21929 1.21939 1.22693 0.94884 0.99858 1.00507 1.22878 0.92937 1.02044 1.03608 1.23340 1.03857 1.00316 0.94845 1.22033 0.95267 0.89677 0.90847 1.98438 1.84794 1.73834 1.37820 0.90680 0.90310 0.91892 0.87818 0.90324 0.91652 0.90625 0.78439 0.76233 0.94880 0.95613 0.77925 0.93606 0.87411 0.88959 0.89713 0.89968 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 9.45 37.16 0.35 -0.78 16 2 C 0.15 1.29 3.66 -67.94 -0.25 1.04 16 3 C -0.16 -1.30 9.44 37.15 0.35 -0.94 16 4 N -0.35 -4.29 3.25 -51.12 -0.17 -4.46 16 5 N -0.27 -3.66 12.33 30.87 0.38 -3.28 16 6 C 0.09 1.27 11.50 -16.97 -0.20 1.08 16 7 C -0.26 -3.96 6.13 -105.02 -0.64 -4.61 16 8 C 0.59 9.91 6.64 -12.57 -0.08 9.83 16 9 O -0.54 -10.04 12.67 5.26 0.07 -9.97 16 10 N -0.70 -11.20 3.05 -54.92 -0.17 -11.37 16 11 C 0.17 2.88 2.59 -67.93 -0.18 2.71 16 12 H 0.09 1.76 7.58 -51.93 -0.39 1.36 16 13 C 0.15 2.84 5.80 -4.04 -0.02 2.82 16 14 N -0.73 -17.88 5.43 -59.90 -0.33 -18.20 16 15 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -27.87 13.06 55.49 0.72 -27.14 16 19 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 23 C -0.16 -2.28 5.70 -90.62 -0.52 -2.79 16 24 C -0.18 -2.32 9.74 -26.69 -0.26 -2.58 16 25 C -0.19 -2.63 9.83 -26.69 -0.26 -2.89 16 26 C 0.18 2.52 7.53 -16.43 -0.12 2.39 16 27 Cl 0.02 0.30 27.00 -51.86 -1.40 -1.10 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.78 7.23 -51.93 -0.38 0.41 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.20 2.23 7.50 -52.49 -0.39 1.84 16 36 H 0.40 6.07 7.56 -40.82 -0.31 5.76 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.39 10.15 7.33 -40.82 -0.30 9.85 16 40 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.11 1.42 8.11 -51.93 -0.42 1.00 16 42 H 0.09 1.23 6.67 -51.93 -0.35 0.89 16 43 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.12 1.93 5.01 -51.93 -0.26 1.67 16 LS Contribution 385.72 15.07 5.81 5.81 Total: -1.00 -32.17 385.72 -8.75 -40.92 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -6.57 Total: 13.49 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -2.08 Total: -1.87 kcal Atomic # 7 Polarization: -64.90 SS G_CDS: 0.45 Total: -64.45 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.07 Total: -9.97 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -1.40 Total: -1.10 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.17 -8.75 -40.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323050232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.711 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds