Wall clock time and date at job start Sat Apr 11 2020 06:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46506 * 109.47289 * 240.00314 * 2 1 3 5 5 N 1.39922 * 125.74650 * 60.02050 * 4 2 1 6 6 C 1.30411 * 108.95990 * 179.97438 * 5 4 2 7 7 C 1.41341 * 108.04642 * 0.02562 * 6 5 4 8 8 C 1.47302 * 126.43620 * 180.02562 * 7 6 5 9 9 O 1.21620 * 120.00125 * 179.97438 * 8 7 6 10 10 N 1.34778 * 119.99915 * 359.97092 * 8 7 6 11 11 C 1.46500 * 119.99695 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47419 * 35.00366 * 11 10 8 13 13 C 1.53003 * 109.47076 * 155.00338 * 11 10 8 14 14 N 1.46500 * 109.46877 * 304.99878 * 13 11 10 15 15 C 1.36936 * 120.00287 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99530 * 359.97438 * 15 14 13 17 17 C 1.38812 * 120.00373 * 180.02562 * 15 14 13 18 18 N 1.31619 * 119.99678 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99955 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47456 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47165 * 119.99969 * 19 17 15 22 22 H 1.48500 * 109.47020 * 239.99841 * 19 17 15 23 23 C 1.53000 * 109.47230 * 274.99652 * 11 10 8 24 24 C 1.52997 * 117.49955 * 128.74573 * 23 11 10 25 25 C 1.53006 * 117.49655 * 60.08865 * 23 11 10 26 26 C 1.34348 * 125.75001 * 239.71556 * 4 2 1 27 27 Cl 1.73593 * 126.31734 * 0.03966 * 26 4 2 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 32 32 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 33 33 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 35 35 H 1.08000 * 125.98241 * 179.97438 * 6 5 4 36 36 H 0.96996 * 119.99865 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.47217 * 64.99450 * 13 11 10 38 38 H 1.08998 * 109.47131 * 184.99707 * 13 11 10 39 39 H 0.97001 * 119.99854 * 359.97438 * 14 13 11 40 40 H 0.97007 * 119.99635 * 180.02562 * 18 17 15 41 41 H 1.08997 * 115.55537 * 274.42368 * 23 11 10 42 42 H 1.09001 * 117.49607 * 0.02562 * 24 23 11 43 43 H 1.09005 * 117.50229 * 145.01936 * 24 23 11 44 44 H 1.08994 * 117.50192 * 214.97618 * 25 23 11 45 45 H 1.08998 * 117.49766 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 7 1.7559 -0.3185 -2.5193 6 6 2.3500 -1.1579 -3.3213 7 6 3.0259 -2.1150 -2.5309 8 6 3.8278 -3.2479 -3.0241 9 8 4.3620 -4.0039 -2.2352 10 7 3.9695 -3.4467 -4.3495 11 6 4.7667 -4.5738 -4.8400 12 1 4.6452 -5.4241 -4.1689 13 6 4.2945 -4.9601 -6.2431 14 7 2.8549 -5.2305 -6.2167 15 6 2.2059 -5.5975 -7.3653 16 1 2.7554 -5.6873 -8.2908 17 6 0.8418 -5.8532 -7.3404 18 7 0.1722 -5.7433 -6.2126 19 14 -0.0432 -6.3546 -8.9071 20 1 0.9278 -6.4061 -10.0294 21 1 -0.6576 -7.6938 -8.7216 22 1 -1.1037 -5.3620 -9.2159 23 6 6.2418 -4.1711 -4.8913 24 6 7.2515 -5.0992 -4.2130 25 6 6.9052 -3.7499 -3.5784 26 6 2.7984 -1.7843 -1.2077 27 17 3.4047 -2.6293 0.1822 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 2.3286 -1.1276 -4.4007 36 1 3.5438 -2.8436 -4.9787 37 1 4.4977 -4.1412 -6.9332 38 1 4.8260 -5.8530 -6.5723 39 1 2.3616 -5.1502 -5.3854 40 1 -0.7810 -5.9223 -6.1951 41 1 6.5588 -3.6617 -5.8013 42 1 6.8648 -5.9968 -3.7306 43 1 8.2328 -5.2002 -4.6766 44 1 7.6588 -2.9638 -3.6248 45 1 6.2906 -3.7593 -2.6783 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323050234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:01 Heat of formation + Delta-G solvation = 50.351704 kcal Electronic energy + Delta-G solvation = -27658.340822 eV Core-core repulsion = 23738.897704 eV Total energy + Delta-G solvation = -3919.443118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.58524 -40.68874 -38.26598 -38.00618 -36.71534 -36.54909 -34.88368 -32.99929 -31.79372 -31.18255 -29.39083 -28.27524 -25.96331 -24.48873 -23.99661 -23.13672 -22.97862 -21.52275 -21.35737 -20.89726 -19.28501 -18.79552 -17.50517 -17.30984 -16.84873 -16.62447 -16.30252 -15.88085 -15.76276 -15.51400 -15.10403 -15.00410 -14.80254 -14.47632 -14.34506 -13.99517 -13.64259 -13.36152 -13.27034 -13.14780 -13.04363 -13.01446 -12.80685 -12.63435 -12.44370 -12.39656 -12.21377 -12.11083 -11.99930 -11.86078 -11.80510 -11.18810 -11.02967 -10.95109 -10.69989 -10.54924 -9.96432 -9.68280 -8.96558 -7.90215 -5.19396 0.15820 0.22169 1.03735 1.41564 1.50424 1.51142 1.60910 2.27086 2.42243 2.59132 3.07058 3.25359 3.44533 3.65118 3.73243 3.82568 3.85447 3.96588 4.03960 4.06395 4.20032 4.23183 4.33353 4.53002 4.54082 4.61519 4.63593 4.71029 4.73905 4.74684 4.88666 4.97354 5.06660 5.11404 5.17265 5.19387 5.27572 5.36574 5.46204 5.54169 5.55099 5.68826 6.27289 6.30089 6.71176 7.37883 7.38643 8.11804 8.35794 9.32807 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009583 B = 0.003709 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.157475 B = 7547.476495 C = 9633.055466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.133 3.867 3 C -0.153 4.153 4 N -0.340 5.340 5 N -0.280 5.280 6 C 0.092 3.908 7 C -0.286 4.286 8 C 0.593 3.407 9 O -0.565 6.565 10 N -0.698 5.698 11 C 0.183 3.817 12 H 0.060 0.940 13 C 0.150 3.850 14 N -0.742 5.742 15 C -0.239 4.239 16 H 0.079 0.921 17 C -0.072 4.072 18 N -0.967 5.967 19 Si 0.970 3.030 20 H -0.264 1.264 21 H -0.299 1.299 22 H -0.294 1.294 23 C -0.163 4.163 24 C -0.164 4.164 25 C -0.182 4.182 26 C 0.174 3.826 27 Cl 0.030 6.970 28 H 0.111 0.889 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.118 0.882 32 H 0.109 0.891 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.215 0.785 36 H 0.406 0.594 37 H 0.042 0.958 38 H 0.036 0.964 39 H 0.374 0.626 40 H 0.248 0.752 41 H 0.121 0.879 42 H 0.081 0.919 43 H 0.114 0.886 44 H 0.100 0.900 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.359 15.224 13.513 22.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.034 3.966 3 C -0.211 4.211 4 N -0.123 5.123 5 N -0.101 5.101 6 C -0.095 4.095 7 C -0.302 4.302 8 C 0.381 3.619 9 O -0.446 6.446 10 N -0.348 5.348 11 C 0.078 3.922 12 H 0.078 0.922 13 C 0.024 3.976 14 N -0.385 5.385 15 C -0.371 4.371 16 H 0.097 0.903 17 C -0.265 4.265 18 N -0.618 5.618 19 Si 0.800 3.200 20 H -0.188 1.188 21 H -0.227 1.227 22 H -0.222 1.222 23 C -0.183 4.183 24 C -0.202 4.202 25 C -0.219 4.219 26 C 0.014 3.986 27 Cl 0.058 6.942 28 H 0.129 0.871 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.136 0.864 32 H 0.127 0.873 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.231 0.769 36 H 0.242 0.758 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.207 0.793 40 H 0.057 0.943 41 H 0.139 0.861 42 H 0.100 0.900 43 H 0.132 0.868 44 H 0.119 0.881 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.995 15.697 14.194 22.623 hybrid contribution -0.659 -1.166 -0.713 1.518 sum 7.335 14.531 13.481 21.135 Atomic orbital electron populations 1.22135 0.91669 1.02875 1.04789 1.22008 0.97006 0.95245 0.82350 1.22111 1.01555 0.92614 1.04786 1.49255 1.36179 1.19515 1.07313 1.77219 1.23657 1.23431 0.85799 1.24352 0.93162 0.90637 1.01303 1.19951 1.14454 1.04533 0.91246 1.17186 0.79108 0.83122 0.82509 1.90688 1.50051 1.47783 1.56030 1.45606 1.52300 1.30718 1.06151 1.20527 0.88747 0.88033 0.94888 0.92230 1.21043 0.84516 0.98364 0.93705 1.42531 1.04180 1.82895 1.08919 1.19657 0.91301 1.36635 0.89517 0.90278 1.25503 0.97585 1.03677 0.99705 1.69849 1.07604 1.57675 1.26693 0.85122 0.78480 0.76690 0.79744 1.18848 1.22650 1.22154 1.22559 0.92001 1.05724 0.97977 1.22966 0.99842 0.93931 1.03454 1.23187 1.03273 0.98380 0.97011 1.22143 0.95451 0.90096 0.90867 1.98432 1.84658 1.73882 1.37238 0.87093 0.93150 0.91848 0.86443 0.87262 0.92379 0.91760 0.76854 0.75809 0.94012 0.94573 0.79346 0.94282 0.86141 0.90026 0.86797 0.88148 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.45 71.98 0.68 -1.64 16 2 C 0.13 2.18 3.66 44.99 0.16 2.34 16 3 C -0.15 -1.91 9.44 71.98 0.68 -1.23 16 4 N -0.34 -8.28 3.25 -315.65 -1.03 -9.31 16 5 N -0.28 -7.57 12.33 -56.26 -0.69 -8.27 16 6 C 0.09 2.53 11.50 85.67 0.99 3.52 16 7 C -0.29 -8.86 6.13 -20.12 -0.12 -8.98 16 8 C 0.59 20.49 7.14 86.63 0.62 21.11 16 9 O -0.56 -21.80 12.67 -4.09 -0.05 -21.85 16 10 N -0.70 -22.84 4.49 -445.91 -2.00 -24.84 16 11 C 0.18 6.18 2.43 44.99 0.11 6.29 16 12 H 0.06 2.37 7.33 -2.39 -0.02 2.35 16 13 C 0.15 5.71 5.80 86.38 0.50 6.22 16 14 N -0.74 -36.52 5.43 -343.45 -1.87 -38.38 16 15 C -0.24 -12.97 9.99 84.03 0.84 -12.13 16 16 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 17 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 18 N -0.97 -59.04 13.06 21.65 0.28 -58.76 16 19 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 20 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 21 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 22 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 23 C -0.16 -4.44 5.36 -10.79 -0.06 -4.50 16 24 C -0.16 -4.15 10.18 30.62 0.31 -3.84 16 25 C -0.18 -4.88 9.74 30.62 0.30 -4.58 16 26 C 0.17 4.92 7.53 84.32 0.63 5.55 16 27 Cl 0.03 0.77 27.00 -2.72 -0.07 0.69 16 28 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.12 1.60 7.23 -2.39 -0.02 1.58 16 32 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.22 4.86 7.50 -2.91 -0.02 4.84 16 36 H 0.41 12.39 7.55 -92.71 -0.70 11.69 16 37 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.37 20.16 7.33 -92.71 -0.68 19.48 16 40 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 41 H 0.12 2.87 8.11 -2.39 -0.02 2.85 16 42 H 0.08 2.27 8.05 -2.39 -0.02 2.25 16 43 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 44 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.10 3.11 5.01 -2.39 -0.01 3.10 16 Total: -1.00 -69.61 388.64 2.35 -67.26 By element: Atomic # 1 Polarization: 41.58 SS G_CDS: -0.35 Total: 41.23 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 6.11 Total: 4.50 kcal Atomic # 7 Polarization: -134.25 SS G_CDS: -5.31 Total: -139.56 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.05 Total: -21.85 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Atomic # 17 Polarization: 0.77 SS G_CDS: -0.07 Total: 0.69 kcal Total: -69.61 2.35 -67.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323050234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.609 kcal (2) G-P(sol) polarization free energy of solvation -69.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds