Wall clock time and date at job start Sat Apr 11 2020 06:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30854 * 125.89307 * 2 1 4 4 N 1.40082 * 108.22707 * 180.02562 * 3 2 1 5 5 C 1.46499 * 126.03632 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46871 * 90.02902 * 5 4 3 7 7 O 1.21271 * 120.00279 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99737 * 180.27449 * 6 5 4 9 9 C 1.46500 * 120.00103 * 179.72517 * 8 6 5 10 10 C 1.53005 * 110.63736 * 300.69983 * 9 8 6 11 11 C 1.55159 * 110.72205 * 177.55985 * 9 8 6 12 12 C 1.55391 * 101.36270 * 277.04250 * 11 9 8 13 13 N 1.47425 * 104.87104 * 323.01532 * 12 11 9 14 14 C 1.36939 * 125.64419 * 204.09727 * 13 12 11 15 15 H 1.07997 * 119.99904 * 169.98514 * 14 13 12 16 16 C 1.38817 * 120.00014 * 349.98505 * 14 13 12 17 17 N 1.31611 * 120.00114 * 350.42407 * 16 14 13 18 18 Si 1.86804 * 119.99820 * 170.42451 * 16 14 13 19 19 H 1.48495 * 109.47459 * 94.13717 * 18 16 14 20 20 H 1.48507 * 109.46922 * 214.14178 * 18 16 14 21 21 H 1.48499 * 109.47108 * 334.13610 * 18 16 14 22 22 C 1.47014 * 108.70579 * 24.13556 * 13 12 11 23 23 C 1.35038 * 107.92390 * 0.26621 * 4 3 2 24 24 C 1.50704 * 126.13762 * 179.71296 * 23 4 3 25 25 C 1.35378 * 107.73347 * 359.57325 * 23 4 3 26 26 Cl 1.73598 * 126.05213 * 180.18211 * 25 23 4 27 27 H 1.08997 * 109.47152 * 89.97643 * 1 2 3 28 28 H 1.09004 * 109.46426 * 209.97515 * 1 2 3 29 29 H 1.08998 * 109.46955 * 329.97290 * 1 2 3 30 30 H 1.08997 * 109.47046 * 330.02603 * 5 4 3 31 31 H 1.09003 * 109.46899 * 210.02993 * 5 4 3 32 32 H 0.97009 * 120.00280 * 359.72407 * 8 6 5 33 33 H 1.08994 * 109.47022 * 59.30167 * 10 9 8 34 34 H 1.09004 * 109.46559 * 179.29926 * 10 9 8 35 35 H 1.08997 * 109.47148 * 299.29373 * 10 9 8 36 36 H 1.09002 * 111.00272 * 35.21214 * 11 9 8 37 37 H 1.09000 * 111.00431 * 159.06475 * 11 9 8 38 38 H 1.09005 * 110.33899 * 204.16816 * 12 11 9 39 39 H 1.08997 * 110.35160 * 81.87095 * 12 11 9 40 40 H 0.97006 * 120.00411 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.88111 * 239.52205 * 22 13 12 42 42 H 1.08997 * 109.88182 * 118.35612 * 22 13 12 43 43 H 1.09002 * 109.47050 * 89.99439 * 24 23 4 44 44 H 1.08996 * 109.47455 * 209.99948 * 24 23 4 45 45 H 1.09001 * 109.46796 * 329.99931 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0601 0.0000 4 7 3.6089 0.6350 -0.0006 5 6 4.7897 1.5022 -0.0013 6 6 5.1956 1.7992 1.4192 7 8 4.5609 1.3328 2.3414 8 7 6.2604 2.5881 1.6649 9 6 6.6515 2.8817 3.0458 10 6 5.5088 3.5699 3.7952 11 6 7.9341 3.7542 3.0795 12 6 9.0421 2.6758 2.9246 13 7 8.5512 1.5161 3.6911 14 6 9.3312 0.5298 4.2333 15 1 8.8977 -0.1893 4.9125 16 6 10.6791 0.4543 3.9099 17 7 11.1674 1.2047 2.9452 18 14 11.7997 -0.7124 4.8439 19 1 11.8965 -1.9996 4.1100 20 1 13.1513 -0.1091 4.9658 21 1 11.2423 -0.9558 6.1987 22 6 7.0855 1.5934 3.7761 23 6 3.6150 -0.7154 -0.0069 24 6 4.8361 -1.5986 -0.0159 25 6 2.3275 -1.1336 -0.0006 26 17 1.7893 -2.7840 -0.0004 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3632 -0.8903 0.5135 29 1 -0.3633 0.8897 0.5142 30 1 4.5552 2.4346 -0.5148 31 1 5.6089 1.0001 -0.5160 32 1 6.7679 2.9614 0.9272 33 1 4.6326 2.9217 3.7962 34 1 5.8153 3.7682 4.8223 35 1 5.2646 4.5103 3.3010 36 1 7.9499 4.4578 2.2471 37 1 8.0267 4.2761 4.0320 38 1 9.9824 3.0360 3.3422 39 1 9.1690 2.4107 1.8750 40 1 12.1092 1.1517 2.7189 41 1 6.7766 1.6373 4.8205 42 1 6.6398 0.7246 3.2917 43 1 5.1346 -1.8163 1.0096 44 1 4.6069 -2.5303 -0.5331 45 1 5.6500 -1.0880 -0.5306 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324670934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:08 Heat of formation + Delta-G solvation = 60.732601 kcal Electronic energy + Delta-G solvation = -28056.475191 eV Core-core repulsion = 24137.482223 eV Total energy + Delta-G solvation = -3918.992969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.57204 -39.93040 -37.45203 -36.44622 -34.26685 -34.08224 -32.32522 -31.79239 -30.38389 -29.55397 -28.72667 -27.09945 -26.17092 -25.71932 -23.67849 -21.45007 -20.60891 -20.46375 -19.58791 -19.15647 -17.56285 -17.03064 -16.71925 -15.59562 -15.48045 -15.28192 -14.72765 -14.51114 -14.12360 -13.92476 -13.83093 -13.45530 -13.35603 -13.18289 -12.92946 -12.66236 -12.59011 -12.39147 -12.27947 -12.13897 -11.88902 -11.84566 -11.77750 -11.66161 -11.30572 -11.02651 -10.85530 -10.52786 -10.51148 -10.45661 -10.16851 -10.09644 -9.76470 -9.63835 -9.13734 -8.78555 -8.62861 -8.37200 -6.83925 -5.79995 -3.11236 1.53921 1.84303 2.45515 2.60986 2.67971 3.30455 3.36683 3.42949 3.45229 4.31241 4.38400 4.45647 4.62608 4.73215 4.77783 4.93333 5.07447 5.15195 5.30742 5.41069 5.42807 5.44482 5.47974 5.51620 5.65745 5.67276 5.78627 5.89068 5.93654 6.08017 6.12786 6.22854 6.32741 6.34903 6.42919 6.60816 6.65731 6.76686 7.02603 7.38500 7.46612 7.49321 7.64861 7.72314 8.20239 8.31767 9.15419 9.76937 10.44056 11.33431 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013900 B = 0.003077 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.868049 B = 9096.249287 C =10399.581726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.092 3.908 3 N -0.276 5.276 4 N -0.345 5.345 5 C 0.114 3.886 6 C 0.498 3.502 7 O -0.516 6.516 8 N -0.703 5.703 9 C 0.162 3.838 10 C -0.151 4.151 11 C -0.149 4.149 12 C 0.175 3.825 13 N -0.603 5.603 14 C -0.226 4.226 15 H 0.075 0.925 16 C -0.007 4.007 17 N -0.920 5.920 18 Si 0.910 3.090 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.138 3.862 23 C 0.123 3.877 24 C -0.100 4.100 25 C -0.191 4.191 26 Cl -0.046 7.046 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.399 0.601 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.026 0.974 40 H 0.252 0.748 41 H 0.030 0.970 42 H 0.031 0.969 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.876 1.366 -10.009 18.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.075 4.075 3 N -0.098 5.098 4 N -0.126 5.126 5 C -0.012 4.012 6 C 0.281 3.719 7 O -0.391 6.391 8 N -0.355 5.355 9 C 0.076 3.924 10 C -0.209 4.209 11 C -0.188 4.188 12 C 0.049 3.951 13 N -0.329 5.329 14 C -0.354 4.354 15 H 0.093 0.907 16 C -0.203 4.203 17 N -0.568 5.568 18 Si 0.740 3.260 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.012 3.988 23 C -0.005 4.005 24 C -0.158 4.158 25 C -0.229 4.229 26 Cl -0.018 7.018 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.233 0.767 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.043 0.957 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.049 0.951 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.998 2.185 -9.320 18.644 hybrid contribution 1.030 -1.400 0.069 1.740 sum -14.969 0.784 -9.251 17.614 Atomic orbital electron populations 1.20206 0.86088 1.03711 1.03138 1.22199 0.97199 0.88927 0.99178 1.77415 0.85723 1.21563 1.25073 1.47536 1.04898 1.03325 1.56884 1.21566 0.85706 0.96922 0.97002 1.20501 0.81132 0.79501 0.90748 1.90743 1.52866 1.50369 1.45089 1.45903 1.30034 1.50436 1.09137 1.21354 0.94158 0.96514 0.80346 1.22049 0.99154 0.99865 0.99844 1.23446 0.95412 0.98206 1.01701 1.21481 0.93989 0.84300 0.95281 1.44475 0.99429 1.25295 1.63699 1.19025 0.90365 1.06086 1.19927 0.90723 1.24785 0.97411 0.99834 0.98318 1.69930 1.13251 1.43056 1.30543 0.86140 0.80274 0.80109 0.79482 1.21630 1.21606 1.20581 1.21579 0.86266 0.94148 0.96832 1.20709 0.96306 0.84722 0.98811 1.20587 0.92398 0.98128 1.04659 1.20213 0.92014 0.86779 1.23913 1.98295 1.89759 1.15861 1.97872 0.90270 0.90146 0.90522 0.85635 0.85766 0.76655 0.90878 0.91710 0.93107 0.91618 0.90454 0.91156 0.95652 0.93767 0.95209 0.95082 0.88975 0.89188 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.31 36.01 0.37 -0.32 16 2 C 0.09 1.23 7.22 -82.37 -0.59 0.64 16 3 N -0.28 -4.08 12.57 33.69 0.42 -3.66 16 4 N -0.35 -4.74 3.10 -58.28 -0.18 -4.92 16 5 C 0.11 1.26 6.73 -5.19 -0.03 1.23 16 6 C 0.50 7.38 7.11 -10.99 -0.08 7.31 16 7 O -0.52 -9.79 13.38 5.56 0.07 -9.71 16 8 N -0.70 -9.98 5.15 -45.91 -0.24 -10.22 16 9 C 0.16 2.73 0.80 -129.98 -0.10 2.62 16 10 C -0.15 -2.32 8.41 37.16 0.31 -2.01 16 11 C -0.15 -2.50 6.11 -24.32 -0.15 -2.65 16 12 C 0.17 3.91 5.41 -2.27 -0.01 3.90 16 13 N -0.60 -15.04 3.40 -169.77 -0.58 -15.62 16 14 C -0.23 -6.25 10.24 -15.06 -0.15 -6.41 16 15 H 0.07 2.05 7.85 -52.49 -0.41 1.64 16 16 C -0.01 -0.20 5.40 -17.43 -0.09 -0.29 16 17 N -0.92 -26.08 10.68 55.49 0.59 -25.49 16 18 Si 0.91 21.83 29.56 -169.99 -5.03 16.80 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 C 0.14 2.98 6.16 -3.07 -0.02 2.96 16 23 C 0.12 1.65 6.94 -82.20 -0.57 1.08 16 24 C -0.10 -1.12 9.94 36.01 0.36 -0.76 16 25 C -0.19 -2.56 6.63 -39.97 -0.27 -2.83 16 26 Cl -0.05 -0.53 28.59 -51.86 -1.48 -2.01 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.69 8.01 -51.93 -0.42 0.28 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.12 1.05 7.04 -51.93 -0.37 0.68 16 32 H 0.40 4.54 8.48 -40.82 -0.35 4.19 16 33 H 0.07 1.26 6.20 -51.93 -0.32 0.94 16 34 H 0.06 0.97 8.12 -51.93 -0.42 0.54 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 37 H 0.08 1.28 8.05 -51.93 -0.42 0.87 16 38 H 0.07 1.78 6.94 -51.93 -0.36 1.42 16 39 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 40 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.03 0.67 7.80 -51.93 -0.41 0.26 16 42 H 0.03 0.73 6.68 -51.93 -0.35 0.39 16 43 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.09 0.86 7.91 -51.93 -0.41 0.45 16 45 H 0.08 0.73 7.08 -51.93 -0.37 0.37 16 LS Contribution 380.47 15.07 5.73 5.73 Total: -1.00 -34.15 380.47 -8.39 -42.54 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.68 Total: 2.08 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -1.03 Total: 4.48 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 0.02 Total: -59.91 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.07 Total: -9.71 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.48 Total: -2.01 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.15 -8.39 -42.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324670934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.272 kcal (2) G-P(sol) polarization free energy of solvation -34.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds