Wall clock time and date at job start Sat Apr 11 2020 06:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30854 * 125.89307 * 2 1 4 4 N 1.40082 * 108.22707 * 180.02562 * 3 2 1 5 5 C 1.46499 * 126.03632 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46871 * 90.02902 * 5 4 3 7 7 O 1.21271 * 120.00279 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99737 * 180.27449 * 6 5 4 9 9 C 1.46500 * 120.00103 * 179.72517 * 8 6 5 10 10 C 1.53005 * 110.63736 * 300.69983 * 9 8 6 11 11 C 1.55159 * 110.72205 * 177.55985 * 9 8 6 12 12 C 1.55391 * 101.36270 * 277.04250 * 11 9 8 13 13 N 1.47425 * 104.87104 * 323.01532 * 12 11 9 14 14 C 1.36939 * 125.64419 * 204.09727 * 13 12 11 15 15 H 1.07997 * 119.99904 * 169.98514 * 14 13 12 16 16 C 1.38817 * 120.00014 * 349.98505 * 14 13 12 17 17 N 1.31611 * 120.00114 * 350.42407 * 16 14 13 18 18 Si 1.86804 * 119.99820 * 170.42451 * 16 14 13 19 19 H 1.48495 * 109.47459 * 94.13717 * 18 16 14 20 20 H 1.48507 * 109.46922 * 214.14178 * 18 16 14 21 21 H 1.48499 * 109.47108 * 334.13610 * 18 16 14 22 22 C 1.47014 * 108.70579 * 24.13556 * 13 12 11 23 23 C 1.35038 * 107.92390 * 0.26621 * 4 3 2 24 24 C 1.50704 * 126.13762 * 179.71296 * 23 4 3 25 25 C 1.35378 * 107.73347 * 359.57325 * 23 4 3 26 26 Cl 1.73598 * 126.05213 * 180.18211 * 25 23 4 27 27 H 1.08997 * 109.47152 * 89.97643 * 1 2 3 28 28 H 1.09004 * 109.46426 * 209.97515 * 1 2 3 29 29 H 1.08998 * 109.46955 * 329.97290 * 1 2 3 30 30 H 1.08997 * 109.47046 * 330.02603 * 5 4 3 31 31 H 1.09003 * 109.46899 * 210.02993 * 5 4 3 32 32 H 0.97009 * 120.00280 * 359.72407 * 8 6 5 33 33 H 1.08994 * 109.47022 * 59.30167 * 10 9 8 34 34 H 1.09004 * 109.46559 * 179.29926 * 10 9 8 35 35 H 1.08997 * 109.47148 * 299.29373 * 10 9 8 36 36 H 1.09002 * 111.00272 * 35.21214 * 11 9 8 37 37 H 1.09000 * 111.00431 * 159.06475 * 11 9 8 38 38 H 1.09005 * 110.33899 * 204.16816 * 12 11 9 39 39 H 1.08997 * 110.35160 * 81.87095 * 12 11 9 40 40 H 0.97006 * 120.00411 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.88111 * 239.52205 * 22 13 12 42 42 H 1.08997 * 109.88182 * 118.35612 * 22 13 12 43 43 H 1.09002 * 109.47050 * 89.99439 * 24 23 4 44 44 H 1.08996 * 109.47455 * 209.99948 * 24 23 4 45 45 H 1.09001 * 109.46796 * 329.99931 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0601 0.0000 4 7 3.6089 0.6350 -0.0006 5 6 4.7897 1.5022 -0.0013 6 6 5.1956 1.7992 1.4192 7 8 4.5609 1.3328 2.3414 8 7 6.2604 2.5881 1.6649 9 6 6.6515 2.8817 3.0458 10 6 5.5088 3.5699 3.7952 11 6 7.9341 3.7542 3.0795 12 6 9.0421 2.6758 2.9246 13 7 8.5512 1.5161 3.6911 14 6 9.3312 0.5298 4.2333 15 1 8.8977 -0.1893 4.9125 16 6 10.6791 0.4543 3.9099 17 7 11.1674 1.2047 2.9452 18 14 11.7997 -0.7124 4.8439 19 1 11.8965 -1.9996 4.1100 20 1 13.1513 -0.1091 4.9658 21 1 11.2423 -0.9558 6.1987 22 6 7.0855 1.5934 3.7761 23 6 3.6150 -0.7154 -0.0069 24 6 4.8361 -1.5986 -0.0159 25 6 2.3275 -1.1336 -0.0006 26 17 1.7893 -2.7840 -0.0004 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3632 -0.8903 0.5135 29 1 -0.3633 0.8897 0.5142 30 1 4.5552 2.4346 -0.5148 31 1 5.6089 1.0001 -0.5160 32 1 6.7679 2.9614 0.9272 33 1 4.6326 2.9217 3.7962 34 1 5.8153 3.7682 4.8223 35 1 5.2646 4.5103 3.3010 36 1 7.9499 4.4578 2.2471 37 1 8.0267 4.2761 4.0320 38 1 9.9824 3.0360 3.3422 39 1 9.1690 2.4107 1.8750 40 1 12.1092 1.1517 2.7189 41 1 6.7766 1.6373 4.8205 42 1 6.6398 0.7246 3.2917 43 1 5.1346 -1.8163 1.0096 44 1 4.6069 -2.5303 -0.5331 45 1 5.6500 -1.0880 -0.5306 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324670934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:07 Heat of formation + Delta-G solvation = 38.126692 kcal Electronic energy + Delta-G solvation = -28057.455457 eV Core-core repulsion = 24137.482223 eV Total energy + Delta-G solvation = -3919.973235 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.55158 -41.22073 -38.94710 -37.39740 -35.76917 -35.20185 -33.79148 -32.97099 -31.85902 -30.64832 -30.26676 -28.04739 -27.59299 -27.08624 -25.36569 -22.71112 -22.19346 -21.56645 -20.59385 -20.53137 -19.03591 -18.39230 -17.98169 -17.01007 -16.71178 -16.56879 -16.33834 -15.69790 -15.57220 -15.20529 -14.97853 -14.72893 -14.39642 -14.23573 -14.23047 -14.06989 -13.72227 -13.39521 -13.38563 -13.31416 -13.23604 -13.11213 -12.93561 -12.84442 -12.79965 -12.73417 -12.24660 -12.17507 -12.04019 -11.95540 -11.75380 -11.64795 -11.47223 -10.92539 -10.69112 -10.17029 -10.09375 -9.36089 -8.86521 -7.90997 -5.23892 0.53278 0.91466 1.44507 1.45334 1.48001 1.51598 1.55094 1.68591 2.19496 2.47409 3.28224 3.41451 3.48662 3.51308 3.68023 3.71947 3.86841 3.97463 3.99762 4.11557 4.14754 4.27769 4.53090 4.58596 4.65503 4.65997 4.76673 4.77574 4.82034 4.86245 4.88565 4.93924 4.98843 5.02218 5.07166 5.28781 5.41779 5.45280 5.58685 5.60623 5.73183 5.74626 6.19100 6.50548 6.53894 7.08077 7.20206 7.74139 8.39987 9.20255 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013900 B = 0.003077 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.868049 B = 9096.249287 C =10399.581726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.084 3.916 3 N -0.303 5.303 4 N -0.353 5.353 5 C 0.115 3.885 6 C 0.496 3.504 7 O -0.562 6.562 8 N -0.695 5.695 9 C 0.173 3.827 10 C -0.141 4.141 11 C -0.128 4.128 12 C 0.179 3.821 13 N -0.621 5.621 14 C -0.248 4.248 15 H 0.065 0.935 16 C -0.053 4.053 17 N -0.939 5.939 18 Si 0.971 3.029 19 H -0.286 1.286 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.139 3.861 23 C 0.111 3.889 24 C -0.097 4.097 25 C -0.207 4.207 26 Cl -0.036 7.036 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.158 0.842 31 H 0.154 0.846 32 H 0.416 0.584 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.036 0.964 39 H 0.011 0.989 40 H 0.250 0.750 41 H 0.016 0.984 42 H 0.006 0.994 43 H 0.073 0.927 44 H 0.104 0.896 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.367 2.269 -11.205 19.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.083 4.083 3 N -0.125 5.125 4 N -0.134 5.134 5 C -0.009 4.009 6 C 0.281 3.719 7 O -0.440 6.440 8 N -0.348 5.348 9 C 0.087 3.913 10 C -0.199 4.199 11 C -0.167 4.167 12 C 0.054 3.946 13 N -0.347 5.347 14 C -0.377 4.377 15 H 0.083 0.917 16 C -0.247 4.247 17 N -0.587 5.587 18 Si 0.799 3.201 19 H -0.213 1.213 20 H -0.214 1.214 21 H -0.201 1.201 22 C 0.013 3.987 23 C -0.018 4.018 24 C -0.155 4.155 25 C -0.245 4.245 26 Cl -0.007 7.007 27 H 0.116 0.884 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.175 0.825 31 H 0.171 0.829 32 H 0.253 0.747 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.126 0.874 37 H 0.102 0.898 38 H 0.054 0.946 39 H 0.029 0.971 40 H 0.059 0.941 41 H 0.034 0.966 42 H 0.024 0.976 43 H 0.092 0.908 44 H 0.123 0.877 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.494 3.111 -10.544 19.822 hybrid contribution 1.161 -1.750 0.461 2.150 sum -15.333 1.361 -10.083 18.402 Atomic orbital electron populations 1.20337 0.83910 1.04238 1.04533 1.22776 0.98716 0.88604 0.98192 1.77347 0.86446 1.22491 1.26231 1.47747 1.05129 1.03637 1.56869 1.21809 0.85959 0.98603 0.94566 1.21153 0.80374 0.78386 0.91947 1.90731 1.54336 1.51970 1.46924 1.45775 1.30085 1.50420 1.08568 1.21107 0.94822 0.93863 0.81544 1.21951 0.97388 1.00386 1.00179 1.23307 0.92420 0.97048 1.03875 1.21340 0.94578 0.85079 0.93597 1.44737 1.00797 1.25554 1.63625 1.19262 0.91304 1.06901 1.20276 0.91692 1.25502 0.98433 1.01544 0.99203 1.70089 1.13201 1.44055 1.31374 0.85190 0.78246 0.78213 0.78406 1.21281 1.21390 1.20087 1.21621 0.84463 0.96017 0.96581 1.21092 0.97034 0.85111 0.98531 1.20620 0.92271 0.98751 1.03843 1.20465 0.92330 0.87531 1.24189 1.98290 1.89656 1.14943 1.97852 0.88357 0.89422 0.90134 0.82458 0.82882 0.74667 0.92915 0.91444 0.90262 0.87408 0.89803 0.94572 0.97127 0.94065 0.96576 0.97556 0.90846 0.87746 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 10.31 71.24 0.73 -0.54 16 2 C 0.08 2.18 7.22 43.12 0.31 2.49 16 3 N -0.30 -8.68 12.57 -47.34 -0.60 -9.28 16 4 N -0.35 -9.28 3.10 -338.29 -1.05 -10.33 16 5 C 0.11 2.31 6.73 85.63 0.58 2.88 16 6 C 0.50 14.12 7.11 87.66 0.62 14.74 16 7 O -0.56 -21.43 13.38 -3.00 -0.04 -21.47 16 8 N -0.70 -18.40 5.15 -417.57 -2.15 -20.55 16 9 C 0.17 5.61 0.80 4.79 0.00 5.61 16 10 C -0.14 -4.08 8.41 71.98 0.61 -3.48 16 11 C -0.13 -4.02 6.11 32.16 0.20 -3.82 16 12 C 0.18 8.00 5.41 87.02 0.47 8.48 16 13 N -0.62 -31.59 3.40 -691.04 -2.35 -33.94 16 14 C -0.25 -14.09 10.24 84.03 0.86 -13.23 16 15 H 0.07 3.69 7.85 -2.91 -0.02 3.67 16 16 C -0.05 -2.94 5.40 84.86 0.46 -2.48 16 17 N -0.94 -53.88 10.68 21.65 0.23 -53.64 16 18 Si 0.97 45.29 29.56 68.60 2.03 47.32 16 19 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 20 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 C 0.14 6.13 6.16 86.73 0.53 6.66 16 23 C 0.11 2.91 6.94 41.41 0.29 3.20 16 24 C -0.10 -2.11 9.94 71.24 0.71 -1.40 16 25 C -0.21 -5.42 6.63 22.02 0.15 -5.27 16 26 Cl -0.04 -0.80 28.59 -2.72 -0.08 -0.87 16 27 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.09 1.40 8.01 -2.38 -0.02 1.38 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.16 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.15 2.15 7.04 -2.39 -0.02 2.14 16 32 H 0.42 8.19 8.48 -92.70 -0.79 7.41 16 33 H 0.05 1.78 6.20 -2.39 -0.01 1.77 16 34 H 0.07 1.90 8.12 -2.38 -0.02 1.88 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.11 2.53 8.06 -2.39 -0.02 2.51 16 37 H 0.08 2.58 8.05 -2.39 -0.02 2.56 16 38 H 0.04 1.85 6.94 -2.38 -0.02 1.84 16 39 H 0.01 0.51 8.07 -2.39 -0.02 0.49 16 40 H 0.25 13.90 8.31 -92.70 -0.77 13.13 16 41 H 0.02 0.75 7.80 -2.39 -0.02 0.73 16 42 H 0.01 0.31 6.68 -2.39 -0.02 0.30 16 43 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.10 1.91 7.91 -2.39 -0.02 1.89 16 45 H 0.09 1.65 7.08 -2.39 -0.02 1.63 16 Total: -1.00 -76.64 380.47 2.75 -73.89 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.23 Total: 15.03 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 6.52 Total: 13.84 kcal Atomic # 7 Polarization: -121.83 SS G_CDS: -5.91 Total: -127.74 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.04 Total: -21.47 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.87 kcal Total: -76.64 2.75 -73.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324670934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.014 kcal (2) G-P(sol) polarization free energy of solvation -76.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds