Wall clock time and date at job start Sat Apr 11 2020 06:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35470 * 126.43125 * 2 1 4 4 Cl 1.73601 * 127.23861 * 359.97438 * 3 2 1 5 5 C 1.41546 * 105.52138 * 180.26529 * 3 2 1 6 6 C 1.47663 * 126.46134 * 179.72305 * 5 3 2 7 7 O 1.21578 * 120.00202 * 359.97438 * 6 5 3 8 8 N 1.34777 * 119.99918 * 179.97438 * 6 5 3 9 9 C 1.47480 * 127.03345 * 0.02562 * 8 6 5 10 10 C 1.54003 * 107.08260 * 154.52131 * 9 8 6 11 11 C 1.54619 * 105.04577 * 1.30452 * 10 9 8 12 12 C 1.53003 * 110.73735 * 263.51536 * 11 10 9 13 13 C 1.52997 * 110.73914 * 140.19220 * 11 10 9 14 14 N 1.46497 * 109.47002 * 180.02562 * 13 11 10 15 15 C 1.36939 * 120.00434 * 179.97438 * 14 13 11 16 16 H 1.08006 * 119.99606 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00369 * 179.97438 * 15 14 13 18 18 N 1.31625 * 119.99748 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00018 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47325 * 89.99849 * 19 17 15 21 21 H 1.48497 * 109.47216 * 209.99841 * 19 17 15 22 22 H 1.48507 * 109.47276 * 329.99685 * 19 17 15 23 23 C 1.48119 * 127.03151 * 179.70901 * 8 6 5 24 24 N 1.31826 * 107.07537 * 359.73446 * 5 3 2 25 25 N 1.28470 * 110.13965 * 0.02562 * 24 5 3 26 26 C 1.46499 * 124.93557 * 180.02562 * 25 24 5 27 27 H 1.08996 * 109.47206 * 270.17061 * 1 2 3 28 28 H 1.09001 * 109.47518 * 30.17036 * 1 2 3 29 29 H 1.09003 * 109.46897 * 150.17394 * 1 2 3 30 30 H 1.09008 * 109.91309 * 273.87399 * 9 8 6 31 31 H 1.08997 * 109.91583 * 35.16032 * 9 8 6 32 32 H 1.08998 * 110.32871 * 120.19728 * 10 9 8 33 33 H 1.09005 * 110.32683 * 242.30869 * 10 9 8 34 34 H 1.08996 * 109.47356 * 60.00030 * 12 11 10 35 35 H 1.08998 * 109.46864 * 180.02562 * 12 11 10 36 36 H 1.09002 * 109.46840 * 299.99653 * 12 11 10 37 37 H 1.09006 * 109.47044 * 299.99728 * 13 11 10 38 38 H 1.08996 * 109.47329 * 59.99700 * 13 11 10 39 39 H 0.97001 * 120.00326 * 359.97438 * 14 13 11 40 40 H 0.97000 * 119.99676 * 179.97438 * 18 17 15 41 41 H 1.08999 * 110.66390 * 337.76690 * 23 8 6 42 42 H 1.09003 * 110.66050 * 100.88580 * 23 8 6 43 43 H 1.09002 * 109.47391 * 90.01833 * 26 25 24 44 44 H 1.09001 * 109.46813 * 330.01889 * 26 25 24 45 45 H 1.09004 * 109.47041 * 210.02016 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0899 0.0000 4 17 1.8234 2.7559 -0.0006 5 6 3.6337 0.5848 -0.0063 6 6 4.8773 1.3810 -0.0145 7 8 4.8215 2.5955 -0.0168 8 7 6.0741 0.7613 -0.0194 9 6 6.3217 -0.6925 -0.0181 10 6 7.7045 -0.9166 -0.6579 11 6 8.2292 0.5003 -0.9860 12 6 7.9427 0.8597 -2.4454 13 6 9.7252 0.6075 -0.6838 14 7 10.1924 1.9587 -1.0034 15 6 11.5069 2.2918 -0.8124 16 1 12.1991 1.5585 -0.4257 17 6 11.9497 3.5719 -1.1158 18 7 13.2130 3.8922 -0.9317 19 14 10.7524 4.8404 -1.7840 20 1 10.1417 5.5875 -0.6553 21 1 11.4770 5.7869 -2.6696 22 1 9.6864 4.1553 -2.5585 23 6 7.4099 1.4012 -0.0337 24 7 3.5456 -0.7305 -0.0038 25 7 2.3126 -1.0912 0.0029 26 6 1.8446 -2.4794 0.0080 27 1 -0.3633 0.0031 1.0276 28 1 -0.3634 0.8884 -0.5165 29 1 -0.3633 -0.8916 -0.5111 30 1 6.3208 -1.0684 1.0051 31 1 5.5551 -1.2002 -0.6035 32 1 8.3715 -1.4137 0.0464 33 1 7.6089 -1.5071 -1.5692 34 1 6.8674 0.8332 -2.6217 35 1 8.3209 1.8605 -2.6540 36 1 8.4362 0.1414 -3.1000 37 1 9.8978 0.4043 0.3732 38 1 10.2707 -0.1182 -1.2870 39 1 9.5707 2.6174 -1.3504 40 1 13.5225 4.7866 -1.1441 41 1 7.3460 2.4162 -0.4259 42 1 7.8475 1.4003 0.9646 43 1 1.7331 -2.8216 1.0369 44 1 2.5696 -3.1091 -0.5078 45 1 0.8828 -2.5405 -0.5014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324797264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:12 Heat of formation + Delta-G solvation = 62.845944 kcal Electronic energy + Delta-G solvation = -27796.663904 eV Core-core repulsion = 23877.762577 eV Total energy + Delta-G solvation = -3918.901327 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.10253 -39.98394 -37.91519 -36.67492 -34.93876 -34.00213 -32.94678 -32.53032 -30.74236 -29.32079 -28.23596 -27.62758 -26.51323 -25.68523 -23.70668 -22.50773 -21.66915 -21.14994 -19.22305 -18.95072 -17.65708 -17.28029 -16.99195 -16.55191 -15.77505 -15.46589 -15.08945 -14.53218 -14.37930 -14.14013 -13.98791 -13.82968 -13.65879 -13.44711 -13.30682 -13.06779 -12.95361 -12.78580 -12.42791 -12.32972 -12.15489 -12.05415 -11.89000 -11.65576 -11.35252 -11.24590 -10.84601 -10.81366 -10.52074 -10.43365 -10.23856 -10.03254 -9.91083 -9.52248 -9.50576 -9.01819 -8.84300 -8.53432 -7.17128 -5.71477 -3.06560 1.22011 1.52706 1.60394 2.35814 2.96950 3.29530 3.45087 3.49050 3.53288 3.92553 4.05846 4.31835 4.42726 4.51168 4.65787 4.71008 4.75609 4.78149 4.96050 4.98672 5.00273 5.21098 5.29670 5.33437 5.41938 5.54609 5.60930 5.65220 5.73855 5.79011 5.91382 6.00615 6.07364 6.08200 6.20223 6.25866 6.30903 6.50751 6.57608 6.69717 6.76389 7.37363 7.59917 8.04509 8.19225 8.47665 9.26845 9.99548 10.19115 11.46931 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018130 B = 0.002920 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.054495 B = 9585.974366 C =10805.074301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.024 3.976 3 C -0.104 4.104 4 Cl -0.007 7.007 5 C 0.011 3.989 6 C 0.613 3.387 7 O -0.517 6.517 8 N -0.606 5.606 9 C 0.105 3.895 10 C -0.123 4.123 11 C -0.084 4.084 12 C -0.131 4.131 13 C 0.174 3.826 14 N -0.755 5.755 15 C -0.242 4.242 16 H 0.090 0.910 17 C 0.005 3.995 18 N -0.935 5.935 19 Si 0.880 3.120 20 H -0.282 1.282 21 H -0.291 1.291 22 H -0.277 1.277 23 C 0.119 3.881 24 N -0.244 5.244 25 N -0.281 5.281 26 C 0.087 3.913 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.031 0.969 38 H 0.032 0.968 39 H 0.362 0.638 40 H 0.259 0.741 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.101 0.899 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.303 -16.803 1.829 34.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 C -0.142 4.142 4 Cl 0.021 6.979 5 C -0.150 4.150 6 C 0.398 3.602 7 O -0.391 6.391 8 N -0.339 5.339 9 C -0.018 4.018 10 C -0.162 4.162 11 C -0.085 4.085 12 C -0.188 4.188 13 C 0.047 3.953 14 N -0.401 5.401 15 C -0.372 4.372 16 H 0.108 0.892 17 C -0.191 4.191 18 N -0.583 5.583 19 Si 0.710 3.290 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.003 4.003 24 N -0.079 5.079 25 N -0.070 5.070 26 C -0.053 4.053 27 H 0.102 0.898 28 H 0.108 0.892 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.048 0.952 38 H 0.050 0.950 39 H 0.195 0.805 40 H 0.069 0.931 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.119 0.881 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -29.618 -17.069 1.897 34.237 hybrid contribution -1.211 1.648 -0.453 2.094 sum -30.828 -15.421 1.444 34.501 Atomic orbital electron populations 1.20406 0.85799 1.04305 1.03796 1.21099 0.95420 0.85758 1.07824 1.20519 0.91995 0.87869 1.13782 1.98364 1.90768 1.11652 1.97082 1.21806 0.94077 0.89387 1.09732 1.16329 0.80360 0.85994 0.77468 1.90867 1.85774 1.12200 1.50237 1.48575 1.05257 1.08391 1.71715 1.22220 0.97726 0.80816 1.01063 1.22591 0.95288 0.96954 1.01323 1.21862 0.96641 0.94181 0.95834 1.21723 1.00284 1.02476 0.94318 1.20601 0.88592 0.88242 0.97880 1.42769 1.08593 1.09027 1.79724 1.19039 0.84614 0.97113 1.36443 0.89209 1.24648 0.95781 0.97195 1.01433 1.69704 1.13745 1.20227 1.54621 0.86619 0.80880 0.82340 0.79125 1.20885 1.21734 1.20274 1.22568 0.79715 0.97918 1.00059 1.73741 1.01348 1.13725 1.19104 1.45358 1.02773 1.07388 1.51470 1.22234 1.01849 0.76395 1.04816 0.89780 0.89210 0.90635 0.91716 0.89570 0.90111 0.90570 0.93453 0.91875 0.92319 0.95160 0.95024 0.80458 0.93109 0.89617 0.90150 0.89303 0.88061 0.88456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.38 9.99 36.00 0.36 -0.02 16 2 C 0.02 0.21 6.94 -81.90 -0.57 -0.36 16 3 C -0.10 -1.30 6.79 -39.31 -0.27 -1.57 16 4 Cl -0.01 -0.09 27.93 -51.86 -1.45 -1.54 16 5 C 0.01 0.16 6.98 -82.76 -0.58 -0.42 16 6 C 0.61 10.21 7.90 -12.41 -0.10 10.11 16 7 O -0.52 -10.19 16.08 5.30 0.09 -10.11 16 8 N -0.61 -9.20 3.19 -171.16 -0.55 -9.74 16 9 C 0.10 1.25 6.27 -2.98 -0.02 1.23 16 10 C -0.12 -1.46 6.09 -25.36 -0.15 -1.61 16 11 C -0.08 -1.30 0.65 -152.82 -0.10 -1.40 16 12 C -0.13 -2.08 8.31 37.16 0.31 -1.77 16 13 C 0.17 3.31 5.11 -4.04 -0.02 3.28 16 14 N -0.75 -18.04 4.96 -59.91 -0.30 -18.34 16 15 C -0.24 -6.93 10.47 -15.06 -0.16 -7.08 16 16 H 0.09 2.73 8.06 -52.48 -0.42 2.30 16 17 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 18 N -0.93 -29.88 13.97 55.49 0.78 -29.10 16 19 Si 0.88 22.97 27.74 -169.99 -4.71 18.26 16 20 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 21 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 22 H -0.28 -6.84 6.52 56.52 0.37 -6.47 16 23 C 0.12 1.98 5.65 -2.32 -0.01 1.96 16 24 N -0.24 -2.77 9.19 33.42 0.31 -2.46 16 25 N -0.28 -2.31 3.72 -63.68 -0.24 -2.55 16 26 C 0.09 0.25 11.13 59.85 0.67 0.91 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 0.42 8.04 -51.93 -0.42 0.00 16 29 H 0.07 0.15 7.02 -51.93 -0.36 -0.21 16 30 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 31 H 0.09 0.97 6.20 -51.93 -0.32 0.65 16 32 H 0.08 0.88 7.85 -51.93 -0.41 0.47 16 33 H 0.08 0.81 7.87 -51.93 -0.41 0.40 16 34 H 0.05 0.72 8.07 -51.93 -0.42 0.30 16 35 H 0.06 1.16 6.69 -51.93 -0.35 0.81 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.58 8.10 -51.93 -0.42 0.16 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.36 8.63 4.07 -40.82 -0.17 8.47 16 40 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 41 H 0.09 1.62 7.75 -51.93 -0.40 1.22 16 42 H 0.08 1.34 8.01 -51.93 -0.42 0.92 16 43 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 44 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.10 0.03 6.97 -51.93 -0.36 -0.33 16 LS Contribution 377.12 15.07 5.68 5.68 Total: -1.00 -36.58 377.12 -7.71 -44.29 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.58 Total: 2.29 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -0.74 Total: 3.32 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: 0.00 Total: -62.20 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -4.71 Total: 18.26 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.45 Total: -1.54 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.58 -7.71 -44.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324797264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.138 kcal (2) G-P(sol) polarization free energy of solvation -36.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds