Wall clock time and date at job start Sat Apr 11 2020 06:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35465 * 126.43329 * 2 1 4 4 Cl 1.73605 * 127.23536 * 359.71176 * 3 2 1 5 5 C 1.41548 * 105.52378 * 179.73414 * 3 2 1 6 6 C 1.47663 * 126.45976 * 179.97438 * 5 3 2 7 7 O 1.21573 * 120.00057 * 0.02562 * 6 5 3 8 8 N 1.34772 * 119.99796 * 179.97438 * 6 5 3 9 9 C 1.46504 * 120.00163 * 179.97438 * 8 6 5 10 10 H 1.09011 * 110.66823 * 34.30422 * 9 8 6 11 11 C 1.54889 * 110.75876 * 271.07255 * 9 8 6 12 12 C 1.54465 * 104.09912 * 203.89293 * 11 9 8 13 13 C 1.53873 * 106.68546 * 23.33610 * 12 11 9 14 14 H 1.08996 * 110.03451 * 240.87026 * 13 12 11 15 15 C 1.53007 * 110.06864 * 119.47013 * 13 12 11 16 16 N 1.46499 * 109.47375 * 67.80770 * 15 13 12 17 17 C 1.36933 * 120.00088 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99756 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00021 * 180.02562 * 17 16 15 20 20 N 1.31613 * 120.00131 * 359.97438 * 19 17 16 21 21 Si 1.86810 * 119.99894 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46935 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47083 * 120.00057 * 21 19 17 24 24 H 1.48501 * 109.46824 * 239.99904 * 21 19 17 25 25 C 1.54262 * 106.60045 * 0.16305 * 13 12 11 26 26 N 1.31820 * 107.07493 * 359.97438 * 5 3 2 27 27 N 1.28473 * 110.14136 * 359.97438 * 26 5 3 28 28 C 1.46502 * 124.93317 * 180.02562 * 27 26 5 29 29 H 1.09004 * 109.46734 * 90.03279 * 1 2 3 30 30 H 1.09004 * 109.47174 * 210.02474 * 1 2 3 31 31 H 1.08989 * 109.47344 * 330.03029 * 1 2 3 32 32 H 0.97002 * 120.00378 * 0.02562 * 8 6 5 33 33 H 1.09003 * 110.48274 * 322.42018 * 11 9 8 34 34 H 1.09002 * 110.48845 * 85.06205 * 11 9 8 35 35 H 1.09011 * 109.85476 * 264.10068 * 12 11 9 36 36 H 1.09001 * 110.16093 * 142.75041 * 12 11 9 37 37 H 1.08996 * 109.46826 * 187.81072 * 15 13 12 38 38 H 1.09003 * 109.47137 * 307.80728 * 15 13 12 39 39 H 0.97001 * 119.99743 * 0.02562 * 16 15 13 40 40 H 0.97001 * 120.00093 * 180.02562 * 20 19 17 41 41 H 1.08996 * 110.48253 * 217.70855 * 25 13 12 42 42 H 1.09002 * 110.60036 * 95.12088 * 25 13 12 43 43 H 1.09008 * 109.46789 * 269.94189 * 28 27 26 44 44 H 1.08996 * 109.47310 * 29.94536 * 28 27 26 45 45 H 1.08999 * 109.46813 * 149.95152 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0899 0.0000 4 17 1.8234 2.7559 -0.0070 5 6 3.6338 0.5847 0.0063 6 6 4.8773 1.3809 0.0082 7 8 4.8216 2.5954 0.0047 8 7 6.0742 0.7613 0.0150 9 6 7.3080 1.5512 0.0163 10 1 7.1757 2.4705 0.5871 11 6 7.7610 1.8643 -1.4314 12 6 9.2800 2.1143 -1.3046 13 6 9.7417 1.3909 -0.0274 14 1 10.1592 2.1090 0.6783 15 6 10.7873 0.3291 -0.3742 16 7 12.0140 0.9839 -0.8353 17 6 13.0960 0.2296 -1.2034 18 1 13.0451 -0.8480 -1.1535 19 6 14.2585 0.8501 -1.6397 20 7 14.3207 2.1634 -1.7000 21 14 15.7343 -0.1789 -2.1426 22 1 15.4101 -1.6195 -1.9847 23 1 16.0721 0.1004 -3.5614 24 1 16.8939 0.1644 -1.2808 25 6 8.4899 0.7222 0.5773 26 7 3.5456 -0.7305 0.0102 27 7 2.3126 -1.0913 0.0075 28 6 1.8446 -2.4795 0.0109 29 1 -0.3633 -0.0006 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3633 0.8901 0.5133 32 1 6.1187 -0.2077 0.0182 33 1 7.5691 1.0124 -2.0837 34 1 7.2547 2.7542 -1.8055 35 1 9.4734 3.1836 -1.2187 36 1 9.8010 1.7094 -2.1722 37 1 11.0051 -0.2689 0.5106 38 1 10.4016 -0.3166 -1.1632 39 1 12.0601 1.9518 -0.8790 40 1 15.1329 2.5970 -2.0053 41 1 8.5144 0.7806 1.6654 42 1 8.4154 -0.3159 0.2534 43 1 1.7310 -2.8271 -1.0160 44 1 2.5707 -3.1064 0.5285 45 1 0.8840 -2.5378 0.5226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332305868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:29 Heat of formation + Delta-G solvation = 35.531076 kcal Electronic energy + Delta-G solvation = -26485.760431 eV Core-core repulsion = 22565.674642 eV Total energy + Delta-G solvation = -3920.085789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.16548 -39.74344 -37.90819 -36.75449 -34.77185 -34.12452 -33.26177 -32.95193 -31.00611 -28.67746 -28.47249 -27.76147 -26.97895 -24.45802 -23.35108 -22.15097 -21.48069 -20.54805 -20.18255 -19.01550 -17.72238 -17.05257 -17.01676 -16.87545 -16.08534 -15.46331 -15.22920 -14.76423 -14.56837 -14.30629 -13.99476 -13.88063 -13.50203 -13.34451 -13.28233 -13.19119 -12.97410 -12.84685 -12.71652 -12.12163 -11.96868 -11.78556 -11.74926 -11.37882 -11.04814 -10.93008 -10.84435 -10.70671 -10.44307 -10.30097 -10.10216 -10.01077 -9.80927 -9.62292 -9.60675 -9.09784 -8.95211 -8.82058 -6.85509 -5.71479 -2.99541 1.14476 1.45380 1.53835 2.30232 3.04432 3.20686 3.46232 3.51506 3.54000 3.89088 4.00708 4.34187 4.42565 4.49303 4.63024 4.74733 4.76923 4.89382 4.91897 4.97431 5.13644 5.16869 5.24804 5.56041 5.59690 5.63239 5.69969 5.73531 5.77602 5.92654 6.01484 6.13859 6.21028 6.25019 6.35756 6.41476 6.52785 6.65249 6.75440 6.90192 7.01913 7.24004 7.54038 7.74881 8.13983 8.47779 9.58794 10.18472 10.53202 11.51548 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.024410 B = 0.001914 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.787447 B =14629.055151 C =15474.765586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.024 3.976 3 C -0.104 4.104 4 Cl -0.007 7.007 5 C 0.003 3.997 6 C 0.599 3.401 7 O -0.516 6.516 8 N -0.707 5.707 9 C 0.139 3.861 10 H 0.097 0.903 11 C -0.132 4.132 12 C -0.114 4.114 13 C -0.095 4.095 14 H 0.075 0.925 15 C 0.161 3.839 16 N -0.732 5.732 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.120 4.120 26 N -0.247 5.247 27 N -0.278 5.278 28 C 0.086 3.914 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.405 0.595 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.016 0.984 38 H 0.019 0.981 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.102 0.898 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.963 -7.888 5.025 35.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C -0.141 4.141 4 Cl 0.022 6.978 5 C -0.158 4.158 6 C 0.382 3.618 7 O -0.389 6.389 8 N -0.358 5.358 9 C 0.035 3.965 10 H 0.115 0.885 11 C -0.170 4.170 12 C -0.153 4.153 13 C -0.114 4.114 14 H 0.093 0.907 15 C 0.033 3.967 16 N -0.376 5.376 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.582 5.582 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.158 4.158 26 N -0.083 5.083 27 N -0.067 5.067 28 C -0.054 4.054 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.240 0.760 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.034 0.966 38 H 0.037 0.963 39 H 0.218 0.782 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.108 0.892 44 H 0.120 0.880 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -33.312 -8.107 5.001 34.647 hybrid contribution 0.427 -0.017 -0.359 0.558 sum -32.885 -8.123 4.642 34.190 Atomic orbital electron populations 1.20416 0.85732 1.04349 1.03868 1.21125 0.95488 0.85744 1.07757 1.20525 0.92034 0.87854 1.13722 1.98364 1.90786 1.11616 1.97080 1.21900 0.94385 0.89433 1.10078 1.16762 0.81534 0.86493 0.76976 1.90846 1.86426 1.12380 1.49293 1.45878 1.05038 1.10674 1.74174 1.22135 0.81885 0.95055 0.97418 0.88474 1.22774 0.96654 1.01656 0.95950 1.22159 0.93725 1.00541 0.98831 1.21863 0.94528 0.98112 0.96927 0.90684 1.20739 0.86684 0.93190 0.96090 1.42382 1.10015 1.06244 1.79002 1.19280 0.91244 0.90613 1.35683 0.91229 1.24741 0.98220 0.95638 1.02591 1.69670 1.27736 1.07069 1.53723 0.86128 0.83115 0.79174 0.77852 1.20620 1.21924 1.21931 1.22598 0.93482 0.99440 1.00312 1.73621 1.01908 1.13740 1.18986 1.45282 1.02598 1.07473 1.51330 1.22262 1.01902 0.76291 1.04936 0.89715 0.90595 0.89171 0.76024 0.91612 0.91474 0.91897 0.90347 0.96579 0.96338 0.78201 0.93616 0.91187 0.90907 0.89221 0.87968 0.88368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.32 9.99 36.01 0.36 0.04 16 2 C 0.02 0.19 6.94 -81.90 -0.57 -0.38 16 3 C -0.10 -1.16 6.79 -39.31 -0.27 -1.43 16 4 Cl -0.01 -0.08 27.92 -51.86 -1.45 -1.53 16 5 C 0.00 0.04 7.13 -82.76 -0.59 -0.55 16 6 C 0.60 8.40 7.82 -12.41 -0.10 8.30 16 7 O -0.52 -8.64 15.56 5.30 0.08 -8.56 16 8 N -0.71 -8.69 5.19 -52.87 -0.27 -8.97 16 9 C 0.14 1.84 3.21 -65.94 -0.21 1.63 16 10 H 0.10 1.39 7.62 -51.92 -0.40 0.99 16 11 C -0.13 -1.87 6.53 -24.97 -0.16 -2.03 16 12 C -0.11 -1.86 6.19 -25.51 -0.16 -2.02 16 13 C -0.09 -1.56 2.96 -89.50 -0.26 -1.82 16 14 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 15 C 0.16 3.26 5.28 -4.04 -0.02 3.24 16 16 N -0.73 -18.85 5.39 -59.91 -0.32 -19.17 16 17 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 18 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 19 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 20 N -0.93 -28.71 13.06 55.49 0.72 -27.99 16 21 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 25 C -0.12 -1.57 5.98 -25.08 -0.15 -1.72 16 26 N -0.25 -2.58 11.66 33.42 0.39 -2.19 16 27 N -0.28 -2.09 3.72 -63.68 -0.24 -2.33 16 28 C 0.09 0.21 11.12 59.85 0.67 0.87 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.10 7.02 -51.93 -0.36 -0.26 16 31 H 0.09 0.35 8.04 -51.94 -0.42 -0.07 16 32 H 0.40 4.30 8.26 -40.82 -0.34 3.96 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 36 H 0.08 1.45 7.62 -51.93 -0.40 1.05 16 37 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.38 10.40 7.55 -40.82 -0.31 10.09 16 40 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.90 7.73 -51.93 -0.40 0.49 16 43 H 0.09 0.11 8.14 -51.92 -0.42 -0.31 16 44 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.10 -0.02 6.97 -51.93 -0.36 -0.38 16 LS Contribution 387.17 15.07 5.83 5.83 Total: -1.00 -35.43 387.17 -8.74 -44.17 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -6.76 Total: 6.32 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -1.71 Total: -3.33 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: 0.28 Total: -60.65 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.08 Total: -8.56 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.45 Total: -1.53 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.43 -8.74 -44.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332305868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.703 kcal (2) G-P(sol) polarization free energy of solvation -35.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds