Wall clock time and date at job start Sat Apr 11 2020 06:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35465 * 126.43329 * 2 1 4 4 Cl 1.73605 * 127.23536 * 359.71176 * 3 2 1 5 5 C 1.41548 * 105.52378 * 179.73414 * 3 2 1 6 6 C 1.47663 * 126.45976 * 179.97438 * 5 3 2 7 7 O 1.21573 * 120.00057 * 0.02562 * 6 5 3 8 8 N 1.34772 * 119.99796 * 179.97438 * 6 5 3 9 9 C 1.46504 * 120.00163 * 179.97438 * 8 6 5 10 10 H 1.09011 * 110.66823 * 34.30422 * 9 8 6 11 11 C 1.54889 * 110.75876 * 271.07255 * 9 8 6 12 12 C 1.54465 * 104.09912 * 203.89293 * 11 9 8 13 13 C 1.53873 * 106.68546 * 23.33610 * 12 11 9 14 14 H 1.08996 * 110.03451 * 240.87026 * 13 12 11 15 15 C 1.53007 * 110.06864 * 119.47013 * 13 12 11 16 16 N 1.46499 * 109.47375 * 67.80770 * 15 13 12 17 17 C 1.36933 * 120.00088 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99756 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00021 * 180.02562 * 17 16 15 20 20 N 1.31613 * 120.00131 * 359.97438 * 19 17 16 21 21 Si 1.86810 * 119.99894 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46935 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47083 * 120.00057 * 21 19 17 24 24 H 1.48501 * 109.46824 * 239.99904 * 21 19 17 25 25 C 1.54262 * 106.60045 * 0.16305 * 13 12 11 26 26 N 1.31820 * 107.07493 * 359.97438 * 5 3 2 27 27 N 1.28473 * 110.14136 * 359.97438 * 26 5 3 28 28 C 1.46502 * 124.93317 * 180.02562 * 27 26 5 29 29 H 1.09004 * 109.46734 * 90.03279 * 1 2 3 30 30 H 1.09004 * 109.47174 * 210.02474 * 1 2 3 31 31 H 1.08989 * 109.47344 * 330.03029 * 1 2 3 32 32 H 0.97002 * 120.00378 * 0.02562 * 8 6 5 33 33 H 1.09003 * 110.48274 * 322.42018 * 11 9 8 34 34 H 1.09002 * 110.48845 * 85.06205 * 11 9 8 35 35 H 1.09011 * 109.85476 * 264.10068 * 12 11 9 36 36 H 1.09001 * 110.16093 * 142.75041 * 12 11 9 37 37 H 1.08996 * 109.46826 * 187.81072 * 15 13 12 38 38 H 1.09003 * 109.47137 * 307.80728 * 15 13 12 39 39 H 0.97001 * 119.99743 * 0.02562 * 16 15 13 40 40 H 0.97001 * 120.00093 * 180.02562 * 20 19 17 41 41 H 1.08996 * 110.48253 * 217.70855 * 25 13 12 42 42 H 1.09002 * 110.60036 * 95.12088 * 25 13 12 43 43 H 1.09008 * 109.46789 * 269.94189 * 28 27 26 44 44 H 1.08996 * 109.47310 * 29.94536 * 28 27 26 45 45 H 1.08999 * 109.46813 * 149.95152 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0899 0.0000 4 17 1.8234 2.7559 -0.0070 5 6 3.6338 0.5847 0.0063 6 6 4.8773 1.3809 0.0082 7 8 4.8216 2.5954 0.0047 8 7 6.0742 0.7613 0.0150 9 6 7.3080 1.5512 0.0163 10 1 7.1757 2.4705 0.5871 11 6 7.7610 1.8643 -1.4314 12 6 9.2800 2.1143 -1.3046 13 6 9.7417 1.3909 -0.0274 14 1 10.1592 2.1090 0.6783 15 6 10.7873 0.3291 -0.3742 16 7 12.0140 0.9839 -0.8353 17 6 13.0960 0.2296 -1.2034 18 1 13.0451 -0.8480 -1.1535 19 6 14.2585 0.8501 -1.6397 20 7 14.3207 2.1634 -1.7000 21 14 15.7343 -0.1789 -2.1426 22 1 15.4101 -1.6195 -1.9847 23 1 16.0721 0.1004 -3.5614 24 1 16.8939 0.1644 -1.2808 25 6 8.4899 0.7222 0.5773 26 7 3.5456 -0.7305 0.0102 27 7 2.3126 -1.0913 0.0075 28 6 1.8446 -2.4795 0.0109 29 1 -0.3633 -0.0006 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3633 0.8901 0.5133 32 1 6.1187 -0.2077 0.0182 33 1 7.5691 1.0124 -2.0837 34 1 7.2547 2.7542 -1.8055 35 1 9.4734 3.1836 -1.2187 36 1 9.8010 1.7094 -2.1722 37 1 11.0051 -0.2689 0.5106 38 1 10.4016 -0.3166 -1.1632 39 1 12.0601 1.9518 -0.8790 40 1 15.1329 2.5970 -2.0053 41 1 8.5144 0.7806 1.6654 42 1 8.4154 -0.3159 0.2534 43 1 1.7310 -2.8271 -1.0160 44 1 2.5707 -3.1064 0.5285 45 1 0.8840 -2.5378 0.5226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332305868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:29 Heat of formation + Delta-G solvation = 11.189057 kcal Electronic energy + Delta-G solvation = -26486.815980 eV Core-core repulsion = 22565.674642 eV Total energy + Delta-G solvation = -3921.141338 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.82869 -40.84865 -39.17808 -37.53950 -36.44151 -35.00603 -34.43106 -33.50128 -32.87163 -30.13413 -29.46065 -28.37321 -27.76383 -26.16650 -24.28962 -23.92642 -22.19234 -21.68450 -21.10831 -20.36713 -19.07624 -18.43186 -17.73835 -17.60044 -17.23227 -16.74984 -16.51324 -15.85214 -15.74904 -15.51453 -15.15815 -15.00769 -14.53881 -14.46022 -14.24619 -14.14547 -13.71312 -13.53606 -13.39680 -13.29342 -13.09633 -12.90878 -12.82892 -12.81565 -12.53646 -12.45416 -12.11943 -12.08827 -11.86057 -11.76657 -11.70555 -11.51791 -11.27518 -11.11345 -10.91701 -10.31692 -10.01747 -9.76278 -8.97171 -7.93721 -5.22160 0.34870 0.75795 0.92937 1.47320 1.48497 1.58592 1.65647 2.09973 2.21754 2.57090 3.25942 3.39713 3.50982 3.57532 3.66303 3.79323 3.88484 4.09163 4.21129 4.32279 4.36700 4.37464 4.46952 4.50807 4.59333 4.64520 4.67941 4.71455 4.78099 4.79900 4.85658 4.91960 5.00639 5.07796 5.13532 5.17517 5.25280 5.40779 5.47476 5.52680 5.57651 5.65924 6.28887 6.39010 6.70522 7.13152 7.34832 8.12609 8.35457 9.30208 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.024410 B = 0.001914 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.787447 B =14629.055151 C =15474.765586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.041 3.959 3 C -0.136 4.136 4 Cl -0.021 7.021 5 C -0.028 4.028 6 C 0.596 3.404 7 O -0.553 6.553 8 N -0.696 5.696 9 C 0.148 3.852 10 H 0.087 0.913 11 C -0.122 4.122 12 C -0.110 4.110 13 C -0.088 4.088 14 H 0.067 0.933 15 C 0.160 3.840 16 N -0.745 5.745 17 C -0.243 4.243 18 H 0.076 0.924 19 C -0.080 4.080 20 N -0.970 5.970 21 Si 0.974 3.026 22 H -0.265 1.265 23 H -0.294 1.294 24 H -0.293 1.293 25 C -0.106 4.106 26 N -0.253 5.253 27 N -0.268 5.268 28 C 0.071 3.929 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.415 0.585 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.374 0.626 40 H 0.250 0.750 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.129 -10.792 5.492 38.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.174 4.174 4 Cl 0.008 6.992 5 C -0.187 4.187 6 C 0.381 3.619 7 O -0.429 6.429 8 N -0.347 5.347 9 C 0.043 3.957 10 H 0.105 0.895 11 C -0.161 4.161 12 C -0.148 4.148 13 C -0.107 4.107 14 H 0.086 0.914 15 C 0.034 3.966 16 N -0.388 5.388 17 C -0.375 4.375 18 H 0.094 0.906 19 C -0.272 4.272 20 N -0.622 5.622 21 Si 0.804 3.196 22 H -0.189 1.189 23 H -0.221 1.221 24 H -0.221 1.221 25 C -0.144 4.144 26 N -0.090 5.090 27 N -0.057 5.057 28 C -0.066 4.066 29 H 0.117 0.883 30 H 0.127 0.873 31 H 0.107 0.893 32 H 0.251 0.749 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.205 0.795 40 H 0.059 0.941 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -35.508 -11.086 5.483 37.601 hybrid contribution 0.975 0.772 -0.501 1.341 sum -34.533 -10.315 4.981 36.383 Atomic orbital electron populations 1.20630 0.82611 1.05914 1.05243 1.21682 0.97106 0.84748 1.05002 1.20783 0.92392 0.88141 1.16079 1.98345 1.90756 1.12860 1.97270 1.21687 0.94067 0.90315 1.12677 1.17058 0.82371 0.86291 0.76159 1.90815 1.87049 1.13947 1.51056 1.45731 1.04324 1.11029 1.73651 1.21916 0.82423 0.94962 0.96383 0.89474 1.22671 0.94918 1.01632 0.96880 1.22055 0.94948 1.00039 0.97801 1.21751 0.94925 0.97133 0.96911 0.91402 1.20902 0.85705 0.94079 0.95932 1.42607 1.11250 1.05820 1.79122 1.19696 0.92052 0.91183 1.34532 0.90587 1.25599 1.01250 0.96806 1.03514 1.69832 1.28287 1.08769 1.55268 0.85053 0.79280 0.78381 0.76925 1.18916 1.22118 1.22058 1.22489 0.91190 0.99681 1.01052 1.73561 1.03603 1.12678 1.19173 1.45849 1.01704 1.09156 1.49039 1.22787 1.03548 0.73579 1.06680 0.88261 0.87320 0.89329 0.74852 0.91072 0.92053 0.92430 0.92809 0.96037 0.96036 0.79450 0.94074 0.89566 0.89438 0.87548 0.87354 0.85060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.36 9.99 71.24 0.71 0.35 16 2 C 0.04 0.55 6.94 41.33 0.29 0.84 16 3 C -0.14 -2.97 6.79 22.44 0.15 -2.82 16 4 Cl -0.02 -0.48 27.92 -2.72 -0.08 -0.56 16 5 C -0.03 -0.68 7.13 42.45 0.30 -0.38 16 6 C 0.60 16.84 7.82 86.73 0.68 17.52 16 7 O -0.55 -19.07 15.56 -3.95 -0.06 -19.13 16 8 N -0.70 -16.67 5.19 -439.46 -2.28 -18.95 16 9 C 0.15 3.83 3.21 46.28 0.15 3.97 16 10 H 0.09 2.50 7.62 -2.38 -0.02 2.48 16 11 C -0.12 -3.47 6.53 31.74 0.21 -3.27 16 12 C -0.11 -3.65 6.19 31.39 0.19 -3.45 16 13 C -0.09 -2.86 2.96 -10.07 -0.03 -2.89 16 14 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 15 C 0.16 6.43 5.28 86.38 0.46 6.89 16 16 N -0.75 -38.78 5.39 -343.45 -1.85 -40.63 16 17 C -0.24 -13.84 9.99 84.03 0.84 -13.00 16 18 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 19 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 20 N -0.97 -60.82 13.06 21.65 0.28 -60.54 16 21 Si 0.97 46.98 29.55 68.60 2.03 49.00 16 22 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 24 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 25 C -0.11 -2.60 5.98 31.67 0.19 -2.41 16 26 N -0.25 -4.90 11.66 -48.18 -0.56 -5.47 16 27 N -0.27 -3.33 3.72 -355.38 -1.32 -4.65 16 28 C 0.07 0.07 11.12 127.77 1.42 1.50 16 29 H 0.10 0.21 8.14 -2.38 -0.02 0.19 16 30 H 0.11 -0.24 7.02 -2.38 -0.02 -0.26 16 31 H 0.09 0.47 8.04 -2.39 -0.02 0.45 16 32 H 0.41 8.24 8.26 -92.71 -0.77 7.48 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.05 2.04 7.62 -2.39 -0.02 2.02 16 37 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.37 20.76 7.55 -92.71 -0.70 20.06 16 40 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 41 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 42 H 0.09 1.94 7.73 -2.39 -0.02 1.92 16 43 H 0.11 -0.16 8.14 -2.38 -0.02 -0.18 16 44 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 45 H 0.13 -0.71 6.97 -2.39 -0.02 -0.73 16 Total: -1.00 -78.61 387.17 1.74 -76.87 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: -0.44 Total: 25.42 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 6.03 Total: -1.37 kcal Atomic # 7 Polarization: -124.51 SS G_CDS: -5.73 Total: -130.24 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.06 Total: -19.13 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.00 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -0.08 Total: -0.56 kcal Total: -78.61 1.74 -76.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332305868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.057 kcal (2) G-P(sol) polarization free energy of solvation -78.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds