Wall clock time and date at job start Sat Apr 11 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30009 * 127.34007 * 2 1 4 4 O 1.20651 * 112.30746 * 179.97438 * 3 2 1 5 5 C 1.33492 * 113.15334 * 359.74847 * 4 3 2 6 6 C 1.37354 * 106.34313 * 0.39403 * 5 4 3 7 7 C 1.47401 * 128.56483 * 179.90693 * 6 5 4 8 8 O 1.21609 * 120.00125 * 214.96741 * 7 6 5 9 9 N 1.34773 * 120.00172 * 34.97623 * 7 6 5 10 10 C 1.46510 * 119.99560 * 355.61957 * 9 7 6 11 11 C 1.46499 * 120.00448 * 175.62581 * 9 7 6 12 12 C 1.52999 * 109.46921 * 89.99350 * 11 9 7 13 13 H 1.08996 * 109.47231 * 60.00627 * 12 11 9 14 14 O 1.42898 * 109.47457 * 300.00204 * 12 11 9 15 15 C 1.53002 * 109.46868 * 180.02562 * 12 11 9 16 16 N 1.46898 * 109.47095 * 185.00079 * 15 12 11 17 17 C 1.46907 * 111.00045 * 179.97438 * 16 15 12 18 18 C 1.50701 * 109.47132 * 179.97438 * 17 16 15 19 19 O 1.21296 * 119.99748 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00128 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00474 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99391 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00376 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99799 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 119.99932 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47209 * 90.00283 * 25 23 21 27 27 H 1.48501 * 109.47018 * 209.99761 * 25 23 21 28 28 H 1.48498 * 109.47353 * 329.99906 * 25 23 21 29 29 H 1.08997 * 109.47513 * 270.00787 * 1 2 3 30 30 H 1.09007 * 109.47005 * 30.00976 * 1 2 3 31 31 H 1.09005 * 109.46897 * 150.00326 * 1 2 3 32 32 H 1.08003 * 126.82817 * 180.30068 * 5 4 3 33 33 H 1.08997 * 109.47245 * 275.36310 * 10 9 7 34 34 H 1.08999 * 109.47205 * 35.36596 * 10 9 7 35 35 H 1.09000 * 109.46592 * 155.36827 * 10 9 7 36 36 H 1.08996 * 109.47346 * 209.99209 * 11 9 7 37 37 H 1.08996 * 109.46657 * 329.99625 * 11 9 7 38 38 H 0.96707 * 114.00073 * 300.00167 * 14 12 11 39 39 H 1.09003 * 109.47240 * 304.99926 * 15 12 11 40 40 H 1.08998 * 109.47493 * 65.00220 * 15 12 11 41 41 H 1.00904 * 111.00141 * 303.95219 * 16 15 12 42 42 H 1.09000 * 109.47166 * 300.00251 * 17 16 15 43 43 H 1.09001 * 109.46949 * 60.00175 * 17 16 15 44 44 H 0.97001 * 119.99561 * 0.02562 * 20 18 17 45 45 H 0.96997 * 119.99870 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0336 0.0000 4 8 3.4607 0.7207 0.0005 5 6 3.6493 -0.6008 0.0063 6 6 2.3991 -1.1697 0.0008 7 6 2.0400 -2.5993 0.0018 8 8 1.0581 -2.9800 -0.6062 9 7 2.7998 -3.4845 0.6768 10 6 4.0347 -3.0421 1.3293 11 6 2.3910 -4.8889 0.7579 12 6 2.9877 -5.6625 -0.4195 13 1 4.0752 -5.5980 -0.3829 14 8 2.5182 -5.0998 -1.6463 15 6 2.5602 -7.1292 -0.3352 16 7 3.2285 -7.8957 -1.3953 17 6 2.8414 -9.3120 -1.3447 18 6 3.5446 -10.0645 -2.4448 19 8 4.2948 -9.4787 -3.1967 20 7 3.3408 -11.3885 -2.5926 21 6 3.9800 -12.0731 -3.5937 22 1 4.6473 -11.5513 -4.2637 23 6 3.7694 -13.4380 -3.7464 24 7 2.9570 -14.0726 -2.9314 25 14 4.6410 -14.3707 -5.1100 26 1 5.9427 -14.8798 -4.6079 27 1 3.7978 -15.5128 -5.5458 28 1 4.8755 -13.4613 -6.2603 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5140 31 1 -0.3633 -0.8901 -0.5138 32 1 4.5966 -1.1196 0.0124 33 1 4.8494 -3.0449 0.6052 34 1 3.8985 -2.0334 1.7191 35 1 4.2750 -3.7191 2.1491 36 1 2.7492 -5.3182 1.6935 37 1 1.3035 -4.9534 0.7212 38 1 1.5568 -5.1234 -1.7473 39 1 2.8402 -7.5339 0.6374 40 1 1.4799 -7.2006 -0.4611 41 1 3.0364 -7.5003 -2.3035 42 1 3.1236 -9.7315 -0.3791 43 1 1.7630 -9.3989 -1.4774 44 1 2.7411 -11.8570 -1.9910 45 1 2.8097 -15.0254 -3.0382 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332565557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:38 Heat of formation + Delta-G solvation = -49.619956 kcal Electronic energy + Delta-G solvation = -28850.023335 eV Core-core repulsion = 24485.535956 eV Total energy + Delta-G solvation = -4364.487379 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.33817 -40.32704 -38.42377 -37.67293 -35.83345 -34.92267 -34.67801 -33.76165 -32.67982 -31.23377 -30.54314 -29.14996 -27.88821 -27.12031 -25.48196 -24.21978 -23.07789 -21.77264 -21.67419 -20.28557 -19.24708 -18.23533 -18.00421 -17.89240 -17.26307 -17.11630 -16.42133 -16.14786 -15.89774 -15.45094 -14.96189 -14.71811 -14.47253 -14.36435 -14.10921 -13.76046 -13.73202 -13.62737 -13.39840 -13.26327 -13.09224 -12.91206 -12.78953 -12.56634 -12.10285 -11.77979 -11.69672 -11.55937 -11.50874 -11.19727 -11.02421 -10.57115 -10.38750 -10.32663 -10.30158 -10.20616 -10.08809 -9.50232 -9.02420 -8.44753 -8.07032 -7.95236 -6.41154 -3.81822 0.69449 1.38612 2.26894 2.58060 2.75204 3.18566 3.27057 3.33300 3.60467 3.85914 3.91490 4.02222 4.14611 4.24510 4.39247 4.48917 4.53419 4.76176 4.79829 4.90464 4.97307 4.98989 5.04655 5.10334 5.13597 5.16751 5.19306 5.25673 5.29819 5.36164 5.57654 5.70587 5.76680 5.94089 5.95601 5.97789 6.26569 6.83648 7.18496 7.55997 7.62115 7.68726 7.73265 7.78531 8.07207 8.62180 9.18742 9.55001 10.06769 10.76649 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031096 B = 0.001648 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.210107 B =16990.924703 C =17071.376334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.066 3.934 3 N -0.358 5.358 4 O 0.097 5.903 5 C -0.010 4.010 6 C -0.248 4.248 7 C 0.603 3.397 8 O -0.520 6.520 9 N -0.602 5.602 10 C 0.065 3.935 11 C 0.086 3.914 12 C 0.094 3.906 13 H 0.108 0.892 14 O -0.549 6.549 15 C 0.030 3.970 16 N -0.664 5.664 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.581 6.581 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.228 0.772 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.375 0.625 39 H 0.079 0.921 40 H 0.031 0.969 41 H 0.357 0.643 42 H 0.085 0.915 43 H 0.043 0.957 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.128 25.136 14.531 29.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 N -0.066 5.066 4 O 0.037 5.963 5 C -0.092 4.092 6 C -0.255 4.255 7 C 0.390 3.610 8 O -0.396 6.396 9 N -0.335 5.335 10 C -0.078 4.078 11 C -0.037 4.037 12 C 0.033 3.967 13 H 0.126 0.874 14 O -0.354 6.354 15 C -0.101 4.101 16 N -0.298 5.298 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.465 6.465 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.244 0.756 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.223 0.777 39 H 0.097 0.903 40 H 0.049 0.951 41 H 0.177 0.823 42 H 0.103 0.897 43 H 0.060 0.940 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.170 26.435 13.960 29.973 hybrid contribution -1.271 -1.932 -0.345 2.339 sum -3.441 24.503 13.614 28.242 Atomic orbital electron populations 1.20297 0.84941 1.04897 1.03722 1.24848 0.98905 0.86239 0.99670 1.73676 0.89276 1.23586 1.20046 1.84583 1.21520 1.23102 1.67105 1.26676 1.00422 0.83830 0.98297 1.22274 0.93053 0.95585 1.14606 1.16752 0.82669 0.83009 0.78538 1.90761 1.27623 1.79262 1.41928 1.47450 1.24307 1.08607 1.53107 1.22135 0.86031 1.01507 0.98089 1.22303 1.01731 0.79849 0.99803 1.22368 1.00266 0.90115 0.83963 0.87400 1.86613 1.27478 1.83326 1.38031 1.22583 0.96248 0.93939 0.97345 1.60014 1.60526 1.01021 1.08224 1.21684 0.97418 0.89320 0.99806 1.19806 0.86713 0.83169 0.87729 1.90535 1.40521 1.68143 1.47343 1.41858 1.41727 1.06396 1.30120 1.19713 1.23704 0.90779 1.08666 0.87915 1.25262 0.97284 0.96782 0.98658 1.69611 1.36432 1.10419 1.37922 0.85848 0.78830 0.78832 0.80720 1.20400 1.20948 1.19421 0.89909 0.90065 0.88552 0.75593 0.91831 0.90892 0.89949 0.89037 0.89314 0.77663 0.90282 0.95116 0.82275 0.89679 0.93952 0.77483 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.49 36.00 0.38 -0.23 16 2 C 0.07 0.62 7.59 -79.77 -0.61 0.02 16 3 N -0.36 -3.55 12.01 34.78 0.42 -3.13 16 4 O 0.10 0.78 11.06 18.65 0.21 0.99 16 5 C -0.01 -0.06 10.09 30.41 0.31 0.24 16 6 C -0.25 -2.18 5.74 -102.89 -0.59 -2.77 16 7 C 0.60 6.01 7.22 -12.53 -0.09 5.92 16 8 O -0.52 -6.62 14.43 -7.95 -0.11 -6.74 16 9 N -0.60 -4.52 2.83 -182.86 -0.52 -5.04 16 10 C 0.07 0.26 9.09 59.85 0.54 0.81 16 11 C 0.09 0.64 5.18 -4.04 -0.02 0.62 16 12 C 0.09 0.95 3.48 -26.73 -0.09 0.85 16 13 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 14 O -0.55 -6.94 11.57 -48.45 -0.56 -7.50 16 15 C 0.03 0.33 5.36 -3.82 -0.02 0.31 16 16 N -0.66 -10.77 6.13 -115.05 -0.70 -11.48 16 17 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 18 C 0.44 10.55 7.82 -10.99 -0.09 10.47 16 19 O -0.58 -16.15 15.78 5.54 0.09 -16.07 16 20 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 21 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 25 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.53 8.14 -51.92 -0.42 0.10 16 31 H 0.10 0.80 7.33 -51.93 -0.38 0.42 16 32 H 0.23 0.49 6.36 -52.48 -0.33 0.15 16 33 H 0.06 0.20 7.46 -51.93 -0.39 -0.18 16 34 H 0.07 0.22 5.84 -51.93 -0.30 -0.08 16 35 H 0.08 0.21 7.83 -51.93 -0.41 -0.19 16 36 H 0.09 0.46 7.86 -51.93 -0.41 0.05 16 37 H 0.09 0.72 7.48 -51.93 -0.39 0.33 16 38 H 0.38 4.29 8.32 45.56 0.38 4.67 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.36 6.37 7.99 -39.29 -0.31 6.06 16 42 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 45 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 383.26 15.07 5.78 5.78 Total: -1.00 -36.12 383.26 -5.65 -41.77 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -5.34 Total: 14.62 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -0.55 Total: 9.02 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -0.14 Total: -58.04 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.38 Total: -29.32 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.12 -5.65 -41.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332565557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.848 kcal (2) G-P(sol) polarization free energy of solvation -36.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds