Wall clock time and date at job start Sat Apr 11 2020 06:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30009 * 127.34007 * 2 1 4 4 O 1.20651 * 112.30746 * 179.97438 * 3 2 1 5 5 C 1.33492 * 113.15334 * 359.74847 * 4 3 2 6 6 C 1.37354 * 106.34313 * 0.39403 * 5 4 3 7 7 C 1.47401 * 128.56483 * 179.90693 * 6 5 4 8 8 O 1.21609 * 120.00125 * 214.96741 * 7 6 5 9 9 N 1.34773 * 120.00172 * 34.97623 * 7 6 5 10 10 C 1.46510 * 119.99560 * 355.61957 * 9 7 6 11 11 C 1.46499 * 120.00448 * 175.62581 * 9 7 6 12 12 C 1.52999 * 109.46921 * 89.99350 * 11 9 7 13 13 H 1.08996 * 109.47231 * 60.00627 * 12 11 9 14 14 O 1.42898 * 109.47457 * 300.00204 * 12 11 9 15 15 C 1.53002 * 109.46868 * 180.02562 * 12 11 9 16 16 N 1.46898 * 109.47095 * 185.00079 * 15 12 11 17 17 C 1.46907 * 111.00045 * 179.97438 * 16 15 12 18 18 C 1.50701 * 109.47132 * 179.97438 * 17 16 15 19 19 O 1.21296 * 119.99748 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00128 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00474 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99391 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00376 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99799 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 119.99932 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47209 * 90.00283 * 25 23 21 27 27 H 1.48501 * 109.47018 * 209.99761 * 25 23 21 28 28 H 1.48498 * 109.47353 * 329.99906 * 25 23 21 29 29 H 1.08997 * 109.47513 * 270.00787 * 1 2 3 30 30 H 1.09007 * 109.47005 * 30.00976 * 1 2 3 31 31 H 1.09005 * 109.46897 * 150.00326 * 1 2 3 32 32 H 1.08003 * 126.82817 * 180.30068 * 5 4 3 33 33 H 1.08997 * 109.47245 * 275.36310 * 10 9 7 34 34 H 1.08999 * 109.47205 * 35.36596 * 10 9 7 35 35 H 1.09000 * 109.46592 * 155.36827 * 10 9 7 36 36 H 1.08996 * 109.47346 * 209.99209 * 11 9 7 37 37 H 1.08996 * 109.46657 * 329.99625 * 11 9 7 38 38 H 0.96707 * 114.00073 * 300.00167 * 14 12 11 39 39 H 1.09003 * 109.47240 * 304.99926 * 15 12 11 40 40 H 1.08998 * 109.47493 * 65.00220 * 15 12 11 41 41 H 1.00904 * 111.00141 * 303.95219 * 16 15 12 42 42 H 1.09000 * 109.47166 * 300.00251 * 17 16 15 43 43 H 1.09001 * 109.46949 * 60.00175 * 17 16 15 44 44 H 0.97001 * 119.99561 * 0.02562 * 20 18 17 45 45 H 0.96997 * 119.99870 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0336 0.0000 4 8 3.4607 0.7207 0.0005 5 6 3.6493 -0.6008 0.0063 6 6 2.3991 -1.1697 0.0008 7 6 2.0400 -2.5993 0.0018 8 8 1.0581 -2.9800 -0.6062 9 7 2.7998 -3.4845 0.6768 10 6 4.0347 -3.0421 1.3293 11 6 2.3910 -4.8889 0.7579 12 6 2.9877 -5.6625 -0.4195 13 1 4.0752 -5.5980 -0.3829 14 8 2.5182 -5.0998 -1.6463 15 6 2.5602 -7.1292 -0.3352 16 7 3.2285 -7.8957 -1.3953 17 6 2.8414 -9.3120 -1.3447 18 6 3.5446 -10.0645 -2.4448 19 8 4.2948 -9.4787 -3.1967 20 7 3.3408 -11.3885 -2.5926 21 6 3.9800 -12.0731 -3.5937 22 1 4.6473 -11.5513 -4.2637 23 6 3.7694 -13.4380 -3.7464 24 7 2.9570 -14.0726 -2.9314 25 14 4.6410 -14.3707 -5.1100 26 1 5.9427 -14.8798 -4.6079 27 1 3.7978 -15.5128 -5.5458 28 1 4.8755 -13.4613 -6.2603 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5140 31 1 -0.3633 -0.8901 -0.5138 32 1 4.5966 -1.1196 0.0124 33 1 4.8494 -3.0449 0.6052 34 1 3.8985 -2.0334 1.7191 35 1 4.2750 -3.7191 2.1491 36 1 2.7492 -5.3182 1.6935 37 1 1.3035 -4.9534 0.7212 38 1 1.5568 -5.1234 -1.7473 39 1 2.8402 -7.5339 0.6374 40 1 1.4799 -7.2006 -0.4611 41 1 3.0364 -7.5003 -2.3035 42 1 3.1236 -9.7315 -0.3791 43 1 1.7630 -9.3989 -1.4774 44 1 2.7411 -11.8570 -1.9910 45 1 2.8097 -15.0254 -3.0382 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332565557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:37 Heat of formation + Delta-G solvation = -79.719389 kcal Electronic energy + Delta-G solvation = -28851.328545 eV Core-core repulsion = 24485.535956 eV Total energy + Delta-G solvation = -4365.792589 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.97596 -41.00531 -40.16519 -38.71171 -36.57106 -36.14439 -35.58272 -35.47010 -33.32418 -33.26190 -31.42539 -29.79253 -28.88362 -27.81493 -26.85492 -25.46628 -24.07066 -22.60336 -22.27956 -21.12100 -20.88475 -19.91901 -18.87033 -18.61946 -18.23921 -17.79759 -17.46275 -17.21933 -16.94434 -16.68533 -16.27320 -15.91265 -15.85016 -15.46112 -15.15728 -14.90887 -14.64258 -14.35053 -14.29348 -14.18998 -13.95771 -13.79204 -13.56548 -13.47193 -13.23028 -13.13299 -13.01622 -12.78312 -12.55341 -12.42586 -12.31466 -12.12641 -12.02164 -11.51569 -11.32623 -11.11627 -10.95552 -10.69702 -10.35798 -10.02273 -9.62909 -9.33206 -8.47356 -5.96138 0.14126 0.72260 1.37801 1.41619 1.54435 1.70829 1.91286 2.04545 2.24198 2.29579 2.90082 3.02246 3.19813 3.29737 3.46704 3.56305 3.69428 3.90115 3.96919 4.11374 4.17005 4.27634 4.33333 4.38210 4.42826 4.50464 4.55822 4.56467 4.59448 4.64980 4.71584 4.72951 4.74828 4.90690 5.10198 5.15167 5.40239 5.42246 5.88177 6.10269 6.25386 6.36147 6.59699 6.80032 7.05723 7.12082 7.18569 7.55443 8.11306 8.69966 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031096 B = 0.001648 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.210107 B =16990.924703 C =17071.376334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.051 3.949 3 N -0.381 5.381 4 O 0.095 5.905 5 C 0.019 3.981 6 C -0.274 4.274 7 C 0.597 3.403 8 O -0.559 6.559 9 N -0.598 5.598 10 C 0.055 3.945 11 C 0.092 3.908 12 C 0.098 3.902 13 H 0.101 0.899 14 O -0.571 6.571 15 C 0.032 3.968 16 N -0.680 5.680 17 C 0.065 3.935 18 C 0.435 3.565 19 O -0.625 6.625 20 N -0.572 5.572 21 C -0.336 4.336 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.993 3.007 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.275 1.275 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.267 0.733 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.081 0.919 38 H 0.378 0.622 39 H 0.102 0.898 40 H 0.042 0.958 41 H 0.343 0.657 42 H 0.110 0.890 43 H 0.064 0.936 44 H 0.397 0.603 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.450 24.986 16.198 29.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 N -0.090 5.090 4 O 0.036 5.964 5 C -0.063 4.063 6 C -0.282 4.282 7 C 0.385 3.615 8 O -0.438 6.438 9 N -0.330 5.330 10 C -0.087 4.087 11 C -0.031 4.031 12 C 0.038 3.962 13 H 0.118 0.882 14 O -0.377 6.377 15 C -0.098 4.098 16 N -0.313 5.313 17 C -0.067 4.067 18 C 0.223 3.777 19 O -0.512 6.512 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.817 3.183 26 H -0.195 1.195 27 H -0.195 1.195 28 H -0.199 1.199 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.283 0.717 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.121 0.879 36 H 0.142 0.858 37 H 0.099 0.901 38 H 0.226 0.774 39 H 0.120 0.880 40 H 0.060 0.940 41 H 0.162 0.838 42 H 0.128 0.872 43 H 0.082 0.918 44 H 0.231 0.769 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.485 26.286 15.691 30.649 hybrid contribution -1.435 -1.853 -0.825 2.485 sum -2.920 24.432 14.866 28.748 Atomic orbital electron populations 1.20306 0.84323 1.04536 1.04492 1.25197 0.99738 0.86636 0.99585 1.73672 0.89898 1.24166 1.21237 1.84553 1.20884 1.24046 1.66896 1.27337 1.00968 0.82831 0.95156 1.22286 0.94042 0.95079 1.16759 1.16986 0.82502 0.83676 0.78323 1.90734 1.29393 1.79920 1.43786 1.47551 1.24930 1.08224 1.52247 1.22437 0.84681 1.02707 0.98871 1.22255 1.01285 0.79711 0.99840 1.22382 0.99859 0.89755 0.84212 0.88152 1.86582 1.27799 1.83667 1.39682 1.22705 0.96556 0.93959 0.96566 1.60036 1.61948 1.00577 1.08744 1.21556 0.97636 0.89580 0.97933 1.20953 0.85800 0.82709 0.88274 1.90500 1.42429 1.68919 1.49344 1.41924 1.41936 1.07169 1.29938 1.19666 1.25074 0.91786 1.10006 0.90465 1.26038 0.97606 0.96941 1.00645 1.69665 1.36643 1.10973 1.38711 0.84923 0.78145 0.77543 0.77689 1.19529 1.19452 1.19940 0.88568 0.89433 0.89782 0.71733 0.90657 0.89781 0.87913 0.85759 0.90054 0.77403 0.87959 0.94029 0.83807 0.87229 0.91829 0.76900 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 10.49 71.23 0.75 -0.47 16 2 C 0.05 0.95 7.59 45.16 0.34 1.29 16 3 N -0.38 -7.38 12.01 -44.79 -0.54 -7.92 16 4 O 0.09 1.41 11.06 77.00 0.85 2.27 16 5 C 0.02 0.19 10.09 67.61 0.68 0.87 16 6 C -0.27 -4.58 5.74 -18.74 -0.11 -4.68 16 7 C 0.60 11.49 7.22 86.66 0.63 12.11 16 8 O -0.56 -14.52 14.43 8.58 0.12 -14.39 16 9 N -0.60 -7.76 2.83 -850.69 -2.41 -10.17 16 10 C 0.05 0.26 9.09 127.77 1.16 1.42 16 11 C 0.09 1.16 5.18 86.38 0.45 1.61 16 12 C 0.10 1.82 3.48 30.59 0.11 1.93 16 13 H 0.10 2.02 8.14 -2.39 -0.02 2.01 16 14 O -0.57 -14.33 11.57 -136.34 -1.58 -15.90 16 15 C 0.03 0.64 5.36 86.30 0.46 1.10 16 16 N -0.68 -21.28 6.13 -517.91 -3.17 -24.45 16 17 C 0.07 2.20 6.17 85.56 0.53 2.73 16 18 C 0.44 20.99 7.82 87.66 0.69 21.68 16 19 O -0.63 -35.61 15.78 -3.08 -0.05 -35.66 16 20 N -0.57 -29.60 5.29 -306.99 -1.62 -31.22 16 21 C -0.34 -19.29 9.68 84.04 0.81 -18.48 16 22 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 23 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 24 N -0.92 -49.56 13.05 21.66 0.28 -49.27 16 25 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 29 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.08 1.49 7.33 -2.38 -0.02 1.48 16 32 H 0.27 0.21 6.36 -2.91 -0.02 0.19 16 33 H 0.07 0.21 7.46 -2.39 -0.02 0.20 16 34 H 0.08 0.23 5.84 -2.39 -0.01 0.22 16 35 H 0.10 0.11 7.83 -2.39 -0.02 0.09 16 36 H 0.12 0.76 7.86 -2.39 -0.02 0.74 16 37 H 0.08 1.19 7.48 -2.39 -0.02 1.17 16 38 H 0.38 8.80 8.32 -74.05 -0.62 8.18 16 39 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.34 12.28 7.99 -89.69 -0.72 11.57 16 42 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 43 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.40 19.32 7.90 -92.71 -0.73 18.59 16 45 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -80.79 383.26 -0.11 -80.90 By element: Atomic # 1 Polarization: 40.72 SS G_CDS: -0.99 Total: 39.72 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: 6.96 Total: 20.91 kcal Atomic # 7 Polarization: -115.58 SS G_CDS: -7.46 Total: -123.04 kcal Atomic # 8 Polarization: -63.04 SS G_CDS: -0.65 Total: -63.69 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -80.79 -0.11 -80.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332565557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.181 kcal (2) G-P(sol) polarization free energy of solvation -80.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds